Cite this strain

Bacillus sp. (JCM 19058)

Name: Bacillus sp. (JCM 19058)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162391

Type strain

Culture col. no. JCM 19058

NCBI tax ID(s) 1460652

Special Collections JCM

History JCM <-- T. Kudo Z216.

Links

JCM 19058 is a bacterium that was isolated from Grass carp .

genome sequence Bacteria

Name and taxonomic classification

SI-ID 131465

JCM 19058

@ref 20215

Last LPSN update 2026-05-29 08:44:55

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Full scientific name Bacillus Cohn 1872 (Approved Lists 1980)

Synonyms (4)

"Quasibacillus"
Weizmannia
"Maribacillus"
Niallia

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.042

Spore formation

@ref	Spore formation	Confidence
125439		91.939

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Grass carp (Ctenopharyngodon idellus)	Ctenopharyngodon idellus	Chikugo River, Fukuoka	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM131055v1 assembly for Bacillus sp. JCM 19058	contig	GCA_001310555	1460652.3	2728369648	1460652	0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM131055v1 assembly for Bacillus sp. JCM 19058
BV-BRC: 1460652.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.04	no
125439	gram_stain	BacteriaNetⓘ	variable	72.79	no
125439	motility	BacteriaNetⓘ	yes	87.26	no
125439	spore_formation	BacteriaNetⓘ	yes	91.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus sp. JCM 19058
PATRIC: 1460652.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	77.49	no
125438	anaerobic	anaerobicⓘ	no	97.56	no
125438	spore-forming	spore-formingⓘ	yes	88.58	no
125438	aerobic	aerobicⓘ	yes	77.07	no
125438	thermophilic	thermophileⓘ	no	92.98	yes
125438	flagellated	motile2+ⓘ	yes	79.77	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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