Strain identifier
BacDive ID: 159950
Type strain: 
Species: Bacillus sp.
Strain Designation: JCA
Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JCA
NCBI tax ID(s): 1409 (species)
version 8.1 (current version)
General
@ref: 66854
BacDive-ID: 159950
DSM-Number: 27838
keywords: genome sequence, Bacteria, mesophilic
description: Bacillus sp. JCA is a mesophilic bacterium that was isolated from human feces.
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
- @ref: 66854
- history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JCA
doi: 10.13145/bacdive159950.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 66854
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: JCA
type strain: no
Culture and growth conditions
culture medium
- @ref: 66854
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 66854
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 66854
- sample type: human feces
- country: Saudi Arabia
- origin.country: SAU
- continent: Asia
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus sp. JCA | GCA_000820865 | scaffold | ncbi | 1414718 |
| 66792 | Bacillus sp. JCA | 1414718.3 | wgs | patric | 1414718 |
| 66792 | Bacillus sp. JCA | 2648501240 | draft | img | 1414718 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.888 | no |
| motile | yes | 88.888 | no |
| flagellated | yes | 82.102 | no |
| flagellated | yes | 82.102 | no |
| gram-positive | yes | 82.337 | no |
| gram-positive | yes | 82.337 | no |
| anaerobic | no | 98.594 | no |
| anaerobic | no | 98.594 | no |
| aerobic | yes | 55.91 | no |
| aerobic | yes | 55.91 | no |
| halophile | no | 84.822 | no |
| halophile | no | 84.822 | no |
| spore-forming | yes | 96.047 | no |
| spore-forming | yes | 96.047 | no |
| glucose-util | yes | 88.274 | no |
| glucose-util | yes | 88.274 | no |
| thermophile | no | 96.502 | yes |
| thermophile | no | 96.502 | yes |
| glucose-ferment | no | 88.051 | no |
| glucose-ferment | no | 88.051 | no |
External links
@ref: 66854
culture collection no.: DSM 27838
straininfo link
- @ref: 112232
- straininfo: 404028
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 66854 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27838 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27838) | |
| 112232 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404028.1 |