Strain identifier
BacDive ID: 161304
Type strain: 
Species: Pseudomonas aeruginosa
Strain history: K. Komagata <-- R. Hugh 1449 <-- ATCC 14210 <-- J. C. Hoff and C. Drake 73.
NCBI tax ID(s): 287 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161304
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Pseudomonas aeruginosa JCM 13054 is a mesophilic, motile bacterium that was isolated from Leg ulcer.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 67770
- history: K. Komagata <-- R. Hugh 1449 <-- ATCC 14210 <-- J. C. Hoff and C. Drake 73.
doi: 10.13145/bacdive161304.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 99.366 | |
| 69480 | 99.992 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.972 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Leg ulcer
- geographic location: Spokane, WA
- country: USA
- origin.country: USA
- continent: North America
taxonmaps
- @ref: 69479
- File name: preview.99_42.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_36;97_37;98_40;99_42&stattab=map
- Last taxonomy: Pseudomonas aeruginosa
- 16S sequence: LC507951
- Sequence Identity:
- Total samples: 22757
- soil counts: 1669
- aquatic counts: 5046
- animal counts: 14748
- plant counts: 1294
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas aeruginosa JCM 13054 gene for 16S rRNA, partial sequence
- accession: LC507951
- length: 1458
- database: ena
- NCBI tax ID: 287
Genome sequences
- @ref: 66792
- description: Pseudomonas aeruginosa strain DVT401
- accession: 287.11591
- assembly level: complete
- database: patric
- NCBI tax ID: 287
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.507 | no |
| anaerobic | no | 98.48 | no |
| halophile | no | 91.395 | no |
| spore-forming | no | 93.391 | no |
| glucose-util | yes | 90.538 | no |
| motile | yes | 90.099 | no |
| flagellated | yes | 84.974 | no |
| aerobic | yes | 92.559 | no |
| thermophile | no | 99.832 | yes |
| glucose-ferment | no | 90.76 | no |
External links
@ref: 67770
culture collection no.: JCM 13054, ATCC 14210
straininfo link
- @ref: 113351
- straininfo: 36002
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113351 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID36002.1 |