Name: Clostridium frigoriphilum 14F
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130245

Type strain:

Species: Clostridium frigoriphilum

Strain Designation: 14F

Culture col. no.: DSM 17811, VKM B-2368

Strain history: <- S. Pecheritsyna, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; 14F <- S. A. Pecheritsyna {2005}

NCBI tax ID(s): 2843317 (species)

Special Collections

DSMZ

Section

Clostridium frigoriphilum 14F is an anaerobe, spore-forming bacterium that was isolated from water brine within permafrost.

spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	"Clostridium frigoriphilum"
	Full Scientific Name (LPSN)	Clostridium frigoriphilum Dorn-In et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #21879]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21879]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)

[Ref.: #21879]

Culture medium growth

[Ref.: #21879]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21879]

Culture medium composition

expand / minimize

[Ref.: #21879]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #21879]

Culture medium growth

[Ref.: #21879]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #21879]			growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21879]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21879]	Sample type/isolated from	water brine within permafrost
[Ref.: #21879]	Geographic location (country and/or sea, region)	Northern Eurasia, Siberia, Kolyma Lowland
[Ref.: #21879]	Country	Russia
[Ref.: #21879]	Country ISO 3 Code	RUS
[Ref.: #21879]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Permafrost
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF570920 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	5428
Soil Samples	9246
Animal Samples	1548
Plant Samples	2245
Total Samples	18467

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21879]	Clostridium frigoriphilum strain 14F 16S ribosomal RNA gene, partial sequence	EF570920	1388	GenBank ENA	443253 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium sp. DSM 17811	GCA_018861905	contig	GenBank ENA	2843317 tax ID	*
[Ref.: #66792]	Clostridium sp. DSM 17811	2843317.3	wgs	PATRIC	2843317 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium sp. DSM 17811 PATRIC: 2843317.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sp. DSM 17811 PATRIC: 2843317.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	68.91	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	84.76	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	78.274	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.086	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.911	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.92	no

Availability in culture collections External links

[Ref.: #21879]

Culture collection no.

DSM 17811, VKM B-2368

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21879

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17811

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Clostridium sp. DSM 17811

Clostridium sp. DSM 17811

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