Pseudomonas aeruginosa CCUG 51971 is a prokaryote that was isolated from Human urine,Greek citizen.
genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas aeruginosa |
| Full scientific name Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125438 | aerobe | 95.888 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | + | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | + | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | + | assimilation | from API 20NE |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Fluids | #Urine | |
| #Infection | #Patient | - |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 59387 | Human urine,Greek citizen | 2001-11-01 | Stockholm | Sweden | SWE | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM819548v1 assembly for Pseudomonas aeruginosa CCUG 51971 | complete | 287 | 97.83 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 90.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 61.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.86 | no |
| 125438 | aerobic | aerobicⓘ | yes | 95.89 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 86.45 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.30 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 92.74 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Responses of carbapenemase-producing and non-producing carbapenem-resistant Pseudomonas aeruginosa strains to meropenem revealed by quantitative tandem mass spectrometry proteomics. | Salva-Serra F, Jaen-Luchoro D, Marathe NP, Adlerberth I, Moore ERB, Karlsson R. | Front Microbiol | 10.3389/fmicb.2022.1089140 | 2022 | ||
| Genetics | Novel resistance ICEs carrying the blaFIM-1 metallo-beta-lactamase gene from an ST235 Pseudomonas aeruginosa sublineage. | Antonelli A, Coppi M, Bonaiuto C, Giovacchini N, Vaggelli G, Farese A, Pollini S, Rossolini GM. | Antimicrob Agents Chemother | 10.1128/aac.01205-23 | 2024 | |
| Genetics | MultiStageSearch: An Iterative Workflow for Unbiased Taxonomic Analysis of Pathogens Using Proteogenomics. | Pipart J, Holstein T, Martens L, Muth T. | J Proteome Res | 10.1021/acs.jproteome.4c00901 | 2025 | |
| Genetics | Microbiological and molecular studies on a multidrug-resistant Pseudomonas aeruginosa from a liver transplant patient with urinary tract infection in Egypt. | Shaaban MT, Abdel-Raouf M, Zayed M, Emara MA. | BMC Microbiol | 10.1186/s12866-024-03318-0 | 2024 | |
| Proteome | Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach. | Alves G, Ogurtsov A, Karlsson R, Jaen-Luchoro D, Pineiro-Iglesias B, Salva-Serra F, Andersson B, Moore ERB, Yu YK. | J Am Soc Mass Spectrom | 10.1021/jasms.1c00347 | 2022 | |
| Structural and mechanistic insights into the CRISPR inhibition of AcrIF7. | Kim I, Koo J, An SY, Hong S, Ka D, Kim EH, Bae E, Suh JY. | Nucleic Acids Res | 10.1093/nar/gkaa690 | 2020 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #59387 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51971 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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