Pseudomonas aeruginosa EML534 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Pseudomonadaceae.
Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas aeruginosa |
| Full scientific name Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 40836 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 40836 | CIP Medium 72 | Medium recipe at CIP | |||
| 40836 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 40836 | positive | growth | 30 | mesophilic |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.4 |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 40836 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 40836 | oxidase | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 40836 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 40836 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM142018v1 assembly for Pseudomonas aeruginosa ATCC 33349 | scaffold | 287 | 24.37 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 91.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 72.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.86 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 95.39 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 85.95 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.30 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 89.85 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Capillary electrophoresis-single-strand conformation polymorphism analysis for rapid identification of Pseudomonas aeruginosa and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. | Ghozzi R, Morand P, Ferroni A, Beretti JL, Bingen E, Segonds C, Husson MO, Izard D, Berche P, Gaillard JL. | J Clin Microbiol | 10.1128/jcm.37.10.3374-3379.1999 | 1999 | |
| Metabolism | Coexistence of two distinct versions of O-antigen polymerase, Wzy-alpha and Wzy-beta, in Pseudomonas aeruginosa serogroup O2 and their contributions to cell surface diversity. | Kaluzny K, Abeyrathne PD, Lam JS. | J Bacteriol | 10.1128/jb.00237-07 | 2007 | |
| Enzymology | Isolation and characterization of monoclonal antibodies against alkaline phosphatase of Pseudomonas aeruginosa. | Husson MO, Mielcarek C, Gavini F, Caron C, Izard D, Leclerc H. | J Clin Microbiol | 10.1128/jcm.27.5.1115-1118.1989 | 1989 | |
| Prevalence of gca, a gene involved in synthesis of A-band common antigen polysaccharide in Pseudomonas aeruginosa. | Currie HL, Lightfoot J, Lam JS. | Clin Diagn Lab Immunol | 10.1128/cdli.2.5.554-562.1995 | 1995 | ||
| Phage display and bacterial expression of a recombinant Fab specific for Pseudomonas aeruginosa serotype O6 lipopolysaccharide. | Tout NL, Lam JS. | Clin Diagn Lab Immunol | 10.1128/cdli.4.2.147-155.1997 | 1997 | ||
| Monoclonal antibodies that distinguish inner core, outer core, and lipid A regions of Pseudomonas aeruginosa lipopolysaccharide. | de Kievit TR, Lam JS. | J Bacteriol | 10.1128/jb.176.23.7129-7139.1994 | 1994 | ||
| Phylogeny | Monoclonal antibodies as probes to examine serotype-specific and cross-reactive epitopes of lipopolysaccharides from serotypes O2, O5, and O16 of Pseudomonas aeruginosa. | Lam JS, Handelsman MY, Chivers TR, MacDonald LA. | J Bacteriol | 10.1128/jb.174.7.2178-2184.1992 | 1992 | |
| Production and characterization of monoclonal antibodies against serotype strains of Pseudomonas aeruginosa. | Lam JS, MacDonald LA, Lam MY, Duchesne LG, Southam GG. | Infect Immun | 10.1128/iai.55.5.1051-1057.1987 | 1987 | ||
| Enzymology | Monoclonal antibodies against Pseudomonas aeruginosa outer membrane antigens: isolation and characterization. | Hancock RE, Wieczorek AA, Mutharia LM, Poole K. | Infect Immun | 10.1128/iai.37.1.166-171.1982 | 1982 | |
| Phylogeny | Subdivision of O serotypes of Pseudomonas aeruginosa with monoclonal antibodies. | Vale TA, Gaston MA, Pitt TL. | J Clin Microbiol | 10.1128/jcm.26.9.1779-1782.1988 | 1988 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #40836 | Collection of Institut Pasteur ; Curators of the CIP; CIP 59.34 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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