Clostridium sp. (DSM 5906, BKM B-1364, VKM B-1364)

Name: Clostridium sp. (DSM 5906, BKM B-1364, VKM B-1364)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2678

Type strain

Strain Designation 4

Culture col. no. DSM 5906 BKM B-1364 VKM B-1364 4

NCBI tax ID(s) 1506

Special Collections DSMZ

Links

4 is an anaerobe, mesophilic prokaryote that was isolated from rice soil.

anaerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 48026

DSM 5906,VKM B-1364

@ref 20215

Last LPSN update 2025-12-16 09:47:22

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Full scientific name Clostridium Prazmowski 1880 (Approved Lists 1980)

Synonyms (8)

Thomasclavelia
"Erysipelatoclostridium"
"Pseudoclostridium"
"Andreesenella"
"Tyzzerella"
"Lachnoclostridium"
Anaerobacter
"Inflabilis"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2355	CLOSTRIDIUM (GV) MEDIUM (DSMZ Medium 500)		Medium recipe at MediaDive	Name: CLOSTRIDIUM (GV) MEDIUM (DSMZ Medium 500) Composition: D-Glucose 4.97512 g/l NaHCO3 2.98507 g/l NaCl 2.23881 g/l Yeast extract 0.995025 g/l NH4Cl 0.497512 g/l MgSO4 x 7 H2O 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Pyridoxine hydrochloride 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2355	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

2355

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2355	rice soil	Kuban	Russia	RUS	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Clostridium sp. 4	complete	2593339124	1485	26.03

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Clostridium corinoforum partial 16S rRNA gene, strain DSM 5906	X76742	1500		36836

GC content

2355

GC-content (mol%)35.0

Genome-based predictions

Literature

References

#2355	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5906
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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