Strain identifier

BacDive ID: 5108

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: Hochberg 2460

Strain history: <- ATCC <- F. Schift; Hochberg 2460

NCBI tax ID(s): 59201 (subspecies)

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General

@ref: 3486

BacDive-ID: 5108

DSM-Number: 9145

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative

description: Salmonella enterica subsp. enterica Hochberg 2460 is a Gram-negative bacterium that was isolated from baby.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

  • @ref: 3486
  • history: <- ATCC <- F. Schift; Hochberg 2460

doi: 10.13145/bacdive5108.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 3486

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: Hochberg 2460

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 3486
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 3486
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

Isolation, sampling and environmental information

isolation

  • @ref: 3486
  • sample type: baby
  • geographic location: New York
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Juvenile

taxonmaps

  • @ref: 69479
  • File name: preview.99_9.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_8;99_9&stattab=map
  • Last taxonomy: Salmonella enterica
  • 16S sequence: AF057360
  • Sequence Identity:
  • Total samples: 28103
  • soil counts: 1084
  • aquatic counts: 2005
  • animal counts: 23018
  • plant counts: 1996

Safety information

risk assessment

  • @ref: 3486
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Salmonella gallinarum 16S ribosomal RNA gene, partial sequence
  • accession: AF057360
  • length: 1201
  • database: nuccore
  • NCBI tax ID: 594

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Panama str. ATCC 7378GCA_000486765completencbi1124961
66792Salmonella enterica subsp. enterica serovar Panama str. ATCC 73781124961.3wgspatric1124961
66792Salmonella enterica enterica sv. Panama ATCC 7378 GCA_0004867652558860442completeimg1124961

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno100no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.236no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no75.399no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.532no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.5yes
69480flagellatedmotile2+Ability to perform flagellated movementyes75.87no

External links

@ref: 3486

culture collection no.: DSM 9145, ATCC 7378

straininfo link

  • @ref: 74602
  • straininfo: 46376

literature

  • Pubmed-ID: 26988049
  • title: Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791).
  • authors: Yao K, Muruvanda T, Roberts RJ, Payne J, Allard MW, Hoffmann M
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00133-16
  • year: 2016

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3486Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9145)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9145
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74602Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46376.1StrainInfo: A central database for resolving microbial strain identifiers