Salmonella enterica LRA 026 08 75 is a Gram-negative, motile, rod-shaped bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Salmonella |
| Species Salmonella enterica |
| Full scientific name Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987 |
| Synonyms (9) |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 41691 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 41691 | CIP Medium 3 | Medium recipe at CIP | |||
| 41691 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 41691 | positive | growth | 30 |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | aerobe | 91.9 |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 41691 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM48725v2 assembly for Salmonella enterica subsp. enterica serovar Chester str. ATCC 11997 | complete | 941190 | 98.56 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 74.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 93.10 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 91.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.26 | no |
| 125438 | aerobic | aerobicⓘ | no | 74.68 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.53 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.39 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Flavorubredoxin, a Candidate Trigger Related to Thrombotic Thrombocytopenic Purpura: Screening of the Complete Genome of a Salmonella enterica Serovar Typhimurium Isolate From an AIDS Case. | Wang Z, Xu H, Gu B, Jin Y, Wang T, Ma J, Lu Y, Yu X, Zheng B, Zhang Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.864087 | 2022 | ||
| Genetics | Whole Genome Analysis Detects the Emergence of a Single Salmonella enterica Serovar Chester Clone in Japan's Kanto Region. | Ando N, Sekizuka T, Yokoyama E, Aihara Y, Konishi N, Matsumoto Y, Ishida K, Nagasawa K, Jourdan-Da Silva N, Suzuki M, Kimura H, Le Hello S, Murakami K, Kuroda M, Hirai S, Fukaya S. | Front Microbiol | 10.3389/fmicb.2021.705679 | 2021 | |
| Application of a High-Throughput Targeted Sequence AmpliSeq Procedure to Assess the Presence and Variants of Virulence Genes in Salmonella. | Gao R, Huang H, Hamel J, Levesque RC, Goodridge LD, Ogunremi D. | Microorganisms | 10.3390/microorganisms10020369 | 2022 | ||
| Enzymology | Multinational outbreak of travel-related Salmonella Chester infections in Europe, summers 2014 and 2015. | Fonteneau L, Jourdan Da Silva N, Fabre L, Ashton P, Torpdahl M, Muller L, Bouchrif B, El Boulani A, Valkanou E, Mattheus W, Friesema I, Herrera Leon S, Varela Martinez C, Mossong J, Severi E, Grant K, Weill FX, Gossner CM, Bertrand S, Dallman T, Le Hello S. | Euro Surveill | 10.2807/1560-7917.es.2017.22.7.30463 | 2017 | |
| Phylogeny | Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. | Timme RE, Pettengill JB, Allard MW, Strain E, Barrangou R, Wehnes C, Van Kessel JS, Karns JS, Musser SM, Brown EW. | Genome Biol Evol | 10.1093/gbe/evt159 | 2013 | |
| PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp. | Cohen HJ, Mechanda SM, Lin W. | Appl Environ Microbiol | 10.1128/aem.62.12.4303-4308.1996 | 1996 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #41691 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103543 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive139467.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data