Name: Salmonella enterica subsp. enterica 1348
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5116

Type strain:

Species: Salmonella enterica subsp. enterica

Strain Designation: 1348

Culture col. no.: DSM 14846, ATCC 13312, CIP 55.133, CIP 58.57, NCTC 5735, JCM 1651, CECT 915, NBRC 105684, CCUG 49677

Strain history: CIP <- 1955, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis <- F. Kaufmann, Copenhagen, Denmark: strain 1348

NCBI tax ID(s): 59201 (subspecies)

SI-ID 35787

ATCC 13312, NCTC 5735, JCM 1651, CIP 55.133, CIP 58.57, CECT 915, CCRC 10743, DSM 14846, KCTC 2929, BCRC 10743, CCT 0524, CCUG 49677, KCTC 12455

Special Collections

Other strains from Salmonella enterica subsp. enterica

Section

When using BacDive for research please cite our paper

Salmonella enterica subsp. enterica 1348 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Salmonella*
	Species	**Salmonella enterica subsp. enterica**
	Full Scientific Name (LPSN)	Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

Synonym

Salmonella choleraesuis subsp. choleraesuis

Information on morphological and physiological properties Morphology

[Ref.: #119050]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %100

[Ref.: #119050]	Cell shape	rod-shaped

[Ref.: #119050]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5574]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #5574]

Culture medium composition

expand / minimize

[Ref.: #34999]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34999]

Culture medium growth

[Ref.: #34999]

Culture medium composition

expand / minimize

[Ref.: #119050]

Culture medium

CIP Medium 72

[Ref.: #119050]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119050]

Culture medium

CIP Medium 3

[Ref.: #119050]

Culture medium growth

[Ref.: #119050]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5574]		growth	30 °C
[Ref.: #34999]		growth	30 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #119050]		growth	10-41 °C
[Ref.: #119050]	no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119050]

Oxygen tolerance

facultative anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119050]	citrate ChEBI	+	carbon source
[Ref.: #119050]	malonate ChEBI	-	assimilation
[Ref.: #119050]	nitrate ChEBI	+	reduction
[Ref.: #119050]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119050]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #119050]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119050]		acetoin ChEBI	-
[Ref.: #119050]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119050]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119050]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119050]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119050]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119050]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #119050]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119050]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119050]	12821	-	+	+	+	-	+	+	-	+	-	+	+	+	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB626116 (>99% sequence identity) for Salmonella enterica from Microbeatlas

Aquatic Samples	2005
Soil Samples	1084
Animal Samples	23018
Plant Samples	1996
Total Samples	28103

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5574]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119050]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: JCM 1651	AB626116	1464	GenBank ENA	59201 tax ID
[Ref.: #124043]	Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: NBRC 105684.	AB682260	1467	GenBank ENA	59201 tax ID	*
[Ref.: #20218]	Salmonella choleraesuis strain DSM 14846 16S ribosomal RNA gene, partial sequence	EU014681	1413	GenBank ENA	28901 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salmonella enterica DSM 14846	GCA_003201315	scaffold	GenBank ENA	28901 tax ID
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Choleraesuis NCTC5735	GCA_900456705	contig	GenBank ENA	119912 tax ID	*
[Ref.: #66792]	Salmonella enterica strain DSM 14846	28901.4074	wgs	PATRIC	28901 tax ID	*
[Ref.: #66792]	Salmonella enterica strain FDAARGOS_879	28901.13771	complete	PATRIC	28901 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Choleraesuis strain NCTC5735	119912.46	wgs	PATRIC	119912 tax ID	*
[Ref.: #66792]	Salmonella choleraesuis DSM 14846	2756170275	draft	JGI IMG/M	28901 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica strain FDAARGOS_879 strain Not applicable PATRIC: 28901.13771
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.068	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.146	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.429	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	76.05	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	75.528	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salmonella enterica strain FDAARGOS_879 PATRIC: 28901.13771
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	88.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	85.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	71.7
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	75.7

Availability in culture collections External links

[Ref.: #5574]

Culture collection no.

DSM 14846, ATCC 13312, CIP 55.133, CIP 58.57, NCTC 5735, JCM 1651, CECT 915, NBRC 105684, CCUG 49677

[Ref.: #74609]

SI-ID 35787

Literature:

	Title	Authors	Journal	DOI	Year
Pathogenicity	Enhanced bactericidal effect of enterocin AS-48 in combination with high-intensity pulsed-electric field treatment against Salmonella enterica in apple juice.	Martinez Viedma P, Sobrino Lopez A, Ben Omar N, Abriouel H, Lucas Lopez R, Valdivia E, Martin Belloso O, Galvez A	Int J Food Microbiol	10.1016/j.ijfoodmicro.2008.08.014	2008	*
	Inhibition of Salmonella enterica Cells in Deli-Type Salad by Enterocin AS-48 in Combination with Other Antimicrobials.	Cobo Molinos A, Lucas Lopez R, Abriouel H, Ben Omar N, Valdivia E, Galvez A	Probiotics Antimicrob Proteins	10.1007/s12602-009-9005-z	2009	*

References

#5574

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14846

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34999 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#74609

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35787.1 )

#119050 Collection of Institut Pasteur ; Curators of the CIP; CIP 55.133

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Salmonella enterica strain FDAARGOS_879 strain Not applicable

Salmonella enterica strain FDAARGOS_879

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