Strain identifier
BacDive ID: 5111
Type strain: 
Species: Salmonella enterica subsp. enterica
Strain Designation: 775/W, Col Sal 385/57, 493, W 775, 775W
Strain history: <- ATCC <- NCTC (Salmonella sp.) <- J. Taylor; 493
NCBI tax ID(s): 59201 (subspecies)
version 9.1 (current version)
General
@ref: 3788
BacDive-ID: 5111
DSM-Number: 10062
keywords: genome sequence, Bacteria, motile
description: Salmonella enterica subsp. enterica 775/W is a motile bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 59201
- Matching level: subspecies
strain history
- @ref: 3788
- history: <- ATCC <- NCTC (Salmonella sp.) <- J. Taylor; 493
doi: 10.13145/bacdive5111.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica subsp. enterica
- full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
- @ref: 20215
- synonym: Salmonella choleraesuis subsp. choleraesuis
@ref: 3788
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica subsp. enterica
full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
strain designation: 775/W, Col Sal 385/57, 493, W 775, 775W
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 3788 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 3788 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
culture temp
- @ref: 3788
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68368 | 30849 | L-arabinose | + | fermentation |
| 68368 | 27613 | amygdalin | - | fermentation |
| 68368 | 28053 | melibiose | + | fermentation |
| 68368 | 17992 | sucrose | - | fermentation |
| 68368 | 62345 | L-rhamnose | + | fermentation |
| 68368 | 30911 | sorbitol | + | fermentation |
| 68368 | 17268 | myo-inositol | - | fermentation |
| 68368 | 16899 | D-mannitol | + | fermentation |
| 68368 | 17634 | D-glucose | + | fermentation |
| 68368 | 5291 | gelatin | - | hydrolysis |
| 68368 | 27897 | tryptophan | - | energy source |
| 68368 | 16199 | urea | - | hydrolysis |
| 68368 | 16947 | citrate | + | assimilation |
| 68368 | 18257 | ornithine | + | degradation |
| 68368 | 25094 | lysine | + | degradation |
| 68368 | 29016 | arginine | + | hydrolysis |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 68368 | 35581 | indole | no |
| 68368 | 16136 | hydrogen sulfide | no |
metabolite tests
- @ref: 68368
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68368 | cytochrome oxidase | - | 1.9.3.1 |
| 68368 | gelatinase | - | |
| 68368 | tryptophan deaminase | - | 4.1.99.1 |
| 68368 | urease | - | 3.5.1.5 |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 |
| 68368 | lysine decarboxylase | + | 4.1.1.18 |
| 68368 | arginine dihydrolase | + | 3.5.3.6 |
| 68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
| @ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3788 | - | + | + | + | + | - | - | - | - | + | - | + | + | - | + | + | - | + | - | + | - |
| 3788 | - | + | + | + | + | - | - | - | - | - | - | + | + | - | + | + | - | + | - | + | - |
Safety information
risk assessment
- @ref: 3788
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salmonella enterica subsp. enterica serovar Senftenberg 775W (ATCC 43845) | GCA_001969425 | complete | ncbi | 28150 |
| 66792 | Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 | GCA_000486525 | complete | ncbi | 930772 |
| 66792 | Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 | 930772.3 | wgs | patric | 930772 |
| 66792 | Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 | 930772.4 | plasmid | patric | 930772 |
| 66792 | Salmonella enterica subsp. enterica serovar Senftenberg strain 775W | 28150.29 | complete | patric | 28150 |
| 66792 | Salmonella enterica subsp. enterica serovar Senftenberg strain 775W strain 775W (ATCC 43845) | 28150.46 | plasmid | patric | 28150 |
| 66792 | Salmonella enterica enterica sv. Senftenberg ATCC 43845 | 2852366756 | complete | img | 930772 |
| 66792 | Salmonella enterica enterica sv. Senftenberg ATCC 43845 | 2872672955 | complete | img | 930772 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.34 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 73.537 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.132 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 75.61 | no |
External links
@ref: 3788
culture collection no.: DSM 10062, ATCC 43845, NCTC 9959
straininfo link
- @ref: 74604
- straininfo: 45171
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Biotechnology | 10772209 | Inactivation of Salmonella Enteritidis, Salmonella Typhimurium, and Salmonella Senftenberg by ultrasonic waves under pressure. | Manas P, Pagan R, Raso J, Sala FJ, Condon S | J Food Prot | 10.4315/0362-028x-63.4.451 | 2000 | Animals, Chickens, *Food Microbiology, Food Preservation/*methods, Ovum/microbiology, *Salmonella, Salmonella enteritidis, Salmonella typhimurium, Ultrasonics | |
| Biotechnology | 12927706 | Predicting thermal inactivation in media of different pH of Salmonella grown at different temperatures. | Manas P, Pagan R, Raso J, Condon S | Int J Food Microbiol | 10.1016/s0168-1605(03)00049-7 | 2003 | Culture Media/chemistry, Food Microbiology, *Hydrogen-Ion Concentration, Kinetics, Mathematics, Models, Biological, Salmonella/*growth & development, Salmonella enteritidis/growth & development, Salmonella typhimurium/growth & development, *Temperature | Enzymology |
| Genetics | 28293682 | Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms. | Nguyen SV, Harhay GP, Bono JL, Smith TP, Harhay DM | mSystems | 10.1128/mSystems.00190-16 | 2017 | Phylogeny | |
| Genetics | 29954894 | Complete Genome Sequence of the Novel Virulent Phage PMBT28 with Lytic Activity against Thermotolerant Salmonella enterica subsp. enterica Serovar Senftenberg ATCC 43845. | Koberg S, Brinks E, Albrecht V, Neve H, Franz CMAP | Genome Announc | 10.1128/genomeA.00568-18 | 2018 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3788 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10062) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10062 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 68368 | Automatically annotated from API 20E | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 74604 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45171.1 | StrainInfo: A central database for resolving microbial strain identifiers |