Cite this strain

Bacillus sp. (JCM 19059)

Name: Bacillus sp. (JCM 19059)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162392

Type strain

Culture col. no. JCM 19059

NCBI tax ID(s) 1481929

Special Collections JCM

History JCM <-- T. Kudo W'1 <-- T. Inoue.

Links

JCM 19059 is a bacterium that was isolated from Sand, Tomioka tidal flat.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 393295

JCM 19059

@ref 20215

Last LPSN update 2026-05-29 08:44:55

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Full scientific name Bacillus Cohn 1872 (Approved Lists 1980)

Synonyms (4)

"Quasibacillus"
Weizmannia
"Maribacillus"
Niallia

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.486

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sand, Tomioka tidal flat	Kumamoto	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM131065v1 assembly for Bacillus sp. JCM 19059	contig	GCA_001310655	1481929.3	2728369652	1481929	9.26

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM131065v1 assembly for Bacillus sp. JCM 19059
BV-BRC: 1481929.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.49	no
125439	motility	BacteriaNetⓘ	yes	72.42	no
125439	gram_stain	BacteriaNetⓘ	variable	60.03	no
125439	spore_formation	BacteriaNetⓘ	yes	80.23	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus sp. JCM 19059
PATRIC: 1481929.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.55	no
125438	anaerobic	anaerobicⓘ	no	99.29	no
125438	spore-forming	spore-formingⓘ	yes	89.04	no
125438	aerobic	aerobicⓘ	yes	80.89	no
125438	thermophilic	thermophileⓘ	no	92.17	yes
125438	flagellated	motile2+ⓘ	yes	84.34	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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