Strain identifier
BacDive ID: 131644
Type strain: 
Species: Bacillus sp.
Strain Designation: Root239
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root239 <- Y. Bai
NCBI tax ID(s): 1409 (species)
version 8.1 (current version)
General
@ref: 23440
BacDive-ID: 131644
DSM-Number: 102375
keywords: genome sequence, Bacteria, mesophilic
description: Bacillus sp. Root239 is a mesophilic bacterium that was isolated from Roots of Arabidopsis thaliana .
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
- @ref: 23440
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root239 <- Y. Bai
doi: 10.13145/bacdive131644.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 23440
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: Root239
type strain: no
Culture and growth conditions
culture medium
- @ref: 23440
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 23440
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23440
- sample type: Roots of Arabidopsis thaliana (ecotype Shakdara)
- host species: Arabidopsis thaliana
- geographic location: Potsdam, Golm district (52.416N 12.968E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 52.416
- longitude: 12.968
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus sp. Root239 | GCA_001429385 | scaffold | ncbi | 1736499 |
| 66792 | Bacillus sp. Root239 | 1736499.3 | wgs | patric | 1736499 |
| 66792 | Bacillus sp. Root239 | 2643221732 | draft | img | 1736499 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 83.646 | no |
| gram-positive | yes | 87.359 | no |
| anaerobic | no | 97.408 | no |
| aerobic | yes | 88.459 | no |
| halophile | no | 63.746 | no |
| spore-forming | yes | 93.057 | no |
| glucose-util | yes | 91.649 | no |
| motile | yes | 86.874 | no |
| thermophile | no | 98.739 | no |
| glucose-ferment | no | 86.783 | no |
External links
@ref: 23440
culture collection no.: DSM 102375
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23440 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102375 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102375) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |