Clostridium beijerinckii (DSM 11329, IAM 19232, JCM 7847)

Name: Clostridium beijerinckii (DSM 11329, IAM 19232, JCM 7847)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2692

Type strain

Strain Designation C8

Culture col. no. DSM 11329 IAM 19232 JCM 7847 C8

NCBI tax ID(s) 1520

Special Collections DSMZ JCM

History <- JCM; JCM 7847 <- IAM; IAM 19232 <- S. Sugama, Inst. Pasteur; C8 (Clostridium pectinolyticum) IAM 19232 <-- S. Sugama <-- Inst. Pasteur; C8.

Links

Clostridium beijerinckii C8 is an anaerobe bacterium that was isolated from retting Ramie .

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49080

DSM 11329,IAM 19232,JCM 7847

@ref 20215

Last LPSN update 2026-02-09 11:18:20

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium beijerinckii

Full scientific name Clostridium beijerinckii Donker 1926 (Approved Lists 1980)

Synonyms (1)

Clostridium diolis

BacDive ID	Other strains from **Clostridium beijerinckii** (30)	Type strain
2548	C. beijerinckii E. McCoy A-67, L.S. McClung 1671, 10026, ... (type strain)
2547	C. beijerinckii DSM 552, VKM B-1773
2549	C. beijerinckii N.O. Sjolander and McCoy, 67, 7, N.O. Sjolander ...
2550	C. beijerinckii 2287, McClung, A-14, 2287, McClung, DSM 1739, ...
2551	C. beijerinckii DSM 51, ATCC 17797 (1969)
2552	C. beijerinckii 34, Ng 34, DSM 53, ATCC 14949, NCIMB 9503, ...
2553	C. beijerinckii A-39, DSM 6422, NRRL B-592
2554	C. beijerinckii A-21, DSM 6423, NRRL B-593
2555	C. beijerinckii KT-1P, DSM 13821
2819	C. beijerinckii 88-273, SH1, DSM 15410, ATCC BAA-557, DSM ...
158905	C. beijerinckii WB01-NA02, DSM 105335
165626	C. beijerinckii JCM 7833, IAM 19015
165630	C. beijerinckii JCM 7837, IAM 19225
165631	C. beijerinckii JCM 7838, IAM 19240, IFO 3859, NBRC 3859, ...
165632	C. beijerinckii JCM 7839, IAM 19092
165633	C. beijerinckii JCM 7840, IAM 19108
165685	C. beijerinckii JCM 7986, IAM 19046
165689	C. beijerinckii JCM 7990, IAM 19050
165696	C. beijerinckii JCM 7997, IAM 19060
165721	C. beijerinckii JCM 8023, ATCC 14823, ATCC 6014, IAM 19002, ...
165722	C. beijerinckii JCM 8024, IAM 19006
165723	C. beijerinckii JCM 8025, IAM 19007, NRRL B-591
165724	C. beijerinckii JCM 8026, IAM 19008, NRRL B592
165725	C. beijerinckii JCM 8027, IAM 19093
165726	C. beijerinckii JCM 8028, IAM 19105
165727	C. beijerinckii JCM 8030, IAM 19091
165728	C. beijerinckii JCM 8031, IAM 19106
165729	C. beijerinckii JCM 8032, IAM 19094
165730	C. beijerinckii JCM 8033, IAM 19095
165731	C. beijerinckii JCM 8034, IAM 19098

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4300	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
4300	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4300	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4300	anaerobe
125439	facultative anaerobe	98.7

Spore formation

@ref	Spore formation	Confidence
125439		90

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

4300

Sample typeretting Ramie (Boehmeria nivea)

Taxonmaps

69479

Global distribution of 16S sequence AB971810 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	1977
Soil Samples	1985
Animal Samples	5931
Plant Samples	442
Total Samples	10335

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM101088v1 assembly for Clostridium sp. C8	contig	GCA_001010885	1667357.4	2630968386	1667357	53.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Clostridium beijerinckii gene for 16S rRNA, partial sequence, strain: JCM 7847	AB020191	1404		1520
67770	Clostridium beijerinckii gene for 16S ribosomal RNA, partial sequence, strain: JCM 7847	AB971810	1473		1520

GC content

@ref	GC-content (mol%)	Method
67770	31	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium sp. C8
NCBI: GCA_001010885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.00	no
125439	motility	BacteriaNetⓘ	yes	85.70	no
125439	gram_stain	BacteriaNetⓘ	positive	82.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. C8
PATRIC: 1667357.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	67.31	no
125438	anaerobic	anaerobicⓘ	yes	87.25	yes
125438	spore-forming	spore-formingⓘ	yes	82.22	no
125438	aerobic	aerobicⓘ	no	97.47	yes
125438	thermophilic	thermophileⓘ	no	91.90	yes
125438	flagellated	motile2+ⓘ	yes	81.17	no

Literature

References

#4300	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11329
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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