Name: Clostridium sp. C8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2692

Type strain:

Species: Clostridium sp.

Strain Designation: C8

Culture col. no.: DSM 11329, IAM 19232, JCM 7847

Strain history: IAM 19232 <-- S. Sugama <-- Inst. Pasteur; C8.

NCBI tax ID(s): 1506 (species)

SI-ID 49080

DSM 11329, IAM 19232, JCM 7847

Special Collections

DSMZ
JCM

Other strains from Clostridium sp.

Section

Clostridium sp. C8 is an anaerobe, spore-forming bacterium that was isolated from retting Ramie .

spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Full Scientific Name (LPSN)	Clostridium Prazmowski 1880 (Approved Lists 1980)

	Synonym	"Tyzzerella"
	Synonym	"Pseudoclostridium"
	Synonym	"Lachnoclostridium"
	Synonym	Anaerobacter
	Synonym	"Inflabilis"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4300]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #4300]

Culture medium growth

[Ref.: #4300]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4300]

Culture medium composition

expand / minimize

[Ref.: #4300]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #4300]

Culture medium growth

[Ref.: #4300]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4300]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4300]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4300]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4300]	Sample type/isolated from	retting Ramie (Boehmeria nivea)
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB971810 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	1977
Soil Samples	1985
Animal Samples	5931
Plant Samples	442
Total Samples	10335

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium beijerinckii gene for 16S ribosomal RNA, partial sequence, strain: JCM 7847	AB971810	1473	GenBank ENA	1520 tax ID
[Ref.: #20218]	Clostridium beijerinckii gene for 16S rRNA, partial sequence, strain: JCM 7847	AB020191	1404	GenBank ENA	1520 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium sp. C8	GCA_001010885	contig	GenBank ENA	1667357 tax ID	*
[Ref.: #66792]	Clostridium sp. C8	1667357.4	wgs	PATRIC	1667357 tax ID	*
[Ref.: #66792]	Clostridium sp. C8	2630968386	draft	JGI IMG/M	1667357 tax ID	*

[Ref.: #67770]

GC-content

31 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sp. C8 PATRIC: 1667357.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	67.312	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.251	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	82.224	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.466	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.901	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.168	no

Availability in culture collections External links

[Ref.: #4300]

Culture collection no.

DSM 11329, IAM 19232, JCM 7847

[Ref.: #72220]

SI-ID 49080

References

#4300

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11329

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72220

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49080.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF