Salmonella enterica subsp. enterica 775/W is a bacterium of the family Enterobacteriaceae.
genome sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Salmonella |
| Species Salmonella enterica subsp. enterica |
| Full scientific name Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3788 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 3788 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 3788 | positive | growth | 37 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | aerobe | 91.2 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3788 | - | + | + | + | + | - | - | - | - | + | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 3788 | - | + | + | + | + | - | - | - | - | - | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM196942v1 assembly for Salmonella enterica subsp. enterica serovar Senftenberg 775W | complete | 28150 | 98.53 | ||||
| 66792 | ASM48652v2 assembly for Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 | complete | 930772 | 73.82 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 85.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 70.00 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 94.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 91.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.34 | no |
| 125438 | aerobic | aerobicⓘ | no | 73.54 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.13 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 75.61 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| BIOHAZ scientific opinion on the equivalence of an alternative heat treatment process of feathers and down. | EFSA Panel on Biological Hazards (BIOHAZ), Allende A, Alvarez-Ordonez A, Bortolaia V, Bover-Cid S, Dohmen W, Guillier L, Herman L, Jacxsens L, Mughini-Gras L, Nauta M, Ottoson J, Peixe L, Perez-Rodriguez F, Skandamis P, Suffredini E, Griffin J, Escamez PF, Baptista C, Correia S, De Cesare A. | EFSA J | 10.2903/j.efsa.2025.9270 | 2025 | ||
| Recovery Estimation of Dried Foodborne Pathogens Is Directly Related to Rehydration Kinetics. | Lang E, Zoz F, Iaconelli C, Guyot S, Alvarez-Martin P, Beney L, Perrier-Cornet JM, Gervais P. | PLoS One | 10.1371/journal.pone.0160844 | 2016 | ||
| Caco-2 Invasion by Cronobacter sakazakii and Salmonella enterica Exposed to Drying and Heat Treatments in Dried State in Milk Powder. | Lang E, Guyot S, Alvarez-Martin P, Perrier-Cornet JM, Gervais P. | Front Microbiol | 10.3389/fmicb.2017.01893 | 2017 | ||
| Cellular Injuries in Cronobacter sakazakii CIP 103183T and Salmonella enterica Exposed to Drying and Subsequent Heat Treatment in Milk Powder. | Lang E, Guyot S, Peltier C, Alvarez-Martin P, Perrier-Cornet JM, Gervais P. | Front Microbiol | 10.3389/fmicb.2018.00475 | 2018 | ||
| Metabolism | Removal of free extracellular DNA from environmental samples by ethidium monoazide and propidium monoazide. | Wagner AO, Malin C, Knapp BA, Illmer P. | Appl Environ Microbiol | 10.1128/aem.02288-07 | 2008 | |
| Enzymology | Evaluation of the use of PCR and reverse transcriptase PCR for detection of pathogenic bacteria in biosolids from anaerobic digestors and aerobic composters. | Burtscher C, Wuertz S. | Appl Environ Microbiol | 10.1128/aem.69.8.4618-4627.2003 | 2003 | |
| Identification and distribution of new candidate T6SS effectors encoded in Salmonella Pathogenicity Island 6. | Blondel CJ, Amaya FA, Bustamante P, Santiviago CA, Pezoa D. | Front Microbiol | 10.3389/fmicb.2023.1252344 | 2023 | ||
| Innovative Multiplex PCR Assay for Detection of tlh, trh, and tdh Genes in Vibrio parahaemolyticus with Reference to the U.S. FDA's Bacteriological Analytical Manual (BAM). | Park SB, Zhang Y. | Pathogens | 10.3390/pathogens13090774 | 2024 | ||
| Development of Multienzyme Isothermal Rapid Amplification (MIRA) Combined with Lateral-Flow Dipstick (LFD) Assay to Detect Species-Specific tlh and Pathogenic trh and tdh Genes of Vibrio parahaemolyticus. | Park SB, Zhang Y. | Pathogens | 10.3390/pathogens13010057 | 2024 | ||
| Lethality Validation for Human Pathogenic Salmonella enterica on Chicken Feathers and Blood during Simulated Commercial Low-Temperature Dry Rendering. | Mvuyekure ALS, Moreira RG, Taylor TM. | Microorganisms | 10.3390/microorganisms11082071 | 2023 | ||
| Flavorubredoxin, a Candidate Trigger Related to Thrombotic Thrombocytopenic Purpura: Screening of the Complete Genome of a Salmonella enterica Serovar Typhimurium Isolate From an AIDS Case. | Wang Z, Xu H, Gu B, Jin Y, Wang T, Ma J, Lu Y, Yu X, Zheng B, Zhang Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.864087 | 2022 | ||
| Bio-Mapping of Microbial Indicators and Pathogen Quantitative Loads in Commercial Broiler Processing Facilities in South America. | Vargas DA, Betancourt-Barszcz GK, Chavez-Velado DR, Sanchez A, Bueno Lopez R, Sanchez-Plata MX. | Foods | 10.3390/foods12193600 | 2023 | ||
| Complete and Assembled Genome Sequence of Salmonella enterica subsp. enterica Serotype Senftenberg N17-509, a Strain Lacking Salmonella Pathogen Island 1. | Stevens MJA, Zurfluh K, Althaus D, Corti S, Lehner A, Stephan R. | Genome Announc | 10.1128/genomea.00156-18 | 2018 | ||
| Genetics | Salmonella Pathogenicity Island 1 (SPI-1): The Evolution and Stabilization of a Core Genomic Type Three Secretion System. | Lerminiaux NA, MacKenzie KD, Cameron ADS. | Microorganisms | 10.3390/microorganisms8040576 | 2020 | |
| Validating Thermal Lethality to Salmonella enterica in Chicken Blood by Simulated Commercial Rendering. | Wong de la Rosa C, Daniels KA, Moreira RG, Kerth CR, Taylor TM. | Microorganisms | 10.3390/microorganisms8122009 | 2020 | ||
| In-Plant Intervention Validation of a Novel Ozone Generation Technology (Bio-Safe) Compared to Lactic Acid in Variety Meats. | Vargas DA, Casas DE, Chavez-Velado DR, Jimenez RL, Betancourt-Barszcz GK, Randazzo E, Lynn D, Echeverry A, Brashears MM, Sanchez-Plata MX, Miller MF. | Foods | 10.3390/foods10092106 | 2021 | ||
| Genomic Characterisation of a Multiple Drug Resistant IncHI2 ST4 Plasmid in Escherichia coli ST744 in Australia. | Zingali T, Chapman TA, Webster J, Roy Chowdhury P, Djordjevic SP. | Microorganisms | 10.3390/microorganisms8060896 | 2020 | ||
| Biotechnology | Pet Food Factory Isolates of Salmonella Serotypes Do Not Demonstrate Enhanced Biofilm Formation Compared to Serotype-Matched Clinical and Veterinary Isolates. | Bashir A, Azeem A, Stedman Y, Hilton AC. | Biomed Res Int | 10.1155/2019/8569459 | 2019 | |
| Behavior of the Biological Control Agent Bacillus thuringiensis subsp. aizawai ABTS-1857 and Salmonella enterica on Spinach Plants and Cut Leaves. | Zhao X, da Silva MBR, Van der Linden I, Franco BDGM, Uyttendaele M. | Front Microbiol | 10.3389/fmicb.2021.626029 | 2021 | ||
| Combined Effect of Temperature and Relative Humidity on the Survival of Salmonella Isolates on Stainless Steel Coupons. | Bashir A, Lambert PA, Stedman Y, Hilton AC. | Int J Environ Res Public Health | 10.3390/ijerph19020909 | 2022 | ||
| Genetics | Locus of Heat Resistance (LHR) in Meat-Borne Escherichia coli: Screening and Genetic Characterization. | Guragain M, Brichta-Harhay DM, Bono JL, Bosilevac JM. | Appl Environ Microbiol | 10.1128/aem.02343-20 | 2021 | |
| Genetics | Characterisation of Early Positive mcr-1 Resistance Gene and Plasmidome in Escherichia coli Pathogenic Strains Associated with Variable Phylogroups under Colistin Selection. | Macori G, Nguyen SV, Naithani A, Hurley D, Bai L, El Garch F, Woehrle F, Miossec C, Roques B, O'Gaora P, Bono JL, Fanning S. | Antibiotics (Basel) | 10.3390/antibiotics10091041 | 2021 | |
| Suppression of pathogens in properly refrigerated raw milk. | Coleman ME, Oscar TP, Negley TL, Stephenson MM. | PLoS One | 10.1371/journal.pone.0289249 | 2023 | ||
| Biotechnology | Evaluation of the Thermo Scientific SureTect Salmonella Species PCR Assay in a Broad Range of Foods and Select Environmental Surfaces: Pre-Collaborative and Collaborative Study: First Action 2021.02. | Bastin B, Thompson W, Benzinger MJ, Crowley ES, Leonte AM, Vandoros EJ, Thomas D, Hughes A, Crabtree D, Evans K, Sohier D. | J AOAC Int | 10.1093/jaoacint/qsab122 | 2022 | |
| UV-C LED Irradiation Reduces Salmonella on Chicken and Food Contact Surfaces. | Calle A, Fernandez M, Montoya B, Schmidt M, Thompson J. | Foods | 10.3390/foods10071459 | 2021 | ||
| Bioactive Azadirachta indica and Melia azedarach leaves extracts with anti-SARS-CoV-2 and antibacterial activities. | Hemdan BA, Mostafa A, Elbatanony MM, El-Feky AM, Paunova-Krasteva T, Stoitsova S, El-Liethy MA, El-Taweel GE, Abu Mraheil M. | PLoS One | 10.1371/journal.pone.0282729 | 2023 | ||
| Short genome report of cellulose-producing commensal Escherichia coli 1094. | Bernal-Bayard J, Gomez-Valero L, Wessel A, Khanna V, Bouchier C, Ghigo JM. | Stand Genomic Sci | 10.1186/s40793-018-0316-0 | 2018 | ||
| Plant-Scale Validation of Physical Heat Treatment of Poultry Litter Composts Using Surrogate and Indicator Microorganisms for Salmonella. | Wang H, Chen Z, Dharmasena M, Greene AK, Gardener BM, Holden B, Jiang X. | Appl Environ Microbiol | 10.1128/aem.02234-20 | 2021 | ||
| Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America. | Haley BJ, Kim SW, Pettengill J, Luo Y, Karns JS, Van Kessel JA. | PLoS One | 10.1371/journal.pone.0161225 | 2016 | ||
| Development of a Novel Phagomagnetic-Assisted Isothermal DNA Amplification System for Endpoint Electrochemical Detection of Listeria monocytogenes. | Maciel C, Silva NFD, Teixeira P, Magalhaes JMCS. | Biosensors (Basel) | 10.3390/bios13040464 | 2023 | ||
| Biotechnology | Validation of the One Broth One Plate for Salmonella Method for Detection of Salmonella Spp. in Select Food and Environmental Samples: AOAC Performance Tested MethodSM 102002. | Alles S, Roman B, Le QN, Kurteu M, Elmerhebi E, Potter C, Mozola M, Thompson W, Bastin B, Donofrio R. | J AOAC Int | 10.1093/jaoacint/qsaa149 | 2021 | |
| Horizontal Transmission of Stress Resistance Genes Shape the Ecology of Beta- and Gamma-Proteobacteria. | Kamal SM, Simpson DJ, Wang Z, Ganzle M, Romling U. | Front Microbiol | 10.3389/fmicb.2021.696522 | 2021 | ||
| Metabolism | Functional Analysis of Genes Comprising the Locus of Heat Resistance in Escherichia coli. | Mercer R, Nguyen O, Ou Q, McMullen L, Ganzle MG. | Appl Environ Microbiol | 10.1128/aem.01400-17 | 2017 | |
| Salmonella Presence and Risk Mitigation in Pet Foods: A Growing Challenge with Implications for Human Health. | Dhakal J, Cancio LPM, Deliephan A, Chaves BD, Tubene S. | Compr Rev Food Sci Food Saf | 10.1111/1541-4337.70060 | 2024 | ||
| Alkaloid-Rich Crude Extracts, Fractions and Piperamide Alkaloids of Piper guineense Possess Promising Antibacterial Effects. | Mgbeahuruike EE, Fyhrquist P, Vuorela H, Julkunen-Tiitto R, Holm Y. | Antibiotics (Basel) | 10.3390/antibiotics7040098 | 2018 | ||
| Phylogeny | Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. | Timme RE, Pettengill JB, Allard MW, Strain E, Barrangou R, Wehnes C, Van Kessel JS, Karns JS, Musser SM, Brown EW. | Genome Biol Evol | 10.1093/gbe/evt159 | 2013 | |
| Pathogenicity | Broad-host-range Salmonella bacteriophage STP4-a and its potential application evaluation in poultry industry. | Li M, Lin H, Jing Y, Wang J. | Poult Sci | 10.1016/j.psj.2020.03.051 | 2020 | |
| Genetics | Assembly and Characterization of a Pathogen Strain Collection for Produce Safety Applications: Pre-growth Conditions Have a Larger Effect on Peroxyacetic Acid Tolerance Than Strain Diversity. | Harrand AS, Kovac J, Carroll LM, Guariglia-Oropeza V, Kent DJ, Wiedmann M. | Front Microbiol | 10.3389/fmicb.2019.01223 | 2019 | |
| Phylogeny | Application of the modular approach to an in-house validation study of real-time PCR methods for the detection and serogroup determination of verocytotoxigenic Escherichia coli. | Kagkli DM, Weber TP, Van den Bulcke M, Folloni S, Tozzoli R, Morabito S, Ermolli M, Gribaldo L, Van den Eede G. | Appl Environ Microbiol | 10.1128/aem.05357-11 | 2011 | |
| Enzymology | Accessory genome of the multi-drug resistant ocular isolate of Pseudomonas aeruginosa PA34. | Subedi D, Kohli GS, Vijay AK, Willcox M, Rice SA. | PLoS One | 10.1371/journal.pone.0215038 | 2019 | |
| Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia sp. Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid. | Leonard SR, Mammel MK, Rasko DA, Lacher DW. | Appl Environ Microbiol | 10.1128/aem.01129-16 | 2016 | ||
| Stress | Thermal inactivation of desiccation-adapted Salmonella spp. in aged chicken litter. | Chen Z, Diao J, Dharmasena M, Ionita C, Jiang X, Rieck J. | Appl Environ Microbiol | 10.1128/aem.01969-13 | 2013 | |
| Effects of Chicken Litter Storage Time and Ammonia Content on Thermal Resistance of Desiccation-Adapted Salmonella spp. | Chen Z, Wang H, Ionita C, Luo F, Jiang X. | Appl Environ Microbiol | 10.1128/aem.01876-15 | 2015 | ||
| Enzymology | Towards a pathogenic Escherichia coli detection platform using multiplex SYBR®Green Real-time PCR methods and high resolution melting analysis. | Kagkli DM, Folloni S, Barbau-Piednoir E, Van den Eede G, Van den Bulcke M. | PLoS One | 10.1371/journal.pone.0039287 | 2012 | |
| Enzymology | Use of single-strand conformation polymorphism analysis to examine the variability of the rpoS sequence in environmental isolates of Salmonellae. | Jordan SJ, Dodd CE, Stewart GS. | Appl Environ Microbiol | 10.1128/aem.65.8.3582-3587.1999 | 1999 | |
| Genetics | Complete Genome Sequence of the Novel Virulent Phage PMBT28 with Lytic Activity against Thermotolerant Salmonella enterica subsp. enterica Serovar Senftenberg ATCC 43845. | Koberg S, Brinks E, Albrecht V, Neve H, Franz CMAP | Genome Announc | 10.1128/genomeA.00568-18 | 2018 | |
| Genetics | Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms. | Nguyen SV, Harhay GP, Bono JL, Smith TP, Harhay DM | mSystems | 10.1128/mSystems.00190-16 | 2017 | |
| Biotechnology | Predicting thermal inactivation in media of different pH of Salmonella grown at different temperatures. | Manas P, Pagan R, Raso J, Condon S | Int J Food Microbiol | 10.1016/s0168-1605(03)00049-7 | 2003 | |
| Biotechnology | Inactivation of Salmonella Enteritidis, Salmonella Typhimurium, and Salmonella Senftenberg by ultrasonic waves under pressure. | Manas P, Pagan R, Raso J, Sala FJ, Condon S | J Food Prot | 10.4315/0362-028x-63.4.451 | 2000 |
| #3788 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10062 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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