Salmonella enterica subsp. enterica (DSM 17058, ATCC 43971, CIP 60.62)

Name: Salmonella enterica subsp. enterica (DSM 17058, ATCC 43971, CIP 60.62)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5117

Type strain

Strain Designation LT2

Culture col. no. DSM 17058 ATCC 43971 CIP 60.62 NCIMB 11450 NCTC 12416 4 more

NCBI tax ID(s) 28901 59201

Special Collections DSMZ CCUG JCM CIP Literature strains

Links

Salmonella enterica subsp. enterica LT2 is an aerobe, mesophilic prokaryote of the family Enterobacteriaceae.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 46974

LMG 7233,ATCC 43971,NCIMB 11450,DSM 18522,ATCC 700720,NCIB 11450,NCTC12416,IFO 13245,CECT 722,CCUG 42060,DSM 17058,NBRC 13245,KCTC 12456,CIP 60.62

@ref 20215

Last LPSN update 2025-12-16 09:47:59

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Salmonella

Species Salmonella enterica subsp. enterica

Full scientific name Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

Synonyms (1)

Salmonella choleraesuis subsp. choleraesuis

BacDive ID	Other strains from **Salmonella enterica subsp. enterica** (54)	Type strain
5103	S. enterica subsp. enterica LT2 hisG46, DSM 554
5104	S. enterica subsp. enterica K 103, DSM 4224, CIP 80.39, NCTC 6017, WDCM ...
5105	S. enterica subsp. enterica DSM 4883, ATCC 9184
5106	S. enterica subsp. enterica F98, DSM 26529, CECT 4156, CIP 110278, NCTC ...
5107	S. enterica subsp. enterica Mutton, DSM 5569, ATCC 13311, CCM 7933, NCTC ...
5108	S. enterica subsp. enterica Hochberg 2460, DSM 9145, ATCC 7378
5109	S. enterica subsp. enterica pSK1002, TA 1535/pSK 1002, DSM 9274
5110	S. enterica subsp. enterica 16, DSM 9379, ATCC 8326
5111	S. enterica subsp. enterica 775/W, Col Sal 385/57, 493, W 775, 775W, ...
5113	S. enterica subsp. enterica Zoosaloral H, DSM 11320
5114	S. enterica subsp. enterica DSM 13674, RKI 00-07121
5115	S. enterica subsp. enterica DSM 14221, RKI 01-02637
5116	S. enterica subsp. enterica 1348, DSM 14846, ATCC 13312, CIP 55.133, ...
5118	S. enterica subsp. enterica K-1891, DSM 17420, ATCC 13076, DSM 9898, ...
5120	S. enterica subsp. enterica DSM 19587, ATCC 14028, CDC 6516-60, CIP 104115, ...
5121	S. enterica subsp. enterica SL1344, DSM 24522
5122	S. enterica subsp. enterica Menendez 245, DSM 26655, ATCC 49214, CECT ...
23943	S. enterica subsp. enterica 110 (K 108), CNCT SK 108, GISK 100331, 110, ...
23944	S. enterica subsp. enterica Vi4, DSM 50912, ICPB 3247
23945	S. enterica subsp. enterica GISK 100354, StBL 4519, DSM 27686, CECT 4154, ...
131928	S. enterica subsp. enterica S15, DSM 101475
131929	S. enterica subsp. enterica S23, DSM 101476
131930	S. enterica subsp. enterica DSM 102345, NCCP 12232
131931	S. enterica subsp. enterica DSM 102851, NCCP 12241
131932	S. enterica subsp. enterica DSM 102864, NCCP 12231
157848	S. enterica subsp. enterica strain 6, DSM 107291
157849	S. enterica subsp. enterica strain 45, DSM 107292
157850	S. enterica subsp. enterica strain 104, DSM 107293
157851	S. enterica subsp. enterica strain 117, DSM 107294
157852	S. enterica subsp. enterica strain 191, DSM 107295
157853	S. enterica subsp. enterica strain 232, DSM 107296
157854	S. enterica subsp. enterica strain 240, DSM 107297
157855	S. enterica subsp. enterica strain 241, DSM 107298
157856	S. enterica subsp. enterica strain 256, DSM 107299
157857	S. enterica subsp. enterica strain 261, DSM 107300
157858	S. enterica subsp. enterica strain 310, DSM 107301
157859	S. enterica subsp. enterica strain 311, DSM 107302
157860	S. enterica subsp. enterica strain 375, DSM 107303
157861	S. enterica subsp. enterica strain 386, DSM 107304
157862	S. enterica subsp. enterica strain 399, DSM 107305
157863	S. enterica subsp. enterica strain 407, DSM 107306
157864	S. enterica subsp. enterica strain 422, DSM 107307
157865	S. enterica subsp. enterica strain 641, DSM 107308
157866	S. enterica subsp. enterica strain 765, DSM 107309
157867	S. enterica subsp. enterica strain 1150, DSM 107310
157868	S. enterica subsp. enterica strain 164, DSM 107311
157869	S. enterica subsp. enterica strain 259, DSM 107312
164871	S. enterica subsp. enterica JCM 3919
165439	S. enterica subsp. enterica JCM 6977, IFO 14193, NBRC 14193
165440	S. enterica subsp. enterica JCM 6978, IFO 14194, NBRC 14194
165441	S. enterica subsp. enterica JCM 6979, IFO 14209, NBRC 14209
165442	S. enterica subsp. enterica JCM 6980, IFO 14210, NBRC 14210
165443	S. enterica subsp. enterica JCM 6981, IFO 14211, NBRC 14211
165444	S. enterica subsp. enterica JCM 6982, IFO 14212, NBRC 14212

Morphology

Cell morphology

@ref	Cell length	Cell width
22945	2 µm	0.5-1.5 µm
119044
125439
125438

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6727	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6727	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33584	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119044	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6727	positive	growth	37	mesophilic
33584	positive	growth	30	mesophilic
55324	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic
119044	positive	growth	30-41
119044	negative	growth	5
119044	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
55324	aerobe
119044	facultative anaerobe

Compound production

22945

CompoundHydrogen sulfide

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22945	16808 ChEBI	2-dehydro-D-gluconate	-	growth
22945	30916 ChEBI	2-oxoglutarate	-	growth
22945	47927 ChEBI	3-coumarate	-	growth
22945	37054 ChEBI	3-hydroxybutyrate	-	growth
22945	73918 ChEBI	3-O-methyl-D-glucose	-	growth
22945	51057 ChEBI	3-phenylpropionate	-	growth
22945	86394 ChEBI	5-aminovalerate	-	growth
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
22945	22599 ChEBI	arabinose	+	builds acid from
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
22945	16150 ChEBI	benzoate	-	growth
22945	17750 ChEBI	betaine	-	growth
22945	17057 ChEBI	cellobiose	-	builds acid from
22945	17057 ChEBI	cellobiose	-	growth
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
22945	16383 ChEBI	cis-aconitate	+	growth
22945	16947 ChEBI	citrate	+	growth
119044	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
22945	15570 ChEBI	D-alanine	+	growth
22945	18333 ChEBI	D-arabitol	-	growth
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
22945	15824 ChEBI	D-fructose	+	growth
22945	12936 ChEBI	D-galactose	+	growth
22945	18024 ChEBI	D-galacturonic acid	-	growth
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
22945	30612 ChEBI	D-glucarate	+	growth
22945	8391 ChEBI	D-gluconate	+	growth
22945	17315 ChEBI	D-glucosamine	+	growth
22945	17634 ChEBI	D-glucose	+	growth
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
22945	15748 ChEBI	D-glucuronate	+	growth
22945	62318 ChEBI	D-lyxose	-	growth
22945	16899 ChEBI	D-mannitol	+	growth
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
22945	16024 ChEBI	D-mannose	+	growth
22945	16988 ChEBI	D-ribose	+	growth
22945	17924 ChEBI	D-sorbitol	+	growth
22945	16443 ChEBI	D-tagatose	+	growth
22945	16551 ChEBI	D-trehalose	+	growth
22945	65327 ChEBI	D-xylose	+	growth
22945	27689 ChEBI	decanoate	-	growth
22945	17113 ChEBI	erythritol	-	growth
22945	4853 ChEBI	esculin	-	growth
22945	16000 ChEBI	ethanolamine	+	growth
22945	29806 ChEBI	fumarate	+	growth
22945	16537 ChEBI	galactarate	+	builds acid from
22945	16537 ChEBI	galactarate	+	growth
22945	16813 ChEBI	galactitol	+	builds acid from
22945	16813 ChEBI	galactitol	+	growth
22945	24175 ChEBI	galacturonate	-	builds acid from
22945	16865 ChEBI	gamma-aminobutyric acid	-	growth
22945	5291 ChEBI	gelatin	-	hydrolysis
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
22945	28066 ChEBI	gentiobiose	-	growth
22945	58044 ChEBI	gentisate	+	growth
22945	17234 ChEBI	glucose	+	builds gas from
119044	17234 ChEBI	glucose	+	degradation
22945	17859 ChEBI	glutarate	-	growth
22945	33871 ChEBI	glycerate	+	growth
22945	17754 ChEBI	glycerol	+	growth
22945	18295 ChEBI	histamine	-	growth
22945	16977 ChEBI	L-alanine	+	growth
22945	30849 ChEBI	L-arabinose	+	growth
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
22945	18403 ChEBI	L-arabitol	-	growth
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
22945	29991 ChEBI	L-aspartate	+	growth
22945	18287 ChEBI	L-fucose	+	growth
22945	29985 ChEBI	L-glutamate	+	growth
22945	15589 ChEBI	L-malate	+	growth
22945	17203 ChEBI	L-proline	+	growth
22945	62345 ChEBI	L-rhamnose	+	growth
68374	62345 ChEBI	L-rhamnose	+	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
22945	17115 ChEBI	L-serine	+	growth
22945	17266 ChEBI	L-sorbose	-	growth
22945	30924 ChEBI	L-tartrate	+	growth
22945	24996 ChEBI	lactate	+	growth
22945	17716 ChEBI	lactose	-	builds acid from
22945	17716 ChEBI	lactose	-	growth
119044	17716 ChEBI	lactose	-	fermentation
22945	6359 ChEBI	lactulose	-	growth
68374	25094 ChEBI	lysine	+	degradation	from API ID32E
68368	25094 ChEBI	lysine	+	degradation	from API 20E
22945	15792 ChEBI	malonate	-	growth
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
119044	15792 ChEBI	malonate	-	assimilation
22945	68428 ChEBI	maltitol	-	growth
22945	17306 ChEBI	maltose	+	builds acid from
22945	17306 ChEBI	maltose	+	growth
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
22945	61993 ChEBI	maltotriose	+	growth
22945	29864 ChEBI	mannitol	+	builds acid from
119044	29864 ChEBI	mannitol	+	fermentation
22945	37684 ChEBI	mannose	+	builds acid from
22945	6731 ChEBI	melezitose	-	growth
22945	28053 ChEBI	melibiose	+	growth
22945	28053 ChEBI	melibiose	+	builds acid from
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
22945	30928 ChEBI	meso-tartrate	+	growth
22945	55507 ChEBI	methyl alpha-D-galactoside	+	growth
22945	320061 ChEBI	methyl alpha-D-glucopyranoside	+	growth
22945	17540 ChEBI	methyl beta-D-galactoside	-	growth
22945	17268 ChEBI	myo-inositol	+	builds acid from
22945	17268 ChEBI	myo-inositol	+	growth
68374	17268 ChEBI	myo-inositol	+	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
22945	506227 ChEBI	N-acetyl-D-glucosamine	+	growth
22945	17632 ChEBI	nitrate	+	reduction
119044	17632 ChEBI	nitrate	+	reduction
119044	16301 ChEBI	nitrite	+	reduction
22945	25646 ChEBI	octanoate	-	growth
68374	18257 ChEBI	ornithine	+	degradation	from API ID32E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
22945	18394 ChEBI	palatinose	-	growth
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
22945	18401 ChEBI	phenylacetate	-	growth
68374		Potassium 5-ketogluconate	+	builds acid from	from API ID32E
22945	17272 ChEBI	propionate	+	growth
22945	36241 ChEBI	protocatechuate	-	growth
22945	17148 ChEBI	putrescine	-	growth
22945	26490 ChEBI	quinate	-	growth
22945	16634 ChEBI	raffinose	-	growth
22945	16634 ChEBI	raffinose	-	builds acid from
22945	26546 ChEBI	rhamnose	+	builds acid from
22945	15963 ChEBI	ribitol	-	builds acid from
22945	15963 ChEBI	ribitol	-	growth
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
22945	17814 ChEBI	salicin	-	builds acid from
119044	132112 ChEBI	sodium thiosulfate	+	builds gas from
22945	30911 ChEBI	sorbitol	+	builds acid from
68374	30911 ChEBI	sorbitol	+	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
22945	30031 ChEBI	succinate	+	growth
22945	17992 ChEBI	sucrose	-	builds acid from
22945	17992 ChEBI	sucrose	-	growth
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
22945	15708 ChEBI	trans-aconitate	-	growth
22945	27082 ChEBI	trehalose	+	builds acid from
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
22945	62517 ChEBI	tricarballylate	+	growth
22945	18123 ChEBI	trigonelline	-	growth
22945	16765 ChEBI	tryptamine	-	growth
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
22945	32528 ChEBI	turanose	-	growth
22945	16199 ChEBI	urea	-	hydrolysis
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
22945	17151 ChEBI	xylitol	+	builds acid from
22945	17151 ChEBI	xylitol	-	growth

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
119044	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
22945	16136 ChEBI	hydrogen sulfide
68368	16136 ChEBI	hydrogen sulfide	from API 20E
22945	35581 ChEBI	indole
68374	35581 ChEBI	indole	from API ID32E
119044	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119044	15688 ChEBI	acetoin	-
119044	17234 ChEBI	glucose
68374	35581 ChEBI	indole		from API ID32E
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
119044	alcohol dehydrogenase	-	1.1.1.1
68374	alpha-galactosidase	+	3.2.1.22	from API ID32E
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
22945	beta-galactosidase	-	3.2.1.23
119044	beta-galactosidase	-	3.2.1.23
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
22945	beta-glucuronidase	-	3.2.1.31
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
22945	catalase	+	1.11.1.6
119044	catalase	+	1.11.1.6
22945	cytochrome oxidase	-	1.9.3.1
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
22945	gelatinase	-
119044	gelatinase	-
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68374	lipase	+		from API ID32E
22945	lysine decarboxylase	+	4.1.1.18
119044	lysine decarboxylase	+	4.1.1.18
68374	lysine decarboxylase	+	4.1.1.18	from API ID32E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
22945	ornithine decarboxylase	+	4.1.1.17
119044	ornithine decarboxylase	+	4.1.1.17
68374	ornithine decarboxylase	+	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
119044	oxidase	-
119044	phenylalanine ammonia-lyase	-	4.3.1.24
119044	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
22945	urease	-	3.5.1.5
119044	urease	-	3.5.1.5
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
6727	-	+	+	+	+	+	-	-	-	-	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
6727	-	+	+	+	+	+	-	-	-	+	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
6727	-	+	+	+	+	+	-	-	-	+	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
6727	-	+	+	+	+	+	-	-	-	+/-	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
55324	+	+	+	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	+	-	+	-	-	+	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AE006468 (>99% sequence identity) for Salmonella enterica from Microbeatlas

Aquatic Samples	2005
Soil Samples	1084
Animal Samples	23018
Plant Samples	1996
Total Samples	28103

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6727	2	Risk group (German classification) According to TRBA 466
119044	2	Risk group (French classification) According to TRBA 466

Phages

@ref	Name	Strain number
124042	Salmonella phage vB_SenS-PT-JD20	DSM 17058
124042	Salmonella phage vB_SenS-BWB	DSM 17058

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	complete	99287.12	99287	99.4
124043	ASM1602849v1 assembly for Salmonella enterica FDAARGOS_878	complete	28901.13769	28901	99.21
66792	ASM694v2 assembly for Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	complete	99287.836	99287	99.14
66792	ASM155835v2 assembly for Salmonella enterica LT2	complete		28901	98.91
66792	ASM1433415v1 assembly for Salmonella enterica subsp. enterica serovar Typhimurium LT2	complete	90371.4767	90371	98.83
124043	ASM4036573v1 assembly for Salmonella enterica subsp. enterica NBRC 13245	contig		59201	71.3
66792	ASM228922v1 assembly for Salmonella enterica subsp. enterica serovar Typhimurium LT2	scaffold	90371.2610	90371	66.55
66792	PDT000127621.2 assembly for Salmonella enterica subsp. enterica serovar Typhimurium LT2	contig	90371.5161	90371	64.85
66792	PDT000436920.1 assembly for Salmonella enterica subsp. enterica serovar Typhimurium LT2	contig	90371.5160	90371	51.05
66792	31340_A02 assembly for Salmonella enterica subsp. enterica NCTC12416	contig	59201.937	59201	39.13

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Salmonella enterica subsp. enterica strain DSM 17058 16S ribosomal RNA gene, partial sequence	HQ012017	936	59201
20218	Salmonella enterica strain LT2 operon rrn, 16S-23S intergenic spacer region and tRNA-Glu gene, complete sequence	AF046813	393	28901
20218	Salmonella enterica strain LT2 operon rrn, 16S-23S intergenic spacer region, tRNA-Ile and tRNA-Ala genes, complete sequences	AF046814	516	28901
20218	Salmonella enterica subsp. enterica serovar Typhimurium gene for 16S rRNA, partial sequence	D12814	326	90371
20218	Salmonella enterica subsp. enterica gene for 16S rRNA, partial sequence, strain: NBRC 13245	AB680380	1467	59201

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
NCBI: GCA_000006945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.60	no
125439	motility	BacteriaNetⓘ	yes	69.10	no
125439	gram_stain	BacteriaNetⓘ	negative	93.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	81.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 LT2
NCBI: GCA_000006945.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	94.51	no
125438	aerobic	aerobicⓘ	no	75.26	no
125438	spore-forming	spore-formingⓘ	no	89.03	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	76.03	no

Literature

Title	Authors	Journal	DOI	Year
Environmental pH and compound structure affect the activity of short-chain carboxylic acids against planktonic growth, biofilm formation, and eradication of the food pathogen Salmonella enterica.	Ng K-S, Bambace MF, Andersen EB, Meyer RL, Schwab C.	Microbiol Spectr	10.1128/spectrum.01658-24	2024
Structural properties of short-chain carboxylic acids and alcohols relate to the molecular and physiological response of Salmonella enterica in an acidic environment.	Ng KS, Busche T, Ruckert-Reed C, Bambace MF, Sundekilde UK, Schwab C.	Appl Microbiol Biotechnol	10.1007/s00253-025-13608-w	2025
Potassium iodide enhances the antimicrobial activity of plasma-activated water.	McClenaghan LA, Thompson TP, Shambharkar A, Duncan RM, Bourke P, Skvortsov T, Gilmore BF.	Biofilm	10.1016/j.bioflm.2025.100313	2025
Pathogenic and Commensal Gut Bacteria Harboring Glycerol/Diol Dehydratase Metabolize Glycerol and Produce DNA-Reactive Acrolein.	Ramirez Garcia A, Hurley K, Marastoni G, Diard M, Hofer S, Greppi A, Hardt WD, Lacroix C, Sturla SJ, Schwab C.	Chem Res Toxicol	10.1021/acs.chemrestox.2c00137	2022
Development of Coated PLA Films Containing a Commercial Olive Leaf Extract for the Food Packaging Sector.	Fiorentini C, Leni G, de Apodaca ED, Fernandez-de-Castro L, Rocchetti G, Cortimiglia C, Spigno G, Bassani A.	Antioxidants (Basel)	10.3390/antiox13050519	2024
An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI.	Pearce ME, Langridge GC, Lauer AC, Grant K, Maiden MCJ, Chattaway MA.	Genomics	10.1016/j.ygeno.2021.07.003	2021
Citrus Peel Extracts for Industrial-Scale Production of Bio-Based Active Food Packaging.	Fiorentini C, Duserm Garrido G, Bassani A, Cortimiglia C, Zaccone M, Montalbano L, Martinez-Nogues V, Cocconcelli PS, Spigno G.	Foods	10.3390/foods11010030	2021
Engineering bacterial microcompartments with heterologous enzyme cargos.	Wagner HJ, Capitain CC, Richter K, Nessling M, Mampel J.	Eng Life Sci	10.1002/elsc.201600107	2017
Hatching of whipworm eggs induced by bacterial contact is serine-protease dependent.	Goulding D, Tolley C, Mkandawire TT, Doyle SR, Hart E, Airs PM, Grencis RK, Berriman M, Duque-Correa MA.	PLoS Pathog	10.1371/journal.ppat.1012502	2025
Microbial diagnostic microarray for food- and water-borne pathogens.	Kostic T, Stessl B, Wagner M, Sessitsch A, Bodrossy L.	Microb Biotechnol	10.1111/j.1751-7915.2010.00176.x	2010
Weissella sp. SNUL2 as potential probiotics with broad-spectrum antimicrobial activities.	Han JW, Lee N, Kim HJ, Moon SJ, Lee SC, Kim HJ.	Heliyon	10.1016/j.heliyon.2024.e28481	2024
Yeast Strains as Probiotic and Postbiotic Agents for the Agglutination of Enteric Pathogens: A Preventive Approach.	Cerdan-Alduan M, Salvador-Erro J, Villegas-Remirez A, Garcia-Yoldi D, Ceniceros A, Pastor Y, Gamazo C.	Pathogens	10.3390/pathogens14020113	2025
Beyond antiparasitic activity: elucidating the antibacterial potency of pyrvinium pamoate.	Alcaraz-Martinez A, Munoz-Baez P, Penalver P, Morales JC, Cebrian R.	Microbiol Spectr	10.1128/spectrum.02158-25	2025
Bacteriocin-Producing Lactic Acid Bacteria Strains with Antimicrobial Activity Screened from Bamei Pig Feces.	Chen J, Pang H, Wang L, Ma C, Wu G, Liu Y, Guan Y, Zhang M, Qin G, Tan Z.	Foods	10.3390/foods11050709	2022
Development of a selective and differential medium for effective isolation of Pectobacterium carotovorum from soft rot-infected agricultural products.	Baek JH, Lee SY, Bae JY, Oh SW.	Food Sci Biotechnol	10.1007/s10068-024-01748-0	2025
Point-of-Care Diagnostic System for Viable Salmonella Species via Improved Propidium Monoazide and Recombinase Polymerase Amplification Based Nucleic Acid Lateral Flow.	Lee SY, Oh SW.	Diagnostics (Basel)	10.3390/diagnostics14080831	2024
In vitro synergy of 5-nitrofurans, vancomycin and sodium deoxycholate against Gram-negative pathogens.	Olivera C, Le VVH, Davenport C, Rakonjac J.	J Med Microbiol	10.1099/jmm.0.001304	2021
Effects of Probiotic-Fermented Feed on the Growth Profile, Immune Functions, and Intestinal Microbiota of Bamei Piglets.	Zhang M, Yang Z, Wu G, Xu F, Zhang J, Luo X, Ma Y, Pang H, Duan Y, Chen J, Cai Y, Wang L, Tan Z.	Animals (Basel)	10.3390/ani14040647	2024
Optimization of resuscitation-promoting broths for the revival of Vibrio parahaemolyticus from a viable but nonculturable state.	Yoon JH, Bae YM, Jo S, Moon SK, Oh SW, Lee SY.	Food Sci Biotechnol	10.1007/s10068-020-00843-2	2021
Preparation of polyclonal antibody against a universal bacterial antigen OmpA deduced by bioinformatic analysis and preliminary evaluation of concentration effects on foodborne pathogens.	Wang L, Ke Y, Li Y, Li Y, Yan Y, Song Y, Yang R, Gao B, Han Y.	Heliyon	10.1016/j.heliyon.2023.e16353	2023
Application of sodium alginate-based edible coating with citric acid to improve the safety and quality of fresh-cut melon (Cucumis melo L.) during cold storage.	Song H, Jang AR, Lee S, Lee SY.	Food Sci Biotechnol	10.1007/s10068-023-01475-y	2024
Antibacterial Activity of Caffeic Acid Combined with UV-A Light against Escherichia coli O157:H7, Salmonella enterica Serovar Typhimurium, and Listeria monocytogenes.	Park MY, Kang DH.	Appl Environ Microbiol	10.1128/aem.00631-21	2021
Effects of Lactic Acid Bacteria Reducing the Content of Harmful Fungi and Mycotoxins on the Quality of Mixed Fermented Feed.	Guan Y, Lv H, Wu G, Chen J, Wang M, Zhang M, Pang H, Duan Y, Wang L, Tan Z.	Toxins (Basel)	10.3390/toxins15030226	2023
Genetic Identification and Technological Potential of Indigenous Lactic Acid Bacteria Isolated from Alheira, a Traditional Portuguese Sausage.	Fernandes N, Faria AS, Carvalho L, Choupina A, Rodrigues C, Gonzales-Barron U, Cadavez V.	Foods	10.3390/foods13040598	2024
UVC LED Irradiation Effectively Inactivates Aerosolized Viruses, Bacteria, and Fungi in a Chamber-Type Air Disinfection System.	Kim DK, Kang DH.	Appl Environ Microbiol	10.1128/aem.00944-18	2018
Effect of the precutting process on sanitizing treatments for reducing pathogens in vegetables.	Hwang JH, Yoon JH, Bae YM, Choi MR, Lee SY, Park KH.	Food Sci Biotechnol	10.1007/s10068-017-0073-7	2017
Applications of Light-Emitting Diodes (LEDs) in Food Processing and Water Treatment.	Prasad A, Du L, Zubair M, Subedi S, Ullah A, Roopesh MS.	Food Eng Rev	10.1007/s12393-020-09221-4	2020
Increased Resistance of Salmonella enterica Serovar Typhimurium and Escherichia coli O157:H7 to 222-Nanometer Krypton-Chlorine Excilamp Treatment by Acid Adaptation.	Kang JW, Kang DH.	Appl Environ Microbiol	10.1128/aem.02221-18	2019
Investigation of optimum ohmic heating conditions for inactivation of Escherichia coli O157:H7, Salmonella enterica serovar Typhimurium, and Listeria monocytogenes in apple juice.	Park IK, Ha JW, Kang DH.	BMC Microbiol	10.1186/s12866-017-1029-z	2017
Elevated Inactivation Efficacy of a Pulsed UVC Light-Emitting Diode System for Foodborne Pathogens on Selective Media and Food Surfaces.	Kim DK, Kang DH.	Appl Environ Microbiol	10.1128/aem.01340-18	2018
Decontamination Effect of the Spindle and 222-Nanometer Krypton-Chlorine Excimer Lamp Combination against Pathogens on Apples (Malus domestica Borkh.) and Bell Peppers (Capsicum annuum L.).	Kang JW, Kang DH.	Appl Environ Microbiol	10.1128/aem.00006-19	2019
Distribution of Gifsy-3 and of variants of ST64B and Gifsy-1 prophages amongst Salmonella enterica Serovar Typhimurium isolates: evidence that combinations of prophages promote clonality.	Hiley L, Fang NX, Micalizzi GR, Bates J.	PLoS One	10.1371/journal.pone.0086203	2014
Hydrophilic and lipophilic characteristics of non-fatty acid moieties: significant factors affecting antibacterial activity of lauric acid esters.	Park KM, Lee SJ, Yu H, Park JY, Jung HS, Kim K, Lee CJ, Chang PS.	Food Sci Biotechnol	10.1007/s10068-018-0353-x	2018
Inactivation Kinetics and Membrane Potential of Pathogens in Soybean Curd Subjected to Pulsed Ohmic Heating Depending on Applied Voltage and Duty Ratio.	Cho ER, Kim SS, Kang DH.	Appl Environ Microbiol	10.1128/aem.00656-20	2020
Development of an improved selective and differential medium for isolation of Salmonella spp.	Park SH, Ryu S, Kang DH.	J Clin Microbiol	10.1128/jcm.01228-12	2012
Effect of electropermeabilization by ohmic heating for inactivation of Escherichia coli O157:H7, Salmonella enterica serovar Typhimurium, and Listeria monocytogenes in buffered peptone water and apple juice.	Park IK, Kang DH.	Appl Environ Microbiol	10.1128/aem.01818-13	2013
The Synergistic Bactericidal Mechanism of Simultaneous Treatment with a 222-Nanometer Krypton-Chlorine Excilamp and a 254-Nanometer Low-Pressure Mercury Lamp.	Kang JW, Kang DH.	Appl Environ Microbiol	10.1128/aem.01952-18	2019
Biodegradation of Azo Dye Methyl Red by Pseudomonas aeruginosa: Optimization of Process Conditions.	Ikram M, Naeem M, Zahoor M, Rahim A, Hanafiah MM, Oyekanmi AA, Shah AB, Mahnashi MH, Al Ali A, Jalal NA, Bantun F, Sadiq A.	Int J Environ Res Public Health	10.3390/ijerph19169962	2022
Effect of frequency and waveform on inactivation of Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in salsa by ohmic heating.	Lee SY, Ryu S, Kang DH.	Appl Environ Microbiol	10.1128/aem.01802-12	2013
Simultaneous near-infrared radiant heating and UV radiation for inactivating Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in powdered red pepper (Capsicum annuum L.).	Ha JW, Kang DH.	Appl Environ Microbiol	10.1128/aem.02249-13	2013
Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Salmonella spp. in a broad spectrum of samples.	Almeida C, Almeida C, Azevedo NF, Fernandes RM, Keevil CW, Vieira MJ.	Appl Environ Microbiol	10.1128/aem.01678-09	2010
Evaluation of near-infrared pasteurization in controlling Escherichia coli O157:H7, Salmonella enterica serovar typhimurium, and Listeria monocytogenes in ready-to-eat sliced ham.	Ha JW, Ryu SR, Kang DH.	Appl Environ Microbiol	10.1128/aem.00942-12	2012
Using UVC Light-Emitting Diodes at Wavelengths of 266 to 279 Nanometers To Inactivate Foodborne Pathogens and Pasteurize Sliced Cheese.	Kim SJ, Kim DK, Kang DH.	Appl Environ Microbiol	10.1128/aem.02092-15	2016
Fundamental Characteristics of Deep-UV Light-Emitting Diodes and Their Application To Control Foodborne Pathogens.	Shin JY, Kim SJ, Kim DK, Kang DH.	Appl Environ Microbiol	10.1128/aem.01186-15	2016
Chemical Profile and Bioactivities of Extracts from Edible Plants Readily Available in Portugal.	Silva BN, Cadavez V, Ferreira-Santos P, Alves MJ, Ferreira ICFR, Barros L, Teixeira JA, Gonzales-Barron U.	Foods	10.3390/foods10030673	2021
Enhanced inactivation of food-borne pathogens in ready-to-eat sliced ham by near-infrared heating combined with UV-C irradiation and mechanism of the synergistic bactericidal action.	Ha JW, Kang DH.	Appl Environ Microbiol	10.1128/aem.01862-14	2015
Identification and functional characterization of a novel monotreme- specific antibacterial protein expressed during lactation.	Bisana S, Kumar S, Rismiller P, Nicol SC, Lefevre C, Nicholas KR, Sharp JA.	PLoS One	10.1371/journal.pone.0053686	2013
Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes.	Ramisse V, Houssu P, Hernandez E, Denoeud F, Hilaire V, Lisanti O, Ramisse F, Cavallo JD, Vergnaud G.	J Clin Microbiol	10.1128/jcm.42.12.5722-5730.2004	2004
Monotreme lactation protein is highly expressed in monotreme milk and provides antimicrobial protection.	Enjapoori AK, Grant TR, Nicol SC, Lefevre CM, Nicholas KR, Sharp JA.	Genome Biol Evol	10.1093/gbe/evu209	2014
Comparison of conventional PCR, multiplex PCR, and loop-mediated isothermal amplification assays for rapid detection of Arcobacter species.	Wang X, Seo DJ, Lee MH, Choi C.	J Clin Microbiol	10.1128/jcm.02883-13	2014
Agreement, precision, and accuracy of epifluorescence microscopy methods for enumeration of total bacterial numbers.	Seo EY, Ahn TS, Zo YG.	Appl Environ Microbiol	10.1128/aem.01724-09	2010
Detection of Vibrio cholerae by real-time nucleic acid sequence-based amplification.	Fykse EM, Skogan G, Davies W, Olsen JS, Blatny JM.	Appl Environ Microbiol	10.1128/aem.01635-06	2007
Evaluation of a loop-mediated isothermal amplification suite for the rapid, reliable, and robust detection of Shiga toxin-producing Escherichia coli in produce.	Wang F, Yang Q, Qu Y, Meng J, Ge B.	Appl Environ Microbiol	10.1128/aem.04203-13	2014
Can phlorotannins purified extracts constitute a novel pharmacological alternative for microbial infections with associated inflammatory conditions?	Lopes G, Sousa C, Silva LR, Pinto E, Andrade PB, Bernardo J, Mouga T, Valentao P.	PLoS One	10.1371/journal.pone.0031145	2012
Detection of Salmonella spp. in oysters by PCR.	Bej AK, Mahbubani MH, Boyce MJ, Atlas RM.	Appl Environ Microbiol	10.1128/aem.60.1.368-373.1994	1994
PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp.	Cohen HJ, Mechanda SM, Lin W.	Appl Environ Microbiol	10.1128/aem.62.12.4303-4308.1996	1996
A DNA microarray for the versatile diagnosis of infectious diarrhea.	Donatin E, Buffet S, Leroy Q, Raoult D, Drancourt M.	APMIS	10.1111/apm.12081	2013
Evaluation of Simultaneous Growth of Escherichia coli O157:H7, Salmonella spp., and Listeria monocytogenes in Ground Beef Samples in Different Growth Media.	Sousa JM, Barbosa A, Araujo D, Castro J, Azevedo NF, Cerqueira L, Almeida C.	Foods	10.3390/foods13132095	2024
Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes.	Krishnakant Kushwaha S, Wu Y, Leonardo Avila H, Anand A, Sicheritz-Ponten T, Millard A, Amol Marathe S, Nobrega FL.	PLoS Biol	10.1371/journal.pbio.3002746	2024
Salmonella carriage and change in serovar distribution in broiler giblets at slaughterhouse level in Turkiye: first report using ISO 6579-1:2017 and ISO 6579-3:2014.	Akgun Z, Coskun AG, Cetin E, Temelli S, Eyigor A.	Poult Sci	10.1016/j.psj.2024.103805	2024
The impact of rhubarb (Rheum Ribes L.) juice-based marinade on the quality characteristics and microbial safety of chicken breast fillets during refrigerated storage.	Karatepe P, Kursad Incili G, Tekin A, Calicioglu M, Akgol M, Hayaloglu AA.	Poult Sci	10.1016/j.psj.2024.104719	2025
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References

#6727	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17058
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22945	Leon Le Minor, Michel Y. Popoff: Designation of Salmonella enterica sp. nov., nom. rev., as the Type and Only Species of the Genus Salmonella: Request for an Opinion. IJSEM 37: 465 - 468 1987 ( DOI 10.1099/00207713-37-4-465 , PubMed 10319519 )
#33584	; Curators of the CIP;
#55324	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42060
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119044	Collection of Institut Pasteur ; Curators of the CIP; CIP 60.62
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salmonella enterica subsp. enterica (DSM 17058, ATCC 43971, CIP 60.62)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 20E

API ID32E

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Phages

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Genome sequences

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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