Name: Salmonella enterica CIP 55.44
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 136676

Type strain:

Species: Salmonella enterica

Culture col. no.: CIP 55.44, NCTC 8392

Strain history: CIP <- 1955, A. Felix, PHLS, London, UK: strain 3040, Salmonella typhimurium

NCBI tax ID(s): 28901 (species)

Special Collections

Other strains from Salmonella enterica

Section

When using BacDive for research please cite our paper

Salmonella enterica CIP 55.44 is a mesophilic bacterium of the family Enterobacteriaceae.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Salmonella*
	Species	**Salmonella enterica**
	Full Scientific Name (LPSN)	Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

	Synonym	Salmonella typhi
	Synonym	Salmonella paratyphi
	Synonym	"Bacillus* typhi"*
	Synonym	"Bacillus* enteritidis"*
	Synonym	"Bacillus* choleraesuis"*
	Synonym	Salmonella choleraesuis
	Synonym	"Bacillus* typhimurium"*
	Synonym	Salmonella typhimurium
	Synonym	Salmonella enteritidis

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %94.7
[Ref.: #125438]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36157]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36157]

Culture medium growth

[Ref.: #36157]

Culture medium composition

expand / minimize

[Ref.: #36157]

Culture medium

CIP Medium 3

[Ref.: #36157]

Culture medium growth

[Ref.: #36157]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36157]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %92.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #36157]	Isolation date	1934
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36157]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salmonella enterica NCTC8392	GCA_900456125	contig	GenBank ENA	28901 tax ID	*
[Ref.: #66792]	Salmonella enterica strain NCTC8392	28901.4337	wgs	PATRIC	28901 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica strain NCTC8392 PATRIC: 28901.4337
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.507	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.032	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	75.255	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	76.028	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salmonella enterica NCTC8392 NCBI: GCA_900456125
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	86.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	74
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	94.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	92.1

Availability in culture collections External links

[Ref.: #36157]

Culture collection no.

CIP 55.44, NCTC 8392

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36157 Collection of Institut Pasteur ; Curators of the CIP; CIP 55.44

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salmonella enterica in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Salmonella enterica strain NCTC8392

Salmonella enterica NCTC8392

Change proposal

Change proposal