Strain identifier

BacDive ID: 139672

Type strain: No

Species: Salmonella enterica

Strain history: CIP <- 1994, ATCC <- AMC: strain ETS 34

NCBI tax ID(s): 28901 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 42276

BacDive-ID: 139672

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Salmonella enterica CIP 104220 is a facultative anaerobe, mesophilic, motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 28901
  • Matching level: species

strain history

  • @ref: 42276
  • history: CIP <- 1994, ATCC <- AMC: strain ETS 34

doi: 10.13145/bacdive139672.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica
  • full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
  • synonyms

    @refsynonym
    20215Bacillus typhi
    20215Bacillus typhimurium
    20215Bacillus enteritidis
    20215Bacillus choleraesuis
    20215Salmonella typhi
    20215Salmonella choleraesuis
    20215Salmonella paratyphi
    20215Salmonella typhimurium
    20215Salmonella enteritidis

@ref: 42276

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.976
6948099.992negative
42276yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42276MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
42276CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
42276CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
42276positivegrowth30mesophilic
42276positivegrowth30-41
42276nogrowth5psychrophilic
42276nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 42276
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.714

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4227617234glucose+fermentation
4227617716lactose-fermentation
4227617632nitrate+reduction
4227616301nitrite-reduction
42276132112sodium thiosulfate-builds gas from
4227617234glucose+degradation

antibiotic resistance

  • @ref: 42276
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 42276
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 42276
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
42276oxidase-
42276beta-galactosidase-3.2.1.23
42276alcohol dehydrogenase-1.1.1.1
42276catalase+1.11.1.6
42276lysine decarboxylase+4.1.1.18
42276ornithine decarboxylase+4.1.1.17
42276tryptophan deaminase-
42276urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42276-+++-++-+-++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
42276+++++-+--++---+----+-+-++------+-+--+------+++-+-++--++----++----+---------+---++-+------+++--+----

Safety information

risk assessment

  • @ref: 42276
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708GCA_000487295completencbi938142
66792Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708938142.3wgspatric938142
66792Salmonella enterica enterica sv. Choleraesuis ATCC 107082568526425completeimg938142

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.157no
motileyes91.157no
motileyes91.157no
flagellatedno50.946no
flagellatedno50.946no
flagellatedno50.946no
gram-positiveno98.65no
gram-positiveno98.65no
gram-positiveno98.65no
anaerobicno91.079no
anaerobicno91.079no
anaerobicno91.079no
aerobicyes68.828no
aerobicyes68.828no
aerobicyes68.828no
halophileno93.109no
halophileno93.109no
halophileno93.109no
spore-formingno93.624no
spore-formingno93.624no
spore-formingno93.624no
thermophileno98.774no
thermophileno98.774no
thermophileno98.774no
glucose-utilyes93.031no
glucose-utilyes93.031no
glucose-utilyes93.031no
glucose-fermentyes93.523no
glucose-fermentyes93.523no
glucose-fermentyes93.523no

External links

@ref: 42276

culture collection no.: CIP 104220, ATCC 10708, ETS 34

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity2120768[Microbiological evaluation of chemical disinfectants for household use].Timenetsky JRev Saude Publica10.1590/s0034-891019900001000081990Disinfectants/*pharmacology, Disinfection, Evaluation Studies as Topic, *Household Products, Pseudomonas aeruginosa/*drug effects, Salmonella/*drug effects, Staphylococcus aureus/*drug effects
Pathogenicity2515584[Phenolic coefficient in the microbiological evaluation of disinfectants for hospital and household use].Timenetsky J, Alterthum FRev Saude Publica10.1590/s0034-891019890002000111989Disinfectants/*analysis/pharmacology, Phenols/*analysis, Pseudomonas aeruginosa/drug effects, Salmonella/drug effects, Staphylococcus aureus/drug effects
Pathogenicity3123412Ineffectiveness of hospital disinfectants against bacteria: a collaborative study.Rutala WA, Cole ECInfect Control10.1017/s01959417000675641987Disinfectants/*pharmacology, Hospitals, Microbial Sensitivity Tests, Pseudomonas aeruginosa/*drug effects, Salmonella/*drug effects, Staphylococcus aureus/*drug effects
Cultivation3305474Standardization of bacterial numbers of penicylinders used in disinfectant testing: interlaboratory study.Cole EC, Rutala WA, Samsa GPJ Assoc Off Anal Chem1987Bacteria/*drug effects, Bacteriological Techniques/*instrumentation, Culture Media, Disinfectants/*pharmacology/standardsPathogenicity
Pathogenicity8790874Evaluation of disinfectants against Salmonella enteritidis.Davison S, Benson CE, Eckroade RJAvian Dis1996Chlorine/pharmacology, Disinfectants/*pharmacology, Drug Interactions, Glutaral/pharmacology, Phenol, Phenols/pharmacology, Quaternary Ammonium Compounds/pharmacology, Salmonella/drug effects, Salmonella enteritidis/*drug effects/growth & development
Pathogenicity15654434Antimicrobial activity and chemical investigation of Brazilian Drosera.Ferreira DT, Andrei CC, Saridakis HO, Faria Tde J, Vinhato E, Carvalho KE, Daniel JF, Machado SL, Saridakis DP, Braz-Filho RMem Inst Oswaldo Cruz10.1590/s0074-027620040007000162005Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Candida albicans/drug effects, Drosera/*chemistry, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Microbial Sensitivity Tests, Plant Extracts/chemistry/pharmacologyEnzymology
Phylogeny20645834Evaluation of the antibacterial activity of the methylene chloride extract of Miconia ligustroides, isolated triterpene acids, and ursolic acid derivatives.Cunha WR, de Matos GX, Souza MG, Tozatti MG, Andrade e Silva ML, Martins CH, da Silva R, Da Silva Filho AAPharm Biol10.3109/138802009030626482010Anti-Bacterial Agents/analysis/chemistry/isolation & purification/*pharmacology, Brazil, Drug Discovery, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/*drug effects, Magnetic Resonance Spectroscopy, Medicine, Traditional, Melastomataceae/*chemistry, Methylene Chloride/chemistry, Microbial Sensitivity Tests, Molecular Structure, Oleanolic Acid/analogs & derivatives/analysis/chemistry/*pharmacology, Phytotherapy, Plant Components, Aerial/chemistry, Plant Extracts/chemistry/*pharmacology, Spectrometry, Mass, Electrospray Ionization, Triterpenes/analysis/chemistry/isolation & purification/*pharmacologyEnzymology
26798102Complete Genome and Methylome Sequences of Two Salmonella enterica spp.Yao K, Muruvanda T, Roberts RJ, Payne J, Allard MW, Hoffmann MGenome Announc10.1128/genomeA.01599-152016
Pathogenicity29200844Down-top nanofabrication of binary (CdO)x (ZnO)1-x nanoparticles and their antibacterial activity.Al-Hada NM, Mohamed Kamari H, Abdullah CAC, Saion E, Shaari AH, Talib ZA, Matori KAInt J Nanomedicine10.2147/IJN.S1504052017Anti-Bacterial Agents/chemistry/*pharmacology, Bacillus subtilis/drug effects, Cadmium Compounds/*chemistry/pharmacology, Drug Evaluation, Preclinical/methods, Escherichia coli/drug effects, Microbial Sensitivity Tests, Microscopy, Electron, Scanning, Microscopy, Electron, Transmission, Nanoparticles/*chemistry, Oxides/*chemistry/pharmacology, Particle Size, Photoelectron Spectroscopy, Salmonella/drug effects, Spectroscopy, Fourier Transform Infrared, X-Ray Diffraction, Zinc Oxide/*chemistry/pharmacology
30619867Atmospheric Cold Plasma Inactivation of Salmonella and Escherichia coli on the Surface of Golden Delicious Apples.Kilonzo-Nthenge A, Liu S, Yannam S, Patras AFront Nutr10.3389/fnut.2018.001202018
Phylogeny33451155Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.Lone A, Mottawea W, Ait Chait Y, Hammami RMicroorganisms10.3390/microorganisms90101662021
34973997Adaptation and validation of a method for evaluating the bactericidal activity of ethyl alcohol in gel format 70% (w/w).Cruz AFD, Abreu AO, Souza PA, Deveza B, Medeiros CT, Sousa VS, Sabagh BP, Villas Boas MHSJ Microbiol Methods10.1016/j.mimet.2021.1064022021Anti-Bacterial Agents/pharmacology, *Disinfectants/pharmacology, *Ethanol/pharmacology, Pseudomonas aeruginosa, Staphylococcus aureus

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42276Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104220Collection of Institut Pasteur (CIP 104220)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1