Pseudomonas aeruginosa 958/1953-221 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Pseudomonadaceae.
Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas aeruginosa |
| Full scientific name Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 40835 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 40835 | CIP Medium 72 | Medium recipe at CIP | |||
| 40835 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 40835 | positive | growth | 30 | mesophilic |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.1 |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 40835 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 40835 | oxidase | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 40835 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 40835 | 2 | Risk group (French classification) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 92.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 77.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.86 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 95.87 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 85.03 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 91.15 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Capillary electrophoresis-single-strand conformation polymorphism analysis for rapid identification of Pseudomonas aeruginosa and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. | Ghozzi R, Morand P, Ferroni A, Beretti JL, Bingen E, Segonds C, Husson MO, Izard D, Berche P, Gaillard JL. | J Clin Microbiol | 10.1128/jcm.37.10.3374-3379.1999 | 1999 | |
| Synergy between Lactobacillus murinus and anti-PcrV antibody delivered in the airways to boost protection against Pseudomonas aeruginosa. | Secher T, Cortes M, Boisseau C, Barba Goudiaby MT, Pitiot A, Parent C, Thomas M, Heuze-Vourc'h N. | Mol Ther Methods Clin Dev | 10.1016/j.omtm.2024.101330 | 2024 | ||
| Virulence Factors of Pseudomonas Aeruginosa and Antivirulence Strategies to Combat Its Drug Resistance. | Liao C, Huang X, Wang Q, Yao D, Lu W. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.926758 | 2022 | ||
| Pathogenicity | Morphological bactericidal fast-acting effects of peracetic acid, a high-level disinfectant, against Staphylococcus aureus and Pseudomonas aeruginosa biofilms in tubing. | Chino T, Nukui Y, Morishita Y, Moriya K. | Antimicrob Resist Infect Control | 10.1186/s13756-017-0281-1 | 2017 | |
| IgYs: on her majesty's secret service. | Grzywa R, Lupicka-Slowik A, Sienczyk M. | Front Immunol | 10.3389/fimmu.2023.1199427 | 2023 | ||
| Pathogenicity | Human pre-elafin inhibits a Pseudomonas aeruginosa-secreted peptidase and prevents its proliferation in complex media. | Bellemare A, Vernoux N, Morisset D, Bourbonnais Y. | Antimicrob Agents Chemother | 10.1128/aac.00585-07 | 2008 | |
| Pathogenicity | The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters. | Thrane SW, Taylor VL, Freschi L, Kukavica-Ibrulj I, Boyle B, Laroche J, Pirnay JP, Levesque RC, Lam JS, Jelsbak L. | mBio | 10.1128/mbio.01396-15 | 2015 | |
| Pathogenicity | Understanding Pseudomonas aeruginosa-Host Interactions: The Ongoing Quest for an Efficacious Vaccine. | Sainz-Mejias M, Jurado-Martin I, McClean S. | Cells | 10.3390/cells9122617 | 2020 | |
| Metabolism | Evidence that WapB is a 1,2-glucosyltransferase of Pseudomonas aeruginosa involved in Lipopolysaccharide outer core biosynthesis. | Kocincova D, Hao Y, Vinogradov E, Lam JS. | J Bacteriol | 10.1128/jb.00032-11 | 2011 | |
| Structural and antimicrobial properties of human pre-elafin/trappin-2 and derived peptides against Pseudomonas aeruginosa. | Bellemare A, Vernoux N, Morin S, Gagne SM, Bourbonnais Y. | BMC Microbiol | 10.1186/1471-2180-10-253 | 2010 | ||
| Enzymology | Development of a novel PCR restriction analysis of the hsp65 gene as a rapid method to screen for the Mycobacterium tuberculosis complex and nontuberculous mycobacteria in high-burden countries. | Varma-Basil M, Garima K, Pathak R, Dwivedi SK, Narang A, Bhatnagar A, Bose M. | J Clin Microbiol | 10.1128/jcm.03067-12 | 2013 | |
| Enzymology | Structure of Pseudomonas aeruginosa populations analyzed by single nucleotide polymorphism and pulsed-field gel electrophoresis genotyping. | Morales G, Wiehlmann L, Gudowius P, van Delden C, Tummler B, Martinez JL, Rojo F. | J Bacteriol | 10.1128/jb.186.13.4228-4237.2004 | 2004 | |
| Surface localization of Pseudomonas aeruginosa outer membrane porin protein F by using monoclonal antibodies. | Mutharia LM, Hancock RE. | Infect Immun | 10.1128/iai.42.3.1027-1033.1983 | 1983 | ||
| Phylogeny | A major Pseudomonas aeruginosa clone common to patients and aquatic habitats. | Romling U, Wingender J, Muller H, Tummler B. | Appl Environ Microbiol | 10.1128/aem.60.6.1734-1738.1994 | 1994 | |
| Phylogeny | Comparative typing of Pseudomonas aeruginosa by random amplification of polymorphic DNA or pulsed-field gel electrophoresis of DNA macrorestriction fragments. | Renders N, Romling U, Verbrugh H, van Belkum A. | J Clin Microbiol | 10.1128/jcm.34.12.3190-3195.1996 | 1996 | |
| Safety and immunogenicity of a Pseudomonas aeruginosa hybrid outer membrane protein F-I vaccine in human volunteers. | Mansouri E, Gabelsberger J, Knapp B, Hundt E, Lenz U, Hungerer KD, Gilleland HE, Staczek J, Domdey H, von Specht BU. | Infect Immun | 10.1128/iai.67.3.1461-1470.1999 | 1999 | ||
| Genetics | Comparative genome mapping of Pseudomonas aeruginosa PAO with P. aeruginosa C, which belongs to a major clone in cystic fibrosis patients and aquatic habitats. | Schmidt KD, Tummler B, Romling U. | J Bacteriol | 10.1128/jb.178.1.85-93.1996 | 1996 | |
| Enzymology | Isolation and characterization of monoclonal antibodies against alkaline phosphatase of Pseudomonas aeruginosa. | Husson MO, Mielcarek C, Gavini F, Caron C, Izard D, Leclerc H. | J Clin Microbiol | 10.1128/jcm.27.5.1115-1118.1989 | 1989 | |
| Prevalence of gca, a gene involved in synthesis of A-band common antigen polysaccharide in Pseudomonas aeruginosa. | Currie HL, Lightfoot J, Lam JS. | Clin Diagn Lab Immunol | 10.1128/cdli.2.5.554-562.1995 | 1995 | ||
| Phage display and bacterial expression of a recombinant Fab specific for Pseudomonas aeruginosa serotype O6 lipopolysaccharide. | Tout NL, Lam JS. | Clin Diagn Lab Immunol | 10.1128/cdli.4.2.147-155.1997 | 1997 | ||
| TH1 cells trigger tumor necrosis factor alpha-mediated hypersensitivity to Pseudomonas aeruginosa after adoptive transfer into SCID mice. | Fruh R, Blum B, Mossmann H, Domdey H, von Specht BU. | Infect Immun | 10.1128/iai.63.3.1107-1112.1995 | 1995 | ||
| Monoclonal antibodies that distinguish inner core, outer core, and lipid A regions of Pseudomonas aeruginosa lipopolysaccharide. | de Kievit TR, Lam JS. | J Bacteriol | 10.1128/jb.176.23.7129-7139.1994 | 1994 | ||
| Phylogeny | Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa. | Klockgether J, Wurdemann D, Reva O, Wiehlmann L, Tummler B. | J Bacteriol | 10.1128/jb.01688-06 | 2007 | |
| Enzymology | Evaluation of an immunofluorescent-antibody test for rapid identification of Pseudomonas aeruginosa in blood cultures. | Counts GW, Schwartz RW, Ulness BK, Hamilton DJ, Rosok MJ, Cunningham MD, Tam MR, Darveau RP. | J Clin Microbiol | 10.1128/jcm.26.6.1161-1165.1988 | 1988 | |
| Production and characterization of monoclonal antibodies against serotype strains of Pseudomonas aeruginosa. | Lam JS, MacDonald LA, Lam MY, Duchesne LG, Southam GG. | Infect Immun | 10.1128/iai.55.5.1051-1057.1987 | 1987 | ||
| Generation and characterization of murine antiflagellum monoclonal antibodies that are protective against lethal challenge with Pseudomonas aeruginosa. | Rosok MJ, Stebbins MR, Connelly K, Lostrom ME, Siadak AW. | Infect Immun | 10.1128/iai.58.12.3819-3828.1990 | 1990 | ||
| Protection of immunocompromised mice against lethal infection with Pseudomonas aeruginosa by active or passive immunization with recombinant P. aeruginosa outer membrane protein F and outer membrane protein I fusion proteins. | von Specht BU, Knapp B, Muth G, Broker M, Hungerer KD, Diehl KD, Massarrat K, Seemann A, Domdey H. | Infect Immun | 10.1128/iai.63.5.1855-1862.1995 | 1995 | ||
| Enzymology | Monoclonal antibodies against Pseudomonas aeruginosa outer membrane antigens: isolation and characterization. | Hancock RE, Wieczorek AA, Mutharia LM, Poole K. | Infect Immun | 10.1128/iai.37.1.166-171.1982 | 1982 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #40835 | Collection of Institut Pasteur ; Curators of the CIP; CIP 59.33 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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