Name: Pseudomonas aeruginosa JCM 13054
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161304

Type strain:

Species: Pseudomonas aeruginosa

Culture col. no.: JCM 13054, ATCC 14210

Strain history: K. Komagata <-- R. Hugh 1449 <-- ATCC 14210 <-- J. C. Hoff and C. Drake 73.

NCBI tax ID(s): 287 (species)

SI-ID 36002

ATCC 14210, JCM 13054

Special Collections

Other strains from Pseudomonas aeruginosa

Section

Pseudomonas aeruginosa JCM 13054 is a Gram-negative bacterium that was isolated from Leg ulcer.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas aeruginosa**
	Full Scientific Name (LPSN)	Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

Synonym

"Bacterium aeruginosum"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.5

[Ref.: #69480]	Motility	yes Confidence in %90.34

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %93.851

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Leg ulcer
[Ref.: #67770]	Geographic location (country and/or sea, region)	Spokane, WA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC507951 (>99% sequence identity) for Pseudomonas aeruginosa from Microbeatlas

Aquatic Samples	5046
Soil Samples	1669
Animal Samples	14748
Plant Samples	1294
Total Samples	22757

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudomonas aeruginosa JCM 13054 gene for 16S rRNA, partial sequence	LC507951	1458	GenBank ENA	287 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas aeruginosa strain DVT401	287.11591	complete	PATRIC	287 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas aeruginosa strain DVT401 PATRIC: 287.11591
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas aeruginosa strain DVT401 PATRIC: 287.11591
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.297	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.928	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	93.851	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	90.34	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 13054, ATCC 14210

[Ref.: #113351]

SI-ID 36002

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113351

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36002.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas aeruginosa strain DVT401

Pseudomonas aeruginosa strain DVT401

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