Strain identifier
BacDive ID: 136676
Type strain: 
Species: Salmonella enterica
Strain history: CIP <- 1955, A. Felix, PHLS, London, UK: strain 3040, Salmonella typhimurium
NCBI tax ID(s): 28901 (species)
version 9.1 (current version)
General
@ref: 36157
BacDive-ID: 136676
keywords: genome sequence, Bacteria, Gram-negative
description: Salmonella enterica CIP 55.44 is a Gram-negative bacterium that was isolated from Unknown source.
NCBI tax id
- NCBI tax id: 28901
- Matching level: species
strain history
| @ref | history |
|---|---|
| 36157 | 1955, A. Felix, PHLS, London, UK: strain 3040, Salmonella typhimurium |
| 36157 | CIP <- 1955, A. Felix, PHLS, London, UK: strain 3040, Salmonella typhimurium |
doi: 10.13145/bacdive136676.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica
- full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
@ref synonym 20215 Bacillus typhi 20215 Bacillus typhimurium 20215 Bacillus enteritidis 20215 Bacillus choleraesuis 20215 Salmonella typhi 20215 Salmonella choleraesuis 20215 Salmonella paratyphi 20215 Salmonella typhimurium 20215 Salmonella enteritidis
@ref: 36157
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 36157 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 36157 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 36157
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 36157
- sample type: Unknown source
- isolation date: 1934
Safety information
risk assessment
- @ref: 36157
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salmonella enterica NCTC8392 | GCA_900456125 | contig | ncbi | 28901 |
| 66792 | Salmonella enterica strain NCTC8392 | 28901.4337 | wgs | patric | 28901 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.507 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.032 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 75.255 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 76.028 | no |
External links
@ref: 36157
culture collection no.: CIP 55.44, NCTC 8392
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 36157 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.44 | Collection of Institut Pasteur (CIP 55.44) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |