Cite this strain

Clostridium sp. (JCM 10519)

Name: Clostridium sp. (JCM 10519)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160974

Type strain

Culture col. no. JCM 10519

NCBI tax ID(s) 1095009

Special Collections JCM

History M. Ohkuma NkU-1.

Links

JCM 10519 is a bacterium that was isolated from Termite gut.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131384

JCM 10519

@ref 20215

Last LPSN update 2026-02-09 11:39:01

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Full scientific name Clostridium Prazmowski 1880 (Approved Lists 1980)

Synonyms (8)

Thomasclavelia
"Erysipelatoclostridium"
"Pseudoclostridium"
"Andreesenella"
"Tyzzerella"
"Lachnoclostridium"
Anaerobacter
"Inflabilis"

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.6

Isolation, sampling and environmental information

Isolation

67770

Sample typeTermite gut

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM131240v1 assembly for Clostridium sp. NkU-1 JCM 10519	contig	GCA_001312405	1095009.4	2728369723	1095009	38.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Clostridium sp. NkU-1 gene for 16S rRNA, partial sequence	AB673451	1479		1095009

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium sp. NkU-1 JCM 10519
NCBI: GCA_001312405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no
125439	gram_stain	BacteriaNetⓘ	variable	79.40	no
125439	motility	BacteriaNetⓘ	yes	82.70	no
125439	spore_formation	BacteriaNetⓘ	yes	79.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. NkU-1 strain JCM 10519
PATRIC: 1095009.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.10	no
125438	anaerobic	anaerobicⓘ	yes	88.48	no
125438	spore-forming	spore-formingⓘ	yes	61.96	no
125438	aerobic	aerobicⓘ	no	95.57	no
125438	thermophilic	thermophileⓘ	no	95.74	yes
125438	flagellated	motile2+ⓘ	yes	74.02	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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