Salmonella enterica subsp. enterica Hochberg 2460 is a bacterium that was isolated from baby.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Salmonella |
| Species Salmonella enterica subsp. enterica |
| Full scientific name Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3486 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 3486 | positive | growth | 37 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | aerobe | 92.3 |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 3486 | baby | New York | USA | USA | North America |
Global distribution of 16S sequence AF057360 (>99% sequence identity) for Salmonella enterica from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM48676v2 assembly for Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 | complete | 1124961 | 98.96 | ||||
| 66792 | Salmonella enterica enterica sv. Panama ATCC 7378 GCA_000486765 | complete | 1124961 | 98.75 | ||||
| 124043 | ASM1833849v1 assembly for Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 | complete | 1124961 | 74.8 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Salmonella gallinarum 16S ribosomal RNA gene, partial sequence | AF057360 | 1201 | 594 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 92.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 96.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 74.70 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 89.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.24 | no |
| 125438 | aerobic | aerobicⓘ | no | 75.40 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.53 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.87 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Detection of Listeria monocytogenes in foods with a textile organic electrochemical transistor biosensor. | Vizzini P, Beltrame E, Coppede N, Vurro F, Andreatta F, Torelli E, Manzano M. | Appl Microbiol Biotechnol | 10.1007/s00253-023-12543-y | 2023 | ||
| Genomic epidemiology and phenotypic characterisation of Salmonella enterica serovar Panama in Victoria, Australia. | Thakur S, Baines SL, Sia CM, Valcanis M, Judd LM, Howden BP, Newton HJ, Ingle DJ. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0012666 | 2024 | ||
| Genetics | Exploring the genomic and antimicrobial resistance tapestry: comparative insights into Salmonella enterica serotypes Agona, Braenderup, Muenchen, and Panama in Latin American surface waters. | Chen Z, Delgado Suarez EJ, Bonelli RR, Oliveira CJB, Moreno-Switt AI, Adell AD, Reyes-Jara A, Grim CJ, Allard MW, Tallent SM, Brown EW, Bell RL, Toro M, Meng J. | Microbiol Spectr | 10.1128/spectrum.01706-24 | 2025 | |
| Flavorubredoxin, a Candidate Trigger Related to Thrombotic Thrombocytopenic Purpura: Screening of the Complete Genome of a Salmonella enterica Serovar Typhimurium Isolate From an AIDS Case. | Wang Z, Xu H, Gu B, Jin Y, Wang T, Ma J, Lu Y, Yu X, Zheng B, Zhang Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.864087 | 2022 | ||
| Salmonella enterica Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide. | Pulford CV, Perez-Sepulveda BM, Rodwell EV, Weill FX, Baker KS, Hinton JCD. | Infect Immun | 10.1128/iai.00273-19 | 2019 | ||
| Application of a High-Throughput Targeted Sequence AmpliSeq Procedure to Assess the Presence and Variants of Virulence Genes in Salmonella. | Gao R, Huang H, Hamel J, Levesque RC, Goodridge LD, Ogunremi D. | Microorganisms | 10.3390/microorganisms10020369 | 2022 | ||
| Phylogeny | Complete genome sequence of Salmonella enterica serovar Sendai shows H antigen convergence with S. Miami and recent divergence from S. Paratyphi A. | Feng Y, Lin E, Zou S, Chen CL, Chiu CH. | BMC Genomics | 10.1186/s12864-019-5798-7 | 2019 | |
| Phylogeny | Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States. | Rodriguez-Rivera LD, Moreno Switt AI, Degoricija L, Fang R, Cummings CA, Furtado MR, Wiedmann M, den Bakker HC. | BMC Genomics | 10.1186/1471-2164-15-427 | 2014 | |
| Phylogeny | Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. | Timme RE, Pettengill JB, Allard MW, Strain E, Barrangou R, Wehnes C, Van Kessel JS, Karns JS, Musser SM, Brown EW. | Genome Biol Evol | 10.1093/gbe/evt159 | 2013 | |
| PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp. | Cohen HJ, Mechanda SM, Lin W. | Appl Environ Microbiol | 10.1128/aem.62.12.4303-4308.1996 | 1996 | ||
| Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791). | Yao K, Muruvanda T, Roberts RJ, Payne J, Allard MW, Hoffmann M | Genome Announc | 10.1128/genomeA.00133-16 | 2016 |
| #3486 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9145 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive5108.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data