Strain identifier
BacDive ID: 161304
Type strain: 
Species: Pseudomonas aeruginosa
Strain history: K. Komagata <-- R. Hugh 1449 <-- ATCC 14210 <-- J. C. Hoff and C. Drake 73.
NCBI tax ID(s): 287 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 161304
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Pseudomonas aeruginosa JCM 13054 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Leg ulcer.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 67770
- history: K. Komagata <-- R. Hugh 1449 <-- ATCC 14210 <-- J. C. Hoff and C. Drake 73.
doi: 10.13145/bacdive161304.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 92.2 | |
| 125438 | 90.34 | yes | |
| 125438 | negative | 97.5 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125438
- oxygen tolerance: aerobe
- confidence: 93.851
spore formation
- @ref: 125439
- spore formation: no
- confidence: 97.5
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Leg ulcer
- geographic location: Spokane, WA
- country: USA
- origin.country: USA
- continent: North America
taxonmaps
- @ref: 69479
- File name: preview.99_42.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_36;97_37;98_40;99_42&stattab=map
- Last taxonomy: Pseudomonas aeruginosa
- 16S sequence: LC507951
- Sequence Identity:
- Total samples: 22757
- soil counts: 1669
- aquatic counts: 5046
- animal counts: 14748
- plant counts: 1294
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas aeruginosa JCM 13054 gene for 16S rRNA, partial sequence
- accession: LC507951
- length: 1458
- database: nuccore
- NCBI tax ID: 287
Genome sequences
- @ref: 66792
- description: Pseudomonas aeruginosa strain DVT401
- accession: 287.11591
- assembly level: complete
- database: patric
- NCBI tax ID: 287
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.297 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.928 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 93.851 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 90.34 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 86.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 92.2 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 75.3 |
External links
@ref: 67770
culture collection no.: JCM 13054, ATCC 14210
straininfo link
- @ref: 113351
- straininfo: 36002
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113351 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID36002.1 |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |