Name: Clostridium sp. JCM 10522
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160976

Type strain:

Species: Clostridium sp.

Culture col. no.: JCM 10522

Strain history: M. Ohkuma Hs50.

NCBI tax ID(s): 1095012 (species)

Special Collections

Other strains from Clostridium sp.

Section

Clostridium sp. JCM 10522 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from Termite gut.

Gram-positive
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Full Scientific Name (LPSN)	Clostridium Prazmowski 1880 (Approved Lists 1980)

	Synonym	"Tyzzerella"
	Synonym	"Pseudoclostridium"
	Synonym	"Lachnoclostridium"
	Synonym	Anaerobacter
	Synonym	"Inflabilis"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %91.849

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Termite gut
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB673454 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	3962
Soil Samples	4923
Animal Samples	31978
Plant Samples	1109
Total Samples	41972

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium sp. Hs50 gene for 16S rRNA, partial sequence	AB673454	1474	GenBank ENA	1095012 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium sp. Hs50 JCM 10522	GCA_001312425	contig	GenBank ENA	1095012 tax ID	*
[Ref.: #66792]	Clostridium sp. Hs50 strain JCM 10522	1095012.4	wgs	PATRIC	1095012 tax ID	*
[Ref.: #66792]	Clostridium sp. JCM 10522	2728369724	draft	JGI IMG/M	1095012 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clostridium sp. Hs50 strain JCM 10522 PATRIC: 1095012.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sp. Hs50 strain JCM 10522 PATRIC: 1095012.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	63.848	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	91.849	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	73.533	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.55	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.427	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.589	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10522

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Clostridium sp. Hs50 strain JCM 10522

Clostridium sp. Hs50 strain JCM 10522

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