Strain identifier

BacDive ID: 5116

Type strain: No

Species: Salmonella enterica

Strain Designation: 1348

Strain history: CIP <- 1955, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis <- F. Kaufmann, Copenhagen, Denmark: strain 1348

NCBI tax ID(s): 59201 (subspecies)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 5574

BacDive-ID: 5116

DSM-Number: 14846

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Salmonella enterica 1348 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

@refhistory
5574<- CIP <- L. Le Minor <- F. Kaufmann; 1348
67770R. Sakazaki 49 <-- ATCC 13312 <-- NCTC 5735 <-- F. Kauffmann 1348, K.34.
119050CIP <- 1955, L. Le Minor, Inst. Pasteur, Paris, France, Salmonella choleraesuis <- F. Kaufmann, Copenhagen, Denmark: strain 1348

doi: 10.13145/bacdive5116.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica
  • full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    @refsynonym
    20215Bacillus typhi
    20215Bacillus typhimurium
    20215Bacillus enteritidis
    20215Bacillus choleraesuis
    20215Salmonella typhi
    20215Salmonella choleraesuis
    20215Salmonella paratyphi
    20215Salmonella typhimurium
    20215Salmonella enteritidis

@ref: 5574

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: 1348

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.875
6948099.99negative
119050yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5574CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
34999MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119050CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119050CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
5574positivegrowth30mesophilic
34999positivegrowth30mesophilic
67770positivegrowth37mesophilic
119050positivegrowth10-41
119050nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119050
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.792

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11905016947citrate+carbon source
11905017632nitrate+reduction
11905016301nitrite-reduction
11905015792malonate-assimilation

antibiotic resistance

  • @ref: 119050
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 119050
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11905015688acetoin-
11905017234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119050oxidase-
119050beta-galactosidase-3.2.1.23
119050alcohol dehydrogenase-1.1.1.1
119050catalase+1.11.1.6
119050lysine decarboxylase+4.1.1.18
119050ornithine decarboxylase+4.1.1.17
119050urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119050-+++-++-+-+++---+---

Isolation, sampling and environmental information

isolation

  • @ref: 119050
  • sample type: Unknown source

taxonmaps

  • @ref: 69479
  • File name: preview.99_9.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_8;99_9&stattab=map
  • Last taxonomy: Salmonella enterica
  • 16S sequence: AB626116
  • Sequence Identity:
  • Total samples: 28103
  • soil counts: 1084
  • aquatic counts: 2005
  • animal counts: 23018
  • plant counts: 1996

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
55742Risk group (German classification)
1190502Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Salmonella choleraesuis strain DSM 14846 16S ribosomal RNA gene, partial sequenceEU0146811413ena28901
67770Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: JCM 1651AB6261161464ena59201

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Choleraesuis NCTC5735GCA_900456705contigncbi119912
66792Salmonella enterica strain DSM 1484628901.4074wgspatric28901
66792Salmonella enterica strain FDAARGOS_87928901.13771completepatric28901
66792Salmonella enterica subsp. enterica serovar Choleraesuis strain NCTC5735119912.46wgspatric119912
66792Salmonella choleraesuis DSM 148462756170275draftimg28901
67770Salmonella enterica DSM 14846GCA_003201315scaffoldncbi28901

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.715no
anaerobicno91.86no
halophileno93.516no
spore-formingno93.965no
glucose-utilyes92.522no
motileyes90.897no
aerobicyes68.216no
thermophileno98.527yes
flagellatedno51.833no
glucose-fermentyes93.193no

External links

@ref: 5574

culture collection no.: DSM 14846, ATCC 13312, CIP 55.133, CIP 58.57, NCTC 5735, JCM 1651, CECT 915, NBRC 105684, CCUG 49677

straininfo link

  • @ref: 74609
  • straininfo: 35787

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity18829125Enhanced bactericidal effect of enterocin AS-48 in combination with high-intensity pulsed-electric field treatment against Salmonella enterica in apple juice.Martinez Viedma P, Sobrino Lopez A, Ben Omar N, Abriouel H, Lucas Lopez R, Valdivia E, Martin Belloso O, Galvez AInt J Food Microbiol10.1016/j.ijfoodmicro.2008.08.0142008Anti-Bacterial Agents/pharmacology, Bacteriocins/*pharmacology, Beverages/*microbiology, Colony Count, Microbial, Consumer Product Safety, Drug Synergism, *Electromagnetic Fields, Food Contamination/analysis/prevention & control, Food Microbiology, Food Preservation/*methods, Humans, Malus/microbiology, Salmonella enterica/drug effects/*growth & developmentBiotechnology
26783134Inhibition of Salmonella enterica Cells in Deli-Type Salad by Enterocin AS-48 in Combination with Other Antimicrobials.Cobo Molinos A, Lucas Lopez R, Abriouel H, Ben Omar N, Valdivia E, Galvez AProbiotics Antimicrob Proteins10.1007/s12602-009-9005-z2009

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5574Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14846)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14846
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34999Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8799
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74609Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35787.1StrainInfo: A central database for resolving microbial strain identifiers
119050Curators of the CIPCollection of Institut Pasteur (CIP 55.133)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.133