Cite this strain

Clostridium sp. (DSM 12136, C1)

Name: Clostridium sp. (DSM 12136, C1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2629

Type strain

Strain Designation C1

Culture col. no. DSM 12136 C1

NCBI tax ID(s) 1506

Special Collections DSMZ

History <- E. R. Leadbetter, Univ. Connecticut, Storrs campus; C1 (Clostridium pasteurianum) <- C.-C. Chien; {1991}

Links

C1 is an anaerobe, mesophilic prokaryote that was isolated from soil.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 49238

DSM 12136

@ref 20215

Last LPSN update 2026-02-09 11:18:19

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Full scientific name Clostridium Prazmowski 1880 (Approved Lists 1980)

Synonyms (8)

Thomasclavelia
"Erysipelatoclostridium"
"Pseudoclostridium"
"Andreesenella"
"Tyzzerella"
"Lachnoclostridium"
Anaerobacter
"Inflabilis"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4612	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4612	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4612	anaerobe
125439	anaerobe	98.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4612	soil	Univ. of Connecticut	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4612	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1822362v1 assembly for Clostridium sp. C1	complete	GCA_018223625	1155388.3	1155388	92.72

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium sp. C1
PATRIC: 1155388.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.60	no
125439	gram_stain	BacteriaNetⓘ	positive	88.30	no
125439	motility	BacteriaNetⓘ	yes	54.30	no
125439	spore_formation	BacteriaNetⓘ	no	54.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. C1 C1
NCBI: GCA_018223625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.47	no
125438	anaerobic	anaerobicⓘ	yes	88.39	yes
125438	aerobic	aerobicⓘ	no	98.97	yes
125438	spore-forming	spore-formingⓘ	no	56.55	no
125438	thermophilic	thermophileⓘ	no	93.84	yes
125438	flagellated	motile2+ⓘ	no	87.59	no

Literature

References

#4612	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12136
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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