Name: Pseudomonas aeruginosa H1l
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131886

Type strain:

Species: Pseudomonas aeruginosa

Strain Designation: H1l

Culture col. no.: DSM 103301

Strain history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; H1l

NCBI tax ID(s): 287 (species)

SI-ID 401200

DSM 103301

Other strains from Pseudomonas aeruginosa

Section

Pseudomonas aeruginosa H1l is a mesophilic human pathogen that was isolated from digestive fluid of carnivorous plant Nepenthes.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas aeruginosa**
	Full Scientific Name (LPSN)	Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

Synonym

"Bacterium aeruginosum"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23678]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23678]

Culture medium growth

[Ref.: #23678]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23678]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23678]			growth	28 °C

[Ref.: #23678]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23678]	Sample type/isolated from	digestive fluid of carnivorous plant Nepenthes
[Ref.: #23678]	Host species	Nepenthes
[Ref.: #23678]	Geographic location (country and/or sea, region)	Pahang, Mossy Forest (N 04°31’, E 101°22’)
[Ref.: #23678]	Country	Malaysia
[Ref.: #23678]	Country ISO 3 Code	MYS
[Ref.: #23678]	Continent	Asia
[Ref.: #23678]	Geographic location	4.5167°/101.3670°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body Product	#Plant	#Digestive fluid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF557594 (>99% sequence identity) for Pseudomonas aeruginosa from Microbeatlas

Aquatic Samples	5046
Soil Samples	1669
Animal Samples	14748
Plant Samples	1294
Total Samples	22757

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23678]	Pathogenicity (human)	yes
[Ref.: #23678]	Pathogenicity (animal)	yes
[Ref.: #23678]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23678]	Pseudomonas aeruginosa strain H1l 16S ribosomal RNA gene, partial sequence	KF557594	1506	ENA	287 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas aeruginosa H1l	GCA_000633495	contig	GenBank	1416756 tax ID	*
[Ref.: #66792]	Pseudomonas aeruginosa H1l	1416756.3	wgs	PATRIC	1416756 tax ID	*
[Ref.: #66792]	Pseudomonas aeruginosa H1l	2579778545	draft	JGI IMG/M	1416756 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas aeruginosa H1l PATRIC: 1416756.3
[Ref.: #69480]	motile	yes	90.186	no
[Ref.: #69480]	gram-positive	no	98.379	no
[Ref.: #69480]	anaerobic	no	98.612	no
[Ref.: #69480]	halophile	no	90.405	no
[Ref.: #69480]	spore-forming	no	93.566	no
[Ref.: #69480]	thermophile	no	99.8	yes
[Ref.: #69480]	glucose-util	yes	90.369	no
[Ref.: #69480]	aerobic	yes	94.163	no
[Ref.: #69480]	flagellated	yes	85.739	no
[Ref.: #69480]	glucose-ferment	no	90.015	no

Availability in culture collections External links

[Ref.: #23678]

Culture collection no.

DSM 103301

[Ref.: #90274]

SI-ID 401200

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23678

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103301

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90274

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401200.1 )

* These data were automatically processed and therefore are not curated

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