Name: Clostridium perfringens JCM 3817
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164823

Type strain:

Species: Clostridium perfringens

Culture col. no.: JCM 3817, ATCC 3626, BCRC 10647, LMG 10468, NCIMB 10691

Strain history: ATCC 3626 <-- I. C. Hall.

NCBI tax ID(s): 1502 (species)

SI-ID 1961

LMG 10468, ATCC 3626, NCIMB 10691, NCIB 10691, JCM 3817, CCRC 10647, BCRC 10647, VTT E-94526

Special Collections

Other strains from Clostridium perfringens

Section

Clostridium perfringens JCM 3817 is an anaerobe, spore-forming, Gram-positive bacterium that produces toxins and was isolated from Intestinal contents of lamb.

toxin production
Gram-positive
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium perfringens**
	Full Scientific Name (LPSN)	Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

Synonym

"Bacillus perfringens"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]	Name of produced compound	haemolysins
[Ref.: #67770]	Name of produced compound	lethal toxins

	Enzymes	Enzyme	EC number
[Ref.: #67770]		phospholipase C	3.1.4.11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Intestinal contents of lamb
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB588015 (>99% sequence identity) for Clostridium perfringens subclade from Microbeatlas

Aquatic Samples	8762
Soil Samples	3063
Animal Samples	75654
Plant Samples	847
Total Samples	88326

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium perfringens gene for 16S ribosomal RNA, partial sequence, strain: JCM 3817	AB588015	1474	GenBank ENA	1502 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clostridium perfringens B str. ATCC 3626	GCA_000171155	contig	GenBank ENA	451754 tax ID
[Ref.: #66792]	Clostridium perfringens B str. ATCC 3626	451754.5	wgs	PATRIC	451754 tax ID	*
[Ref.: #66792]	Clostridium perfringens type B - ATCC 3626	641736146	draft	JGI IMG/M	451754 tax ID	*
[Ref.: #66792]	Clostridium perfringens B ATCC 3626	GCA_029393235	complete	GenBank ENA	451751 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium perfringens B ATCC 3626 NCBI: GCA_029393235.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	75.562	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.956	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	91.366	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	74.878	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.063	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	66.179	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 3817, ATCC 3626, BCRC 10647, LMG 10468, NCIMB 10691

[Ref.: #114253]

SI-ID 1961

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Cloning and expression in Escherichia coli of an azoreductase gene from Clostridium perfringens and comparison with azoreductase genes from other bacteria.	Rafii F, Coleman T	J Basic Microbiol	10.1002/(SICI)1521-4028(199903)39:1<29::AID-JOBM29>3.0.CO;2-W	1999	*
Metabolism	Isolation of nitrofurantoin-resistant mutants of nitroreductase-producing Clostridium sp. strains from the human intestinal tract.	Rafii F, Hansen EB Jr	Antimicrob Agents Chemother	10.1128/AAC.42.5.1121	1998	*
Pathogenicity	Effect of fluoroquinolone resistance selection on the fitness of three strains of Clostridium perfringens.	Park M, Sutherland JB, Kim JN, Rafii F	Microb Drug Resist	10.1089/mdr.2013.0056	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114253

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1961.1 )

* These data were automatically processed and therefore are not curated

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Clostridium perfringens B ATCC 3626

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