Pseudomonas aeruginosa JCM 13054 is a mesophilic prokaryote that was isolated from Leg ulcer.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas aeruginosa |
| Full scientific name Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 67770 | positive | growth | 30 | mesophilic |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 67770 | Leg ulcer | Spokane, WA | USA | USA | North America |
Global distribution of 16S sequence LC507951 (>99% sequence identity) for Pseudomonas aeruginosa from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM1334357v1 assembly for Pseudomonas aeruginosa DVT401 | complete | 287 | 98.12 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | Pseudomonas aeruginosa JCM 13054 gene for 16S rRNA, partial sequence | LC507951 | 1458 | 287 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.50 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 86.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 92.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 75.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.30 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 85.93 | no |
| 125438 | aerobic | aerobicⓘ | yes | 93.85 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 90.34 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genomic characterization of lytic bacteriophages targeting genetically diverse Pseudomonas aeruginosa clinical isolates. | Nordstrom HR, Evans DR, Finney AG, Westbrook KJ, Zamora PF, Hofstaedter CE, Yassin MH, Pradhan A, Iovleva A, Ernst RK, Bomberger JM, Shields RK, Doi Y, Van Tyne D. | iScience | 10.1016/j.isci.2022.104372 | 2022 | ||
| Antimicrobial, Cytotoxic, and Anti-Inflammatory Activities of Tigridia vanhouttei Extracts. | Mejia-Mendez JL, Lorenzo-Leal AC, Bach H, Lopez-Mena ER, Navarro-Lopez DE, Hernandez LR, Juarez ZN, Sanchez-Arreola E. | Plants (Basel) | 10.3390/plants12173136 | 2023 | ||
| Biological Activities and Chemical Profiles of Kalanchoe fedtschenkoi Extracts. | Mejia-Mendez JL, Bach H, Lorenzo-Leal AC, Navarro-Lopez DE, Lopez-Mena ER, Hernandez LR, Sanchez-Arreola E. | Plants (Basel) | 10.3390/plants12101943 | 2023 | ||
| Aromatic Herbs as a Source of Bioactive Compounds: An Overview of Their Antioxidant Capacity, Antimicrobial Activity, and Major Applications. | Grigore-Gurgu L, Dumitrascu L, Aprodu I. | Molecules | 10.3390/molecules30061304 | 2025 | ||
| Green Synthesis of Silver Nanoparticles with Extracts from Kalanchoe fedtschenkoi: Characterization and Bioactivities. | Mejia-Mendez JL, Sanchez-Ante G, Cerro-Lopez M, Minutti-Calva Y, Navarro-Lopez DE, Lozada-Ramirez JD, Bach H, Lopez-Mena ER, Sanchez-Arreola E. | Biomolecules | 10.3390/biom14070782 | 2024 | ||
| Cryptic Metabolites from Marine-Derived Microorganisms Using OSMAC and Epigenetic Approaches. | Pinedo-Rivilla C, Aleu J, Duran-Patron R. | Mar Drugs | 10.3390/md20020084 | 2022 | ||
| Development and Evaluation of the Biological Activities of a Plain Mucoadhesive Hydrogel as a Potential Vehicle for Oral Mucosal Drug Delivery. | Pardo-Rendon AG, Mejia-Mendez JL, Lopez-Mena ER, Bernal-Chavez SA. | Gels | 10.3390/gels10090574 | 2024 | ||
| Metabolism | Antimicrobial activity of protein-containing fractions isolated from Lactobacillus plantarum NRRL B-4496 culture. | Arrioja-Breton D, Mani-Lopez E, Bach H, Lopez-Malo A. | Braz J Microbiol | 10.1007/s42770-020-00266-5 | 2020 | |
| Antimicrobial and anti-inflammatory activities of commercial aromatizing fragrances. | Bach H, Bach H. | Future Sci OA | 10.2144/fsoa-2020-0194 | 2021 | ||
| Phytochemical Screening and Bioactivities of Cactaceae Family Members Endemic to Mexico. | Rodriguez-Mendoza CA, Gonzalez Campos RE, Lorenzo-Leal AC, Bautista Rodriguez E, Paredes Juarez GA, El Kassis EG, Hernandez LR, Juarez ZN, Bach H. | Plants (Basel) | 10.3390/plants11212856 | 2022 | ||
| Bioactivities of Flavonoids from Lopezia racemosa. | Vergara Barragan E, Bach H, Meza-Reyes S, Montiel-Smith S, Sanchez-Arreola E, Hernandez LR. | Biomed Res Int | 10.1155/2019/3286489 | 2019 | ||
| Boron-containing capsaicinoids. | Melanson JA, Landry MF, Lanteigne M, McQuillan K, Correa H, Kerr RG, Westcott SA. | RSC Adv | 10.1039/d1ra04943g | 2021 | ||
| Antimicrobial, Cytotoxic, and Anti-Inflammatory Activities of Pimenta dioica and Rosmarinus officinalis Essential Oils. | Lorenzo-Leal AC, Palou E, Lopez-Malo A, Bach H. | Biomed Res Int | 10.1155/2019/1639726 | 2019 | ||
| Pathogenicity | Discovery of Primarolides A and B from Marine Fungus Asteromyces cruciatus Using Osmotic Stress and Treatment with Suberoylanilide Hydroxamic Acid. | Igboeli HA, Marchbank DH, Correa H, Overy D, Kerr RG. | Mar Drugs | 10.3390/md17080435 | 2019 | |
| Glycogen synthase kinase 3 inhibition controls Mycobacterium tuberculosis infection. | Pena-Diaz S, Chao JD, Rens C, Haghdadi H, Zheng X, Flanagan K, Ko M, Shapira T, Richter A, Maestre-Batlle D, Canseco JO, Gutierrez MG, Duc KD, Pelech S, Av-Gay Y. | iScience | 10.1016/j.isci.2024.110555 | 2024 | ||
| Pathogenicity | High-Content Screening of Eukaryotic Kinase Inhibitors Identify CHK2 Inhibitor Activity Against Mycobacterium tuberculosis. | Shapira T, Rankine-Wilson L, Chao JD, Pichler V, Rens C, Pfeifer T, Av-Gay Y. | Front Microbiol | 10.3389/fmicb.2020.553962 | 2020 | |
| Discovery of a New Natural Product and a Deactivation of a Quorum Sensing System by Culturing a "Producer" Bacterium With a Heat-Killed "Inducer" Culture. | Liang L, Sproule A, Haltli B, Marchbank DH, Berrue F, Overy DP, McQuillan K, Lanteigne M, Duncan N, Correa H, Kerr RG. | Front Microbiol | 10.3389/fmicb.2018.03351 | 2018 | ||
| Pathogenicity | Nitric oxide charged catheters as a potential strategy for prevention of hospital acquired infections. | Margel D, Mizrahi M, Regev-Shoshani G, Ko M, Moshe M, Ozalvo R, Shavit-Grievink L, Baniel J, Kedar D, Yossepowitch O, Lifshitz D, Nadu A, Greenberg D, Av-Gay Y. | PLoS One | 10.1371/journal.pone.0174443 | 2017 | |
| Cytotoxic and antimicrobial activity of pseudopterosins and seco-pseudopterosins isolated from the octocoral Pseudopterogorgia elisabethae of San Andrés and Providencia Islands (Southwest Caribbean Sea). | Correa H, Aristizabal F, Duque C, Kerr R. | Mar Drugs | 10.3390/md9030334 | 2011 | ||
| Design of Organoiron Dendrimers Containing Paracetamol for Enhanced Antibacterial Efficacy. | Abd-El-Aziz AS, El-Ghezlani EG, Abdelghani AA. | Molecules | 10.3390/molecules25194514 | 2020 | ||
| Terrosamycins A and B, Bioactive Polyether Ionophores from Streptomyces sp. RKND004 from Prince Edward Island Sediment. | Sproule A, Correa H, Decken A, Haltli B, Berrue F, Overy DP, Kerr RG. | Mar Drugs | 10.3390/md17060347 | 2019 | ||
| Antimicrobial, anti-inflammatory, antiparasitic, and cytotoxic activities of Laennecia confusa. | Martinez Ruiz MG, Richard-Greenblatt M, Juarez ZN, Av-Gay Y, Bach H, Hernandez LR. | ScientificWorldJournal | 10.1100/2012/263572 | 2012 | ||
| Isolation and Characterization of Bacteria Colonizing Acartia tonsa Copepod Eggs and Displaying Antagonist Effects against Vibrio anguillarum, Vibrio alginolyticus and Other Pathogenic Strains. | Zidour M, Chevalier M, Belguesmia Y, Cudennec B, Grard T, Drider D, Souissi S, Flahaut C. | Front Microbiol | 10.3389/fmicb.2017.01919 | 2017 | ||
| Sea foam as a source of fungal inoculum for the isolation of biologically active natural products. | Overy DP, Berrue F, Correa H, Hanif N, Hay K, Lanteigne M, Mquilian K, Duffy S, Boland P, Jagannathan R, Carr GS, Vansteeland M, Kerr RG. | Mycology | 10.1080/21501203.2014.931893 | 2014 | ||
| Phylogeny | Bioprospecting from marine sediments of New Brunswick, Canada: exploring the relationship between total bacterial diversity and actinobacteria diversity. | Duncan K, Haltli B, Gill KA, Kerr RG. | Mar Drugs | 10.3390/md12020899 | 2014 | |
| From Nanobiotechnology, Positively Charged Biomimetic Dendrimers as Novel Antibacterial Agents: A Review. | Alfei S, Schito AM. | Nanomaterials (Basel) | 10.3390/nano10102022 | 2020 | ||
| Phylogeny | Westerdykella reniformis sp. nov., producing the antibiotic metabolites melinacidin IV and chetracin B. | Ebead GA, Overy DP, Berrue F, Kerr RG. | IMA Fungus | 10.5598/imafungus.2012.03.02.11 | 2012 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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