Name: Salmonella enterica CIP 104220
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139672

Type strain:

Species: Salmonella enterica

Culture col. no.: CIP 104220, ATCC 10708, ETS 34

Strain history: CIP <- 1994, ATCC <- AMC: strain ETS 34

NCBI tax ID(s): 28901 (species)

Special Collections

Other strains from Salmonella enterica

Section

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Salmonella enterica CIP 104220 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

Gram-negative
facultative anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Salmonella*
	Species	**Salmonella enterica**
	Full Scientific Name (LPSN)	Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

	Synonym	Salmonella typhi
	Synonym	Salmonella paratyphi
	Synonym	"Bacillus* typhi"*
	Synonym	"Bacillus* enteritidis"*
	Synonym	"Bacillus* choleraesuis"*
	Synonym	Salmonella choleraesuis
	Synonym	"Bacillus* typhimurium"*
	Synonym	Salmonella typhimurium
	Synonym	Salmonella enteritidis

Information on morphological and physiological properties Morphology

[Ref.: #42276]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %100

[Ref.: #42276]	Cell shape	rod-shaped

[Ref.: #42276]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MEDIUM 72- for trypto casein soja agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 72

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 3

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #42276]		growth	30 °C
[Ref.: #42276]		growth	30-41 °C
[Ref.: #42276]	no	growth	5 °C
[Ref.: #42276]	no	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #42276]

Oxygen tolerance

facultative anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #42276]	glucose ChEBI	+	fermentation
[Ref.: #42276]	glucose ChEBI	+	degradation
[Ref.: #42276]	lactose ChEBI	-	fermentation
[Ref.: #42276]	nitrate ChEBI	+	reduction
[Ref.: #42276]	nitrite ChEBI	-	reduction
[Ref.: #42276]	sodium thiosulfate ChEBI	-	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #42276]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #42276]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #42276]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #42276]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #42276]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #42276]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #42276]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #42276]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #42276]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #42276]	tryptophan deaminase	-
[Ref.: #42276]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #42276]	605	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	-	-	-	+	-	-	-	-	+	-	+	-	+	+	-	-	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	+	+	+	-	+	-	+	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #42276]	7846	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42276]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708	GCA_000487295	complete	GenBank ENA	938142 tax ID	*
[Ref.: #66792]	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708	938142.3	wgs	PATRIC	938142 tax ID	*
[Ref.: #66792]	Salmonella enterica enterica sv. Choleraesuis ATCC 10708	2568526425	complete	JGI IMG/M	938142 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 ATCC 10708 NCBI: GCA_000487295.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.068	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	76.173	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.146	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	76.028	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 NCBI: GCA_000487295
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	84.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	70.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	89
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	82.8

Availability in culture collections External links

[Ref.: #42276]

Culture collection no.

CIP 104220, ATCC 10708, ETS 34

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Phylogeny	Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.	Lone A, Mottawea W, Ait Chait Y, Hammami R	Microorganisms	10.3390/microorganisms9010166	2021	*
Pathogenicity	Down-top nanofabrication of binary (CdO)x (ZnO)1-x nanoparticles and their antibacterial activity.	Al-Hada NM, Mohamed Kamari H, Abdullah CAC, Saion E, Shaari AH, Talib ZA, Matori KA	Int J Nanomedicine	10.2147/IJN.S150405	2017	*
Phylogeny	Evaluation of the antibacterial activity of the methylene chloride extract of Miconia ligustroides, isolated triterpene acids, and ursolic acid derivatives.	Cunha WR, de Matos GX, Souza MG, Tozatti MG, Andrade e Silva ML, Martins CH, da Silva R, Da Silva Filho AA	Pharm Biol	10.3109/13880200903062648	2010	*
Pathogenicity	Antimicrobial activity and chemical investigation of Brazilian Drosera.	Ferreira DT, Andrei CC, Saridakis HO, Faria Tde J, Vinhato E, Carvalho KE, Daniel JF, Machado SL, Saridakis DP, Braz-Filho R	Mem Inst Oswaldo Cruz	10.1590/s0074-02762004000700016	2005	*
Pathogenicity	Evaluation of disinfectants against Salmonella enteritidis.	Davison S, Benson CE, Eckroade RJ	Avian Dis		1996	*
Pathogenicity	[Microbiological evaluation of chemical disinfectants for household use].	Timenetsky J	Rev Saude Publica	10.1590/s0034-89101990000100008	1990	*
Pathogenicity	[Phenolic coefficient in the microbiological evaluation of disinfectants for hospital and household use].	Timenetsky J, Alterthum F	Rev Saude Publica	10.1590/s0034-89101989000200011	1989	*
Pathogenicity	Ineffectiveness of hospital disinfectants against bacteria: a collaborative study.	Rutala WA, Cole EC	Infect Control	10.1017/s0195941700067564	1987	*
Cultivation	Standardization of bacterial numbers of penicylinders used in disinfectant testing: interlaboratory study.	Cole EC, Rutala WA, Samsa GP	J Assoc Off Anal Chem		1987	*
	Adaptation and validation of a method for evaluating the bactericidal activity of ethyl alcohol in gel format 70% (w/w).	Cruz AFD, Abreu AO, Souza PA, Deveza B, Medeiros CT, Sousa VS, Sabagh BP, Villas Boas MHS	J Microbiol Methods	10.1016/j.mimet.2021.106402	2021	*
	Complete Genome and Methylome Sequences of Two Salmonella enterica spp.	Yao K, Muruvanda T, Roberts RJ, Payne J, Allard MW, Hoffmann M	Genome Announc	10.1128/genomeA.01599-15	2016	*
	Atmospheric Cold Plasma Inactivation of Salmonella and Escherichia coli on the Surface of Golden Delicious Apples.	Kilonzo-Nthenge A, Liu S, Yannam S, Patras A	Front Nutr	10.3389/fnut.2018.00120	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42276 Collection of Institut Pasteur ; Curators of the CIP; CIP 104220

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 ATCC 10708

Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708

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