Name: Salmonella enterica CCUG 7488
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141830

Type strain:

Species: Salmonella enterica

Culture col. no.: CCUG 7488, NCTC 779

NCBI tax ID(s): 28901 (species)

Special Collections

CCUG

Other strains from Salmonella enterica

When using BacDive for research please cite our paper

Salmonella enterica CCUG 7488 is a Gram-negative bacterium of the family Enterobacteriaceae.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Salmonella*
	Species	**Salmonella enterica**
	Full Scientific Name (LPSN)	Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

	Synonym	Salmonella typhi
	Synonym	Salmonella paratyphi
	Synonym	"Bacillus* typhi"*
	Synonym	"Bacillus* enteritidis"*
	Synonym	"Bacillus* choleraesuis"*
	Synonym	Salmonella choleraesuis
	Synonym	"Bacillus* typhimurium"*
	Synonym	Salmonella typhimurium
	Synonym	Salmonella enteritidis

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %92.2
[Ref.: #125438]	Gram stain	negative Confidence in %99.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Ability of spore formation

no Confidence in %94.1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Typhi NCTC779	GCA_900456785	contig	GenBank ENA	90370 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Typhi strain NCTC779	90370.2585	wgs	PATRIC	90370 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica subsp. enterica serovar Typhi strain NCTC779 PATRIC: 90370.2585
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	87.02	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	75.1	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.149	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.383	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	62.111	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salmonella enterica subsp. enterica serovar Typhi NCTC779 NCBI: GCA_900456785
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	67.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	92.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative aerobe	73

Availability in culture collections External links

[Ref.: #45007]

Culture collection no.

CCUG 7488, NCTC 779

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#45007 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7488

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Salmonella enterica subsp. enterica serovar Typhi strain NCTC779

Salmonella enterica subsp. enterica serovar Typhi NCTC779

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