Strain identifier
BacDive ID: 139672
Type strain:
Species: Salmonella enterica
Strain history: CIP <- 1994, ATCC <- AMC: strain ETS 34
NCBI tax ID(s): 28901 (species)
version 8.1 (current version)
General
@ref: 42276
BacDive-ID: 139672
keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile
description: Salmonella enterica CIP 104220 is a facultative anaerobe, mesophilic, motile bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 28901
- Matching level: species
strain history
- @ref: 42276
- history: CIP <- 1994, ATCC <- AMC: strain ETS 34
doi: 10.13145/bacdive139672.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica
- full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
@ref synonym 20215 Bacillus typhi 20215 Bacillus typhimurium 20215 Bacillus enteritidis 20215 Bacillus choleraesuis 20215 Salmonella typhi 20215 Salmonella choleraesuis 20215 Salmonella paratyphi 20215 Salmonella typhimurium 20215 Salmonella enteritidis
@ref: 42276
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 94.976 | ||
69480 | 99.992 | negative | ||
42276 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
42276 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
42276 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
42276 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
42276 | positive | growth | 30 | mesophilic |
42276 | positive | growth | 30-41 | |
42276 | no | growth | 5 | psychrophilic |
42276 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 42276
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.714 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
42276 | 17234 | glucose | + | fermentation |
42276 | 17716 | lactose | - | fermentation |
42276 | 17632 | nitrate | + | reduction |
42276 | 16301 | nitrite | - | reduction |
42276 | 132112 | sodium thiosulfate | - | builds gas from |
42276 | 17234 | glucose | + | degradation |
antibiotic resistance
- @ref: 42276
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 42276
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 42276
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
42276 | oxidase | - | |
42276 | beta-galactosidase | - | 3.2.1.23 |
42276 | alcohol dehydrogenase | - | 1.1.1.1 |
42276 | catalase | + | 1.11.1.6 |
42276 | lysine decarboxylase | + | 4.1.1.18 |
42276 | ornithine decarboxylase | + | 4.1.1.17 |
42276 | tryptophan deaminase | - | |
42276 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
42276 | - | + | + | + | - | + | + | - | + | - | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
42276 | + | + | + | + | + | - | + | - | - | + | + | - | - | - | + | - | - | - | - | + | - | + | - | + | + | - | - | - | - | - | - | + | - | + | - | - | + | - | - | - | - | - | - | + | + | + | - | + | - | + | + | - | - | + | + | - | - | - | - | + | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | + | - | - | - | - | - | - | + | + | + | - | - | + | - | - | - | - |
Safety information
risk assessment
- @ref: 42276
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 | GCA_000487295 | complete | ncbi | 938142 |
66792 | Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 | 938142.3 | wgs | patric | 938142 |
66792 | Salmonella enterica enterica sv. Choleraesuis ATCC 10708 | 2568526425 | complete | img | 938142 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 91.157 | no |
motile | yes | 91.157 | no |
motile | yes | 91.157 | no |
flagellated | no | 50.946 | no |
flagellated | no | 50.946 | no |
flagellated | no | 50.946 | no |
gram-positive | no | 98.65 | no |
gram-positive | no | 98.65 | no |
gram-positive | no | 98.65 | no |
anaerobic | no | 91.079 | no |
anaerobic | no | 91.079 | no |
anaerobic | no | 91.079 | no |
aerobic | yes | 68.828 | no |
aerobic | yes | 68.828 | no |
aerobic | yes | 68.828 | no |
halophile | no | 93.109 | no |
halophile | no | 93.109 | no |
halophile | no | 93.109 | no |
spore-forming | no | 93.624 | no |
spore-forming | no | 93.624 | no |
spore-forming | no | 93.624 | no |
thermophile | no | 98.774 | no |
thermophile | no | 98.774 | no |
thermophile | no | 98.774 | no |
glucose-util | yes | 93.031 | no |
glucose-util | yes | 93.031 | no |
glucose-util | yes | 93.031 | no |
glucose-ferment | yes | 93.523 | no |
glucose-ferment | yes | 93.523 | no |
glucose-ferment | yes | 93.523 | no |
External links
@ref: 42276
culture collection no.: CIP 104220, ATCC 10708, ETS 34
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 2120768 | [Microbiological evaluation of chemical disinfectants for household use]. | Timenetsky J | Rev Saude Publica | 10.1590/s0034-89101990000100008 | 1990 | Disinfectants/*pharmacology, Disinfection, Evaluation Studies as Topic, *Household Products, Pseudomonas aeruginosa/*drug effects, Salmonella/*drug effects, Staphylococcus aureus/*drug effects | |
Pathogenicity | 2515584 | [Phenolic coefficient in the microbiological evaluation of disinfectants for hospital and household use]. | Timenetsky J, Alterthum F | Rev Saude Publica | 10.1590/s0034-89101989000200011 | 1989 | Disinfectants/*analysis/pharmacology, Phenols/*analysis, Pseudomonas aeruginosa/drug effects, Salmonella/drug effects, Staphylococcus aureus/drug effects | |
Pathogenicity | 3123412 | Ineffectiveness of hospital disinfectants against bacteria: a collaborative study. | Rutala WA, Cole EC | Infect Control | 10.1017/s0195941700067564 | 1987 | Disinfectants/*pharmacology, Hospitals, Microbial Sensitivity Tests, Pseudomonas aeruginosa/*drug effects, Salmonella/*drug effects, Staphylococcus aureus/*drug effects | |
Cultivation | 3305474 | Standardization of bacterial numbers of penicylinders used in disinfectant testing: interlaboratory study. | Cole EC, Rutala WA, Samsa GP | J Assoc Off Anal Chem | 1987 | Bacteria/*drug effects, Bacteriological Techniques/*instrumentation, Culture Media, Disinfectants/*pharmacology/standards | Pathogenicity | |
Pathogenicity | 8790874 | Evaluation of disinfectants against Salmonella enteritidis. | Davison S, Benson CE, Eckroade RJ | Avian Dis | 1996 | Chlorine/pharmacology, Disinfectants/*pharmacology, Drug Interactions, Glutaral/pharmacology, Phenol, Phenols/pharmacology, Quaternary Ammonium Compounds/pharmacology, Salmonella/drug effects, Salmonella enteritidis/*drug effects/growth & development | ||
Pathogenicity | 15654434 | Antimicrobial activity and chemical investigation of Brazilian Drosera. | Ferreira DT, Andrei CC, Saridakis HO, Faria Tde J, Vinhato E, Carvalho KE, Daniel JF, Machado SL, Saridakis DP, Braz-Filho R | Mem Inst Oswaldo Cruz | 10.1590/s0074-02762004000700016 | 2005 | Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Candida albicans/drug effects, Drosera/*chemistry, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Microbial Sensitivity Tests, Plant Extracts/chemistry/pharmacology | Enzymology |
Phylogeny | 20645834 | Evaluation of the antibacterial activity of the methylene chloride extract of Miconia ligustroides, isolated triterpene acids, and ursolic acid derivatives. | Cunha WR, de Matos GX, Souza MG, Tozatti MG, Andrade e Silva ML, Martins CH, da Silva R, Da Silva Filho AA | Pharm Biol | 10.3109/13880200903062648 | 2010 | Anti-Bacterial Agents/analysis/chemistry/isolation & purification/*pharmacology, Brazil, Drug Discovery, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/*drug effects, Magnetic Resonance Spectroscopy, Medicine, Traditional, Melastomataceae/*chemistry, Methylene Chloride/chemistry, Microbial Sensitivity Tests, Molecular Structure, Oleanolic Acid/analogs & derivatives/analysis/chemistry/*pharmacology, Phytotherapy, Plant Components, Aerial/chemistry, Plant Extracts/chemistry/*pharmacology, Spectrometry, Mass, Electrospray Ionization, Triterpenes/analysis/chemistry/isolation & purification/*pharmacology | Enzymology |
26798102 | Complete Genome and Methylome Sequences of Two Salmonella enterica spp. | Yao K, Muruvanda T, Roberts RJ, Payne J, Allard MW, Hoffmann M | Genome Announc | 10.1128/genomeA.01599-15 | 2016 | |||
Pathogenicity | 29200844 | Down-top nanofabrication of binary (CdO)x (ZnO)1-x nanoparticles and their antibacterial activity. | Al-Hada NM, Mohamed Kamari H, Abdullah CAC, Saion E, Shaari AH, Talib ZA, Matori KA | Int J Nanomedicine | 10.2147/IJN.S150405 | 2017 | Anti-Bacterial Agents/chemistry/*pharmacology, Bacillus subtilis/drug effects, Cadmium Compounds/*chemistry/pharmacology, Drug Evaluation, Preclinical/methods, Escherichia coli/drug effects, Microbial Sensitivity Tests, Microscopy, Electron, Scanning, Microscopy, Electron, Transmission, Nanoparticles/*chemistry, Oxides/*chemistry/pharmacology, Particle Size, Photoelectron Spectroscopy, Salmonella/drug effects, Spectroscopy, Fourier Transform Infrared, X-Ray Diffraction, Zinc Oxide/*chemistry/pharmacology | |
30619867 | Atmospheric Cold Plasma Inactivation of Salmonella and Escherichia coli on the Surface of Golden Delicious Apples. | Kilonzo-Nthenge A, Liu S, Yannam S, Patras A | Front Nutr | 10.3389/fnut.2018.00120 | 2018 | |||
Phylogeny | 33451155 | Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa. | Lone A, Mottawea W, Ait Chait Y, Hammami R | Microorganisms | 10.3390/microorganisms9010166 | 2021 | ||
34973997 | Adaptation and validation of a method for evaluating the bactericidal activity of ethyl alcohol in gel format 70% (w/w). | Cruz AFD, Abreu AO, Souza PA, Deveza B, Medeiros CT, Sousa VS, Sabagh BP, Villas Boas MHS | J Microbiol Methods | 10.1016/j.mimet.2021.106402 | 2021 | Anti-Bacterial Agents/pharmacology, *Disinfectants/pharmacology, *Ethanol/pharmacology, Pseudomonas aeruginosa, Staphylococcus aureus |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
42276 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104220 | Collection of Institut Pasteur (CIP 104220) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |