Enterocloster citroniae (DSM 6877, FS41)

Name: Enterocloster citroniae (DSM 6877, FS41)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2684

Type strain

Strain Designation FS41

Culture col. no. DSM 6877 FS41

NCBI tax ID(s) 358743

Special Collections DSMZ

Enterocloster citroniae FS41 is an anaerobe, mesophilic prokaryote that was isolated from sewage sludge.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

DSM 6877 FS41

@ref 20215

Last LPSN update 2025-12-16 09:47:22

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Enterocloster

Species Enterocloster citroniae

Full scientific name Enterocloster citroniae (Warren et al. 2007) Haas and Blanchard 2020

Synonyms (1)

Clostridium citroniae

BacDive ID	Other strains from **Enterocloster citroniae** (2)	Type strain
2843	E. citroniae DSM 19261, CCUG 52203, RMA 16102, ATCC BAA-1317 (type strain)
159538	E. citroniae H2_21, DSM 108162

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2869	TISSIERELLA SP. MEDIUM (CREATININE) (DSMZ Medium 557)		Medium recipe at MediaDive	Name: TISSIERELLA SP. MEDIUM (CREATININE) (DSMZ Medium 557) Composition: Creatinine 5.48355 g/l K2HPO4 5.31406 g/l Yeast extract 4.98504 g/l KH2PO4 2.6321 g/l NaHCO3 0.997009 g/l NaCl 0.997009 g/l MgSO4 x 7 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l Na2S x 9 H2O 0.498504 g/l CaSO4 x 2 H2O 0.0498504 g/l FeSO4 x 7 H2O 0.00997009 g/l Na2-EDTA x 2 H2O 0.00518445 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Nicotinic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2869	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
2869	anaerobe
125439	anaerobe	99.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Sewage sludge

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
2869	sewage sludge	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2869	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM95401v1 assembly for Clostridium sp. FS41	contig	GCA_000954015	1609975.3	2603880195	1609975	58.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Clostridium sp. DSM 6877 (FS 41) 16S rRNA gene	X76747	1484		1506

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium sp. FS41
NCBI: GCA_000954015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	79.50	no
125439	motility	BacteriaNetⓘ	yes	78.20	no
125439	gram_stain	BacteriaNetⓘ	positive	68.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. FS41
PATRIC: 1609975.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	61.26	no
125438	anaerobic	anaerobicⓘ	yes	86.92	yes
125438	spore-forming	spore-formingⓘ	yes	71.23	no
125438	aerobic	aerobicⓘ	no	94.50	yes
125438	thermophilic	thermophileⓘ	no	94.13	yes
125438	flagellated	motile2+ⓘ	yes	65.47	no

Literature

Title	Authors	Journal	DOI	Year
First Insights into the Genome of the N-Methylhydantoin-Degrading Clostridium sp. Strain FS41 (DSM 6877).	Poehlein A, Bandera A, Horne D, Maier J, Pawlowicz D, Siebert V, Daniel R	Genome Announc	10.1128/genomeA.00394-15	2015

References

#2869	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6877
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Enterocloster citroniae (DSM 6877, FS41)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000954015

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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