Cite this strain

Bacillus sp. (DSM 27838, JCA)

Name: Bacillus sp. (DSM 27838, JCA)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159950

Type strain

Strain Designation JCA

Culture col. no. DSM 27838 JCA

NCBI tax ID(s) 83428

Special Collections DSMZ Cadoret human gut

Links

JCA is a mesophilic prokaryote that was isolated from human feces.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 404028

DSM 27838

@ref 20215

Last LPSN update 2025-12-16 10:08:23

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Full scientific name Bacillus Cohn 1872 (Approved Lists 1980)

Synonyms (4)

Niallia
"Quasibacillus"
Weizmannia
"Maribacillus"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66854	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66854	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93

Spore formation

@ref	Spore formation	Confidence
125438		92.904

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
66854	human feces	Saudi Arabia	SAU	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Bacillus saudimassiliensis JCA assembly for Neobacillus jeddahensis JCA	scaffold	GCA_000820865	1414718.3	2648501240	1414718	66.15

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus sp. JCA
NCBI: GCA_000820865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	79.40	no
125439	motility	BacteriaNetⓘ	yes	66.00	no
125439	gram_stain	BacteriaNetⓘ	variable	84.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus sp. JCA JCA
NCBI: GCA_000820865.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.11	no
125438	anaerobic	anaerobicⓘ	no	95.73	no
125438	aerobic	aerobicⓘ	yes	55.52	no
125438	spore-forming	spore-formingⓘ	yes	92.90	no
125438	thermophilic	thermophileⓘ	no	89.31	yes
125438	flagellated	motile2+ⓘ	yes	73.47	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66854	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27838
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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