Clostridium sp. (DSM 107452, SM-530-WT-3G)

Name: Clostridium sp. (DSM 107452, SM-530-WT-3G)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158917

Type strain

Strain Designation SM-530-WT-3G

Culture col. no. DSM 107452 SM-530-WT-3G

NCBI tax ID(s) 2675590

Special Collections DSMZ Pig DZIF

History <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; SM-530-WT-3G

Links

SM-530-WT-3G is a bacterium that was isolated from feces; pig, 7 month old, wild type.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401896

DSM 107452

@ref 20215

Last LPSN update 2026-02-09 11:38:27

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Full scientific name Clostridium Prazmowski 1880 (Approved Lists 1980)

Synonyms (8)

Thomasclavelia
"Erysipelatoclostridium"
"Pseudoclostridium"
"Andreesenella"
"Tyzzerella"
"Lachnoclostridium"
Anaerobacter
"Inflabilis"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65739	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65739	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65739	feces; pig, 7 month old, wild type	Kranzberg (Bavaria)	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1284390v1 assembly for Clostridium sp. SM-530-WT-3G	contig	GCA_012843905	2725303.3	3005917516	2725303	55.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65739	Clostridium sp. DSM 107452 16S ribosomal RNA gene, partial sequence	MN537539	1477		2675590

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium sp. SM-530-WT-3G
NCBI: GCA_012843905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.70	no
125439	motility	BacteriaNetⓘ	yes	74.00	no
125439	gram_stain	BacteriaNetⓘ	positive	85.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. SM-530-WT-3G
PATRIC: 2725303.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.62	no
125438	anaerobic	anaerobicⓘ	yes	89.94	no
125438	spore-forming	spore-formingⓘ	yes	74.35	no
125438	aerobic	aerobicⓘ	no	97.55	no
125438	thermophilic	thermophileⓘ	no	86.50	no
125438	flagellated	motile2+ⓘ	yes	72.90	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65739	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107452
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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