Name: Salmonella enterica subsp. enterica Hochberg 2460
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5108

Type strain:

Species: Salmonella enterica subsp. enterica

Strain Designation: Hochberg 2460

Culture col. no.: DSM 9145, ATCC 7378

Strain history: <- ATCC <- F. Schift; Hochberg 2460

NCBI tax ID(s): 59201 (subspecies)

SI-ID 46376

ATCC 7378, DSM 9145

Other strains from Salmonella enterica subsp. enterica

Section

Salmonella enterica subsp. enterica Hochberg 2460 is a mesophilic, motile bacterium that was isolated from baby.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Salmonella*
	Species	**Salmonella enterica subsp. enterica**
	Full Scientific Name (LPSN)	Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

Synonym

Salmonella choleraesuis subsp. choleraesuis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #69480]	Motility	yes Confidence in %94.377

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3486]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #3486]

Culture medium growth

[Ref.: #3486]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3486]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3486]			growth	37 °C

[Ref.: #3486]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.952

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3486]	Sample type/isolated from	baby
[Ref.: #3486]	Geographic location (country and/or sea, region)	New York
[Ref.: #3486]	Country	USA
[Ref.: #3486]	Country ISO 3 Code	USA
[Ref.: #3486]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Juvenile

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF057360 (>99% sequence identity) for Salmonella enterica from Microbeatlas

Aquatic Samples	2005
Soil Samples	1084
Animal Samples	23018
Plant Samples	1996
Total Samples	28103

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3486]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Salmonella gallinarum 16S ribosomal RNA gene, partial sequence	AF057360	1201	ENA	594 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378	GCA_000486765	complete	GenBank	1124961 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378	1124961.3	wgs	PATRIC	1124961 tax ID	*
[Ref.: #66792]	Salmonella enterica enterica sv. Panama ATCC 7378 GCA_000486765	2558860442	complete	JGI IMG/M	1124961 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 ATCC 7378 NCBI: GCA_000486765.2
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 ATCC 7378 NCBI: GCA_000486765.1
[Ref.: #69480]	motile	yes	91.173	no
[Ref.: #69480]	flagellated	yes	51.312	no
[Ref.: #69480]	gram-positive	no	98.822	no
[Ref.: #69480]	anaerobic	no	90.637	no
[Ref.: #69480]	aerobic	yes	65.712	no
[Ref.: #69480]	halophile	no	93.405	no
[Ref.: #69480]	spore-forming	no	94.304	no
[Ref.: #69480]	thermophile	no	98.808	yes
[Ref.: #69480]	glucose-util	yes	93.095	no
[Ref.: #69480]	glucose-ferment	yes	93.377	no
[Ref.: #69480]	motile	yes	91.173	no
[Ref.: #69480]	flagellated	yes	51.312	no
[Ref.: #69480]	gram-positive	no	98.822	no
[Ref.: #69480]	anaerobic	no	90.637	no
[Ref.: #69480]	aerobic	yes	65.712	no
[Ref.: #69480]	halophile	no	93.405	no
[Ref.: #69480]	spore-forming	no	94.304	no
[Ref.: #69480]	thermophile	no	98.808	yes
[Ref.: #69480]	glucose-util	yes	93.095	no
[Ref.: #69480]	glucose-ferment	yes	93.377	no

Availability in culture collections External links

[Ref.: #3486]

Culture collection no.

DSM 9145, ATCC 7378

[Ref.: #74602]

SI-ID 46376

Literature:

	Title	Authors	Journal	DOI	Year
	Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).	Yao K, Muruvanda T, Roberts RJ, Payne J, Allard MW, Hoffmann M	Genome Announc	10.1128/genomeA.00133-16	2016	*

References

#3486

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9145

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74602

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46376.1 )

* These data were automatically processed and therefore are not curated

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Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 ATCC 7378

Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378 ATCC 7378

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