Clostridium sp. (DSM 104276, HV4-5-A1G)

Name: Clostridium sp. (DSM 104276, HV4-5-A1G)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158916

Type strain

Strain Designation HV4-5-A1G

Culture col. no. DSM 104276 HV4-5-A1G

NCBI tax ID(s) 1506

Special Collections DSMZ

History DSMZ <- S. Hahnke; HV4-5-A1G (Clostridium luticellarii) <- T. Langer

Links

HV4-5-A1G is a bacterium that was isolated from Process fluid from a laboratory-scale fermenter treating grass cutting.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 406798

DSM 104276

@ref 20215

Last LPSN update 2026-05-29 08:44:04

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Full scientific name Clostridium Prazmowski 1880 (Approved Lists 1980)

Synonyms (6)

"Pseudoclostridium"
"Lachnoclostridium"
Anaerobacter
"Inflabilis"
Thomasclavelia
"Erysipelatoclostridium"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65738	CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)		Medium recipe at MediaDive	Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65738	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	94.309
125439	anaerobe	99.081

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Engineered	#Laboratory	#Lab enrichment
#Engineered	#Bioreactor	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65738	Process fluid from a laboratory-scale fermenter treating grass cutting	Jena	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM869276v1 assembly for Clostridium sp. HV4-5-A1G	contig	GCA_008692765	2004595.3	8021179190	2004595	20.31
66792	Clostridium_HV4-5-A1G assembly for Clostridium sp. HV4-5-A1G	contig	GCA_900184915	2004595.4		2004595	0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM869276v1 assembly for Clostridium sp. HV4-5-A1G
BV-BRC: 2004595.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.08	no
125439	motility	BacteriaNetⓘ	yes	70.45	no
125439	gram_stain	BacteriaNetⓘ	variable	60.01	no
125439	spore_formation	BacteriaNetⓘ	yes	71.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. HV4-5-A1G
PATRIC: 2004595.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	61.59	no
125438	anaerobic	anaerobicⓘ	yes	94.31	no
125438	spore-forming	spore-formingⓘ	yes	74.36	no
125438	aerobic	aerobicⓘ	no	97.63	no
125438	thermophilic	thermophileⓘ	no	88.07	yes
125438	flagellated	motile2+ⓘ	yes	74.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of a New Clostridium sp. Isolated from Anaerobic Digestion and Biomethanation.	Hahnke S, Abendroth C, Pascual J, Langer T, Ramm P, Klocke M, Luschnig O, Porcar M	Microbiol Resour Announc	10.1128/MRA.01472-19	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65738	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104276
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium sp. (DSM 104276, HV4-5-A1G)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008692765

Genome-based predictions

Predictions

Literature

Literature

References

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