Pseudomonas aeruginosa CIP 105925 is an aerobe, mesophilic, Gram-negative prokaryote of the family Pseudomonadaceae.
Gram-negative motile rod-shaped aerobe mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas aeruginosa |
| Full scientific name Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 35880 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 35880 | CIP Medium 72 | Medium recipe at CIP | |||
| 35880 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 98.7 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | + | assimilation | from API 20NE |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68369 | 29016 ChEBI | arginine | + | hydrolysis | from API 20NE |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 35880 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 35880 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68369 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20NE |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68369 | 59640 ChEBI | N-acetylglucosamine | + | assimilation | from API 20NE |
| 35880 | 17632 ChEBI | nitrate | + | reduction | |
| 35880 | 17632 ChEBI | nitrate | + | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 35880 | 16301 ChEBI | nitrite | + | reduction | |
| 35880 | 15882 ChEBI | phenol | + | degradation | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 35880 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 35880 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 35880 | amylase | - | ||
| 68369 | arginine dihydrolase | + | 3.5.3.6 | from API 20NE |
| 35880 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 35880 | caseinase | + | 3.4.21.50 | |
| 35880 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 35880 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 35880 | gelatinase | + | ||
| 68369 | gelatinase | + | from API 20NE | |
| 35880 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 35880 | lipase | - | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 35880 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 35880 | ornithine decarboxylase | - | 4.1.1.17 | |
| 35880 | oxidase | + | ||
| 35880 | protease | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 35880 | tryptophan deaminase | - | ||
| 35880 | tween esterase | + | ||
| 35880 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||
| @ref | 59006 | ||||||||||||||||||||||||||||||||||||||||||
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| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35880 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 35880 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 236_Rw196_contigs_500 assembly for Pseudomonas aeruginosa | contig | 287 | 64.16 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.70 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 91.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 77.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.84 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 86.03 | no |
| 125438 | aerobic | aerobicⓘ | yes | 95.74 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.30 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 91.96 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
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| Alginate Films Enriched in Raspberry and/or Black Currant Seed Oils as Active Food Packaging. | Kowalonek J, Lukomska B, Lukomska O, Stachowiak-Trojanowska N. | Molecules | 10.3390/molecules29092012 | 2024 | ||
| Tanshinones target drug-resistant tuberculosis: efficacy, selectivity, and potential mechanism of action. | Polinario G, Rosa MABC, Campos DL, Moraes LLS, de Campos MMA, Silva IGM, Barros-Cordeiro KB, Bao SN, Pavan FR. | RSC Med Chem | 10.1039/d5md00637f | 2025 | ||
| Deployment of a Novel Organic Acid Compound Disinfectant against Common Foodborne Pathogens. | Folliero V, Ricciardi M, Dell'Annunziata F, Pironti C, Galdiero M, Franci G, Motta O, Proto A. | Toxics | 10.3390/toxics10120768 | 2022 | ||
| Identification of Coumarins and Antimicrobial Potential of Ethanolic Extracts of Dipteryx odorata and Dipteryx punctata. | Sousa BCM, Castro SP, Lourido KA, Kasper AAM, Paulino GDS, Delarmelina C, Duarte MCT, Sartoratto A, Vieira TA, Lustosa DC, Barata LES. | Molecules | 10.3390/molecules27185837 | 2022 | ||
| Antimicrobial peptide thanatin fused endolysin PA90 (Tha-PA90) for the control of Acinetobacter baumannii infection in mouse model. | Lim J, Myung H, Lim D, Song M. | J Biomed Sci | 10.1186/s12929-024-01027-4 | 2024 | ||
| Characterization of Three Different Endolysins Effective against Gram-Negative Bacteria. | Jeong TH, Hong HW, Kim MS, Song M, Myung H. | Viruses | 10.3390/v15030679 | 2023 | ||
| Seasonal Chemical Variability and Antimicrobial, Anti-Proliferative Potential of Essential Oils from Baccharis uncinella, B. retusa, and B. calvescens (Asteraceae). | Dlugoviet TF, Ferriani AP, Hendges APPK, Camargo RG, Duarte MCT, Duarte RMT, Ruiz ALTG, Nagata N, Marques FA, Sales Maia BHLN. | Plants (Basel) | 10.3390/plants14091311 | 2025 | ||
| Physicochemical and Antibacterial Properties of Alginate Films Containing Tansy (Tanacetum vulgare L.) Essential Oil. | Kowalonek J, Stachowiak N, Bolczak K, Richert A. | Polymers (Basel) | 10.3390/polym15020260 | 2023 | ||
| Impact of Microencapsulation on Ocimum gratissimum L. Essential Oil: Antimicrobial, Antioxidant Activities, and Chemical Composition. | Granados ADPF, Duarte MCT, Noguera NH, Lima DC, Rodrigues RAF. | Foods | 10.3390/foods13193122 | 2024 | ||
| Bactericidal Effect of Cecropin A Fused Endolysin on Drug-Resistant Gram-Negative Pathogens. | Lim J, Hong J, Jung Y, Ha J, Kim H, Myung H, Song M. | J Microbiol Biotechnol | 10.4014/jmb.2205.05009 | 2022 | ||
| Solving the plastic dilemma: the fungal and bacterial biodegradability of polyurethanes. | Bhavsar P, Bhave M, Webb HK. | World J Microbiol Biotechnol | 10.1007/s11274-023-03558-8 | 2023 | ||
| Broad-Spectrum Antimicrobial Activity of Oftasecur and Visuprime Ophthalmic Solutions. | Dell'Annunziata F, Morone MV, Gioia M, Cione F, Galdiero M, Rosa N, Franci G, De Bernardo M, Folliero V. | Microorganisms | 10.3390/microorganisms11020503 | 2023 | ||
| Synthesis of Copper Nanoparticles Stabilized with Organic Ligands and Their Antimicrobial Properties. | Jardon-Maximino N, Perez-Alvarez M, Cadenas-Pliego G, Lugo-Uribe LE, Cabello-Alvarado C, Mata-Padilla JM, Barriga-Castro ED. | Polymers (Basel) | 10.3390/polym13172846 | 2021 | ||
| Studies Regarding Antimicrobial Properties of Some Microbial Polyketides Derived from Monascus Strains. | Albisoru D, Radu N, Pirvu LC, Stefaniu A, Babeanu N, Stoica R, Mihai DP. | Antibiotics (Basel) | 10.3390/antibiotics13111092 | 2024 | ||
| Assessing Antimicrobial Efficacy on Plastics and Other Non-Porous Surfaces: A Closer Look at Studies Using the ISO 22196:2011 Standard. | Bento de Carvalho T, Barbosa JB, Teixeira P. | Biology (Basel) | 10.3390/biology13010059 | 2024 | ||
| Evaluation of some in vitro bioactivities of sunflower phenolic compounds. | Alexandrino TD, da Silva MG, Ferrari RA, Ruiz ALTG, Duarte RMT, Simabuco FM, Bezerra RMN, Pacheco MTB. | Curr Res Food Sci | 10.1016/j.crfs.2021.09.007 | 2021 | ||
| Complete genome of Pseudomonas aeruginosa phage PA26. | Kim MS, Cha KE, Myung H. | J Virol | 10.1128/jvi.01630-12 | 2012 | ||
| Genetics | Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes. | Weiser R, Green AE, Bull MJ, Cunningham-Oakes E, Jolley KA, Maiden MCJ, Hall AJ, Winstanley C, Weightman AJ, Donoghue D, Amezquita A, Connor TR, Mahenthiralingam E. | Microb Genom | 10.1099/mgen.0.000276 | 2019 | |
| Latent Tuberculosis: A Promising New Compound to Treat Non-Replicating and Intramacrophagic Mycobacteria. | Campos DL, Demarqui FM, Solcia MC, de Souza PC, da Silva Maia PI, Deflon VM, Pavan FR. | Biomedicines | 10.3390/biomedicines10102398 | 2022 | ||
| Outer Membrane Vesicles Derived from Klebsiella pneumoniae Are a Driving Force for Horizontal Gene Transfer. | Dell'Annunziata F, Dell'Aversana C, Doti N, Donadio G, Dal Piaz F, Izzo V, De Filippis A, Galdiero M, Altucci L, Boccia G, Galdiero M, Folliero V, Franci G. | Int J Mol Sci | 10.3390/ijms22168732 | 2021 | ||
| Obtaining and Characterizing Composite Biomaterials of Animal Resources with Potential Applications in Regenerative Medicine. | Babeanu N, Radu N, Enascuta CE, Alexandrescu E, Ganciarov M, Mohammed MSO, Suica-Bunghez IR, Senin R, Ursu M, Bostan M. | Polymers (Basel) | 10.3390/polym14173544 | 2022 | ||
| Antibacterial and Anti-Inflammatory Properties of ZnO Nanoparticles Synthesized by a Green Method Using Sargassum Extracts. | Lopez-Miranda JL, Molina GA, Gonzalez-Reyna MA, Espana-Sanchez BL, Esparza R, Silva R, Estevez M. | Int J Mol Sci | 10.3390/ijms24021474 | 2023 | ||
| Bactericidal and Fungistatic Properties of LDPE Modified with a Biocide Containing Metal Nanoparticles. | Janczak K, Kosmalska D, Kaczor D, Raszkowska-Kaczor A, Wedderburn L, Malinowski R. | Materials (Basel) | 10.3390/ma14154228 | 2021 | ||
| Biological Properties of Aloysia gratissima (Gillies & Hook.) Tronc. (Verbenaceae). | Alijar Souza M, Petry F, Vidor Morgan L, Dal Magro J, Muller LG. | Evid Based Complement Alternat Med | 10.1155/2022/1119435 | 2022 | ||
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| Phylogeny | QUANTITATIVE APPROACH TO THE STUDY OF BACTERIAL SPECIES. | LISTON J, WIEBE W, COLWELL RR. | J Bacteriol | 10.1128/jb.85.5.1061-1070.1963 | 1963 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #35880 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105925 |
| #59006 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50823 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data