Salmonella enterica subsp. enterica 1348 is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Salmonella |
| Species Salmonella enterica subsp. enterica |
| Full scientific name Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5574 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 34999 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 119050 | CIP Medium 72 | Medium recipe at CIP | |||
| 119050 | CIP Medium 3 | Medium recipe at CIP |
| 119050 | Oxygen tolerancefacultative anaerobe |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119050 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119050 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119050 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119050 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 119050 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119050 | ornithine decarboxylase | + | 4.1.1.17 | |
| 119050 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 119050 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
Global distribution of 16S sequence AB626116 (>99% sequence identity) for Salmonella enterica from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM1611783v1 assembly for Salmonella enterica FDAARGOS_879 | chromosome | 28901 | 86.85 | ||||
| 124043 | ASM3954497v1 assembly for Salmonella enterica subsp. enterica NBRC 105684 | contig | 59201 | 67.52 | ||||
| 67770 | ASM320131v1 assembly for Salmonella enterica DSM 14846 | scaffold | 28901 | 65.2 | ||||
| 66792 | 57940_H01 assembly for Salmonella enterica subsp. enterica serovar Choleraesuis NCTC5735 | contig | 119912 | 52.66 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Salmonella choleraesuis strain DSM 14846 16S ribosomal RNA gene, partial sequence | EU014681 | 1413 | 28901 | ||
| 67770 | Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: JCM 1651 | AB626116 | 1464 | 59201 | ||
| 124043 | Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: NBRC 105684. | AB682260 | 1467 | 59201 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 88.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 85.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 71.70 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 75.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.07 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.15 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.43 | no |
| 125438 | aerobic | aerobicⓘ | no | 76.05 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.53 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes. | Bae JW, Rhee SK, Nam YD, Park YH. | Nucleic Acids Res | 10.1093/nar/gni112 | 2005 | ||
| Transcriptome | Fast DNA serotyping and antimicrobial resistance gene determination of salmonella enterica with an oligonucleotide microarray-based assay. | Braun SD, Ziegler A, Methner U, Slickers P, Keiling S, Monecke S, Ehricht R. | PLoS One | 10.1371/journal.pone.0046489 | 2012 | |
| Biological and genomic characterization of a polyvalent bacteriophage (S19cd) strongly inhibiting Salmonella enterica serovar Choleraesuis. | Lin Y, Liu Y, Zhang Y, Yuan W, Wang D, Zhu W. | Vet Microbiol | 10.1016/j.vetmic.2023.109822 | 2023 | ||
| Rapid, low-cost colorimetric detection of Salmonella Typhi bacteriophages for environmental surveillance. | da Silva KE, Yokoyama T, Naga SR, Maharjan M, Pereira Dos Santos PC, Fisher KN, Coulibaly JT, Yang MZ, Nelson EJ, Charles RC, Shafer K, Igiraneza B-L, Yusuf S, Mulder E, Neuzil K, Bogoch II, Shrestha R, Tamrakar D, Andrews JR. | mBio | 10.1128/mbio.01963-25 | 2025 | ||
| Novel Heptaplex PCR-Based Diagnostics for Enteric Fever Caused by Typhoidal Salmonella Serovars and Its Applicability in Clinical Blood Culture. | Kim HJ, Jung Y, Kim MJ, Kim HY. | J Microbiol Biotechnol | 10.4014/jmb.2307.07031 | 2023 | ||
| The Effect of Indole-3-Lactic Acid from Lactiplantibacillus plantarum ZJ316 on Human Intestinal Microbiota In Vitro. | Zhou Q, Xie Z, Wu D, Liu L, Shi Y, Li P, Gu Q. | Foods | 10.3390/foods11203302 | 2022 | ||
| Detection of Salmonella Typhi bacteriophages in surface waters as a scalable approach to environmental surveillance. | Shrestha S, Da Silva KE, Shakya J, Yu AT, Katuwal N, Shrestha R, Shakya M, Shahi SB, Naga SR, LeBoa C, Aiemjoy K, Bogoch II, Saha S, Tamrakar D, Andrews JR. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0011912 | 2024 | ||
| Biotechnology | Isolation, characterization and application of bacteriophage PSDA-2 against Salmonella Typhimurium in chilled mutton. | Sun Z, Mandlaa, Wen H, Ma L, Chen Z. | PLoS One | 10.1371/journal.pone.0262946 | 2022 | |
| Enzymology | Purification, characterization, and mode of action of Sakacin ZFM225, a novel bacteriocin from Lactobacillus sakei ZFM225. | Shentu H, Ye P, Zhou Q, Li P, Gu Q. | Biochem Biophys Rep | 10.1016/j.bbrep.2023.101494 | 2023 | |
| Genetics | Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes. | Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY. | Foods | 10.3390/foods10112839 | 2021 | |
| Enzymology | Purification and characterization of bacteriocin produced by a strain of Lacticaseibacillus rhamnosus ZFM216. | Wu D, Dai M, Shi Y, Zhou Q, Li P, Gu Q. | Front Microbiol | 10.3389/fmicb.2022.1050807 | 2022 | |
| Enzymology | Pathogenic Escherichia coli-Specific Bacteriophages and Polyvalent Bacteriophages in Piglet Guts with Increasing Coliphage Numbers after Weaning. | Lin Y, Zhou B, Zhu W. | Appl Environ Microbiol | 10.1128/aem.00966-21 | 2021 | |
| Potential Nitrogen-Based Heterocyclic Compounds for Treating Infectious Diseases: A Literature Review. | Aatif M, Raza MA, Javed K, Nashre-Ul-Islam SM, Farhan M, Alam MW. | Antibiotics (Basel) | 10.3390/antibiotics11121750 | 2022 | ||
| Application of Scutellariae radix, Gardeniae fructus, and Probiotics to Prevent Salmonella enterica Serovar Choleraesuis Infection in Swine. | Chang CH, Chen YS, Chiou MT, Su CH, Chen DS, Tsai CE, Yu B, Hsu YM. | Evid Based Complement Alternat Med | 10.1155/2013/568528 | 2013 | ||
| Genetics | Development of a Genoserotyping Method for Salmonella Infantis Detection on the Basis of Pangenome Analysis. | Yang SM, Baek J, Kim E, Kim HB, Ko S, Kim D, Yoon H, Kim HY. | Microorganisms | 10.3390/microorganisms9010067 | 2020 | |
| Rapid Detection of Salmonella Enteritidis, Typhimurium, and Thompson by Specific Peak Analysis Using Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry. | Yang SM, Kim E, Kim D, Baek J, Yoon H, Kim HY. | Foods | 10.3390/foods10050933 | 2021 | ||
| Strategy for Accurate Detection of Escherichia Coli O157:H7 in Ground Pork Using a Lateral Flow Immunoassay. | Cheng S, Chen MH, Zhang GG, Yu ZB, Liu DF, Xiong YH, Wei H, Lai WH. | Sensors (Basel) | 10.3390/s17040753 | 2017 | ||
| Phylogeny | Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR. | Kim HJ, Park SH, Kim HY. | Appl Environ Microbiol | 10.1128/aem.00138-06 | 2006 | |
| Enzymology | Rapid and simple detection of methicillin-resistance Staphylococcus aureus by orfX loop-mediated isothermal amplification assay. | Su J, Liu X, Cui H, Li Y, Chen D, Li Y, Yu G. | BMC Biotechnol | 10.1186/1472-6750-14-8 | 2014 | |
| Pathogenicity | Ciprofloxacin-resistant Salmonella enterica Typhimurium and Choleraesuis from pigs to humans, Taiwan. | Hsueh PR, Teng LJ, Tseng SP, Chang CF, Wan JH, Yan JJ, Lee CM, Chuang YC, Huang WK, Yang D, Shyr JM, Yu KW, Wang LS, Lu JJ, Ko WC, Wu JJ, Chang FY, Yang YC, Lau YJ, Liu YC, Liu CY, Ho SW, Luh KT. | Emerg Infect Dis | 10.3201/eid1001.030171 | 2004 | |
| A novel multiplex PCR discriminates Bacillus anthracis and its genetically related strains from other Bacillus cereus group species. | Ogawa H, Fujikura D, Ohnuma M, Ohnishi N, Hang'ombe BM, Mimuro H, Ezaki T, Mweene AS, Higashi H. | PLoS One | 10.1371/journal.pone.0122004 | 2015 | ||
| Biotechnology | Detection of Salmonella spp. in oysters by PCR. | Bej AK, Mahbubani MH, Boyce MJ, Atlas RM. | Appl Environ Microbiol | 10.1128/aem.60.1.368-373.1994 | 1994 | |
| PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp. | Cohen HJ, Mechanda SM, Lin W. | Appl Environ Microbiol | 10.1128/aem.62.12.4303-4308.1996 | 1996 | ||
| Enzymology | Evaluation of a simple blood culture amplification and antigen detection method for diagnosis of Salmonella enterica serovar typhi bacteremia. | Castonguay-Vanier J, Davong V, Bouthasavong L, Sengdetka D, Simmalavong M, Seupsavith A, Dance DA, Baker S, Le Thi Phuong T, Vongsouvath M, Newton PN. | J Clin Microbiol | 10.1128/jcm.02360-12 | 2013 | |
| Halogenated Analogs to Natural A-Type Proanthocyanidins: Evaluation of Their Antioxidant and Antimicrobial Properties and Possible Application in Food Industries. | Cobo A, Alejo-Armijo A, Cruz D, Altarejos J, Salido S, Ortega-Morente E. | Molecules | 10.3390/molecules29153622 | 2024 | ||
| Evaluation of Antibacterial and Antibiofilm Properties of Phenolics with Coumarin, Naphthoquinone and Pyranone Moieties Against Foodborne Microorganisms. | Alejo-Armijo A, Cobo A, Alejo-Armijo A, Altarejos J, Salido S, Ortega-Morente E. | Molecules | 10.3390/molecules30040944 | 2025 | ||
| Synthesis of Analogs to A-Type Proanthocyanidin Natural Products with Enhanced Antimicrobial Properties against Foodborne Microorganisms. | Cobo A, Alejo-Armijo A, Cruz D, Altarejos J, Salido S, Ortega-Morente E. | Molecules | 10.3390/molecules28124844 | 2023 | ||
| Applications of Essential Oils as Antibacterial Agents in Minimally Processed Fruits and Vegetables-A Review. | Santos MIS, Marques C, Mota J, Pedroso L, Lima A. | Microorganisms | 10.3390/microorganisms10040760 | 2022 | ||
| Inhibition of Salmonella enterica Cells in Deli-Type Salad by Enterocin AS-48 in Combination with Other Antimicrobials. | Cobo Molinos A, Lucas Lopez R, Abriouel H, Ben Omar N, Valdivia E, Galvez A | Probiotics Antimicrob Proteins | 10.1007/s12602-009-9005-z | 2009 | ||
| Pathogenicity | Enhanced bactericidal effect of enterocin AS-48 in combination with high-intensity pulsed-electric field treatment against Salmonella enterica in apple juice. | Martinez Viedma P, Sobrino Lopez A, Ben Omar N, Abriouel H, Lucas Lopez R, Valdivia E, Martin Belloso O, Galvez A | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2008.08.014 | 2008 |
| #5574 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14846 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #34999 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119050 | Collection of Institut Pasteur ; Curators of the CIP; CIP 55.133 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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