Name: Oceanobacillus sp. JCM 19060
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162393

Type strain:

Species: Oceanobacillus sp.

Culture col. no.: JCM 19060

Strain history: T. Kudo W'2 <-- T. Inoue.

NCBI tax ID(s): 1481930 (species)

Special Collections

Other strains from Oceanobacillus sp.

Section

Oceanobacillus sp. JCM 19060 is a spore-forming bacterium that was isolated from Sand, Tomioka tidal flat.

spore-forming
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Oceanobacillus*
	Full Scientific Name (LPSN)	Oceanobacillus Lu et al. 2002

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sand, Tomioka tidal flat
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kumamoto
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceanobacillus sp. JCM 19060	GCA_001310675	contig	GenBank ENA	1481930 tax ID	*
[Ref.: #66792]	Oceanobacillus sp. JCM 19060	1481930.3	wgs	PATRIC	1481930 tax ID	*
[Ref.: #66792]	Oceanobacillus sp. JCM 19060	2728369653	draft	JGI IMG/M	1481930 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oceanobacillus sp. JCM 19060 PATRIC: 1481930.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oceanobacillus sp. JCM 19060 PATRIC: 1481930.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.35	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.516	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.409	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	53.514	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.967	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.42	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19060

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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