Clostridium perfringens (DSM 756, ATCC 13124, ATCC 19408)

Name: Clostridium perfringens (DSM 756, ATCC 13124, ATCC 19408)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2631

Type strain

Strain Designation S107

Culture col. no. DSM 756 ATCC 13124 ATCC 19408 NCIB 6125 NCTC 6125 12 more

NCBI tax ID(s) 195103 1502

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- NCIB; NCIB 6125 <- NCTC; NCTC 8237 <- D. McClean; <- H. J. Schmidt, Univ. Marburg; S107 (Clostridium welchii) JCM <-- ATCC 13124 <-- NCTC 8237 ("Clostridium welchii") <-- Wellcome Lab.; CN 1491.

Links

Clostridium perfringens S107 is an anaerobe human pathogen that produces toxins and was isolated from bovine.

toxin production anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 289341

LMG 11264,ATCC 13124,ATCC 19408,CCM 5744,CCUG 1795,CECT 376,JCM 1290,NCIB 6125,NCTC 6125,NCTC 8237,NBIMCC 8615,CIP 103409,CCRC 10913,NCIMB 6125,CCM 4435,LMD 89.165,NCAIM B.01417,KCTC 3269,KCTC 5014,NCCB 89165,NCCB 92046,LMD 92.46,BCRC 10913,CCT 1445,NRRL B-23962,NCIM 2677,ACM 5198,CNCTC 5467,VTT E-98861,DSM 756

@ref 20215

Last LPSN update 2026-05-29 08:25:31

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium perfringens

Full scientific name Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

Synonyms (2)

"Clostridioides perfringens"
"Bacillus perfringens"

BacDive ID	Other strains from **Clostridium perfringens** (104)	Type strain
130925	C. perfringens D10, DSM 100947, NCTC 13170, WDCM 00201, ...
130924	C. perfringens MJJ0609-4-1, DSM 29991
2630	C. perfringens SM19b, DSM 628
2632	C. perfringens McClung 1988, BP6K, CCUG 35750, CIP 104612, ...
2633	C. perfringens DSM 2943, ATCC 25768, NCIB 10620
2634	C. perfringens C5, DSM 11778
2635	C. perfringens C8, DSM 11779
2636	C. perfringens C12, DSM 11780
2637	C. perfringens C33, DSM 11781
2638	C. perfringens C36, DSM 11782
2639	C. perfringens C42, DSM 11783
2640	C. perfringens 8239, C103, DSM 11784
2641	C. perfringens C186, DSM 11785
2642	C. perfringens C192, DSM 11786
2643	C. perfringens ES-MS 22, DSM 30770
2644	C. perfringens DSM 25589, VPI No.5
134383	C. perfringens 252, CIP 60.61
134433	C. perfringens 319.2000, CIP 106951
134565	C. perfringens CWC245, CIP 106464
134571	C. perfringens 3702/49, CIP 106516, ATCC 12915, NCTC 8359
134582	C. perfringens 132, CIP 106640
134596	C. perfringens 2882000, CIP 106939
134597	C. perfringens 4552000, CIP 106940
134598	C. perfringens 3232000, CIP 106942
134599	C. perfringens 3462000, CIP 106943
134627	C. perfringens 77.2000, CIP 106526
135320	C. perfringens CIP 60.19
135625	C. perfringens 2622 A, CIP 61.5
135929	C. perfringens 167/51, CIP 106515, ATCC 12919, NCTC 8678, ...
135938	C. perfringens 150, CIP 106894
135939	C. perfringens 3172000, CIP 106941
136396	C. perfringens CIP 105178
136465	C. perfringens CIP 105956, AIP 667-76
136487	C. perfringens CIP 106156, ATCC 27324, NCIMB 10748, CCUG ...
136536	C. perfringens 72.2000, CIP 106525
136541	C. perfringens C2823, CIP 106633
136547	C. perfringens 48899, CIP 106677
136548	C. perfringens 169, CIP 106904
136555	C. perfringens 3222000, CIP 106937
136563	C. perfringens 170, CIP 106903
136568	C. perfringens 3162000, CIP 106936
136569	C. perfringens 4692000, CIP 106944
136570	C. perfringens 72.2000, CIP 106946
137054	C. perfringens 117, CIP 106902
137142	C. perfringens CIP 60.60
137328	C. perfringens 2001036, CIP 106952
137329	C. perfringens 2001038, CIP 106953
138119	C. perfringens CIP 104880, ATCC 12917, NCTC 8239, CCUG 18370
138359	C. perfringens CWC238, CIP 106527
138373	C. perfringens 100, CIP 106888
138374	C. perfringens 101, CIP 106889
138375	C. perfringens 108, CIP 106890
138376	C. perfringens 124, CIP 106891
138377	C. perfringens 138, CIP 106892
138378	C. perfringens 146, CIP 106893
138384	C. perfringens 106, CIP 106901
138473	C. perfringens CIP 105568
138597	C. perfringens 4702000, CIP 106938
139291	C. perfringens CIP 106157, NCTC 8798, AIP 10201
139525	C. perfringens 281/50, CIP 110283, CCM 7176, ATCC 12916, ...
141458	C. perfringens CCUG 2035, NCTC 3110
141459	C. perfringens CCUG 2036, NCTC 3180, CECT 820
141460	C. perfringens CCUG 2037, NCTC 8346, CECT 821
141461	C. perfringens CCUG 2038, CECT 4110, ATCC 9856, NCTC 6719
141763	C. perfringens CCUG 6513, NCTC 11144
143263	C. perfringens CCUG 18108
144106	C. perfringens CCUG 23083
146487	C. perfringens CCUG 31304
147279	C. perfringens CCUG 33277
147489	C. perfringens CCUG 33691
147722	C. perfringens CCUG 34085
147747	C. perfringens CCUG 34138
147970	C. perfringens CCUG 34598
147979	C. perfringens CCUG 34613
148253	C. perfringens CCUG 35110
148543	C. perfringens CCUG 35619
148944	C. perfringens CCUG 36620
148995	C. perfringens CCUG 36694
149024	C. perfringens CCUG 36741
149315	C. perfringens CCUG 37480
149354	C. perfringens CCUG 37568
149572	C. perfringens CCUG 37991
150006	C. perfringens CCUG 38829
150123	C. perfringens CCUG 39042
150183	C. perfringens CCUG 39212
150282	C. perfringens CCUG 39490
150576	C. perfringens CCUG 41642
150859	C. perfringens CCUG 42581 A
150860	C. perfringens CCUG 42581 B
150893	C. perfringens CCUG 42642
150905	C. perfringens CCUG 42684
151036	C. perfringens CCUG 43122
151270	C. perfringens CCUG 43593
152132	C. perfringens CCUG 45870
152872	C. perfringens CCUG 47829
152887	C. perfringens CCUG 47895
154898	C. perfringens CCUG 55613
155386	C. perfringens CCUG 57575
156004	C. perfringens CCUG 59984
158915	C. perfringens WCA-h-251-APC-2, DSM 106278
164822	C. perfringens JCM 3816, ATCC 3624, BCRC 13019
164823	C. perfringens JCM 3817, ATCC 3626, BCRC 10647, LMG 10468, ...
164824	C. perfringens JCM 3818, ATCC 3628, NCIMB 10662
164825	C. perfringens JCM 3819, ATCC 3629, BCRC 10914, NCIMB 10663

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
428	CHOPPED MEAT MEDIUM (DSMZ Medium 78)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 487.805 g/l Casitone 29.2683 g/l Agar 14.6341 g/l K2HPO4 4.87805 g/l Yeast extract 4.87805 g/l L-Cysteine HCl 0.487805 g/l Ethanol 0.185366 g/l Haemin 0.00487805 g/l Resazurin 0.00097561 g/l Vitamin K3 0.000487805 g/l Vitamin K1 NaOH Distilled water Water
428	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
428	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)	Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water
42056	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)

Culture temp

@ref	Growth	Type	Temperature (°C)
428	positive	growth	37
42056	positive	growth	37
44424	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
428	anaerobe
44424	anaerobe
125439	facultative anaerobe	98.826

Compound production

@ref	Compound
428	haemolysins
428	lecithinase
428	lethal toxins
428	phospholipase C
67770	haemolysins
67770	lethal toxins

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68367	17057 ChEBI	cellobiose	-	builds acid from	from API 20A
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	-	builds acid from	from API 20A
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	+	hydrolysis	from API 20A
68367	30849 ChEBI	L-arabinose	-	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68367	62345 ChEBI	L-rhamnose	-	builds acid from	from API 20A
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	+	reduction	from API rID32A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	-	builds acid from	from API 20A
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
68367	17992 ChEBI	sucrose	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	+	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68367	gelatinase	+		from API 20A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
67770	phospholipase C		3.1.4.11
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
428	-	-	+	-	+	+	+	-	-	-	+	+	-	-	+	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
428	-	-	+	+/-	+	+	+	-	-	-	+	+	+	-	+	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	+	+	+	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)

Isolation

@ref	Sample type
428	bovine
44424	Bovine
67770	Bovine

Taxonmaps

69479

Global distribution of 16S sequence AB573713 (>99% sequence identity) for Clostridium perfringens subclade from Microbeatlas

Aquatic Samples	8762
Soil Samples	3063
Animal Samples	75654
Plant Samples	847
Total Samples	88326

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
428			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1328v1 assembly for Clostridium perfringens ATCC 13124	complete	GCA_000013285	195103.10	637000077	195103	98.76
124043	ASM1602737v1 assembly for Clostridium perfringens FDAARGOS_903	complete	GCA_016027375	1502.1789	8122462554	1502	96.95

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Clostridium perfringens gene for 16S rRNA, partial sequence, strain: ATCC 13124	AB075767	1460	195103
20218	Clostridium perfringens partial 16S rRNA gene, strain ATCC 13124	FM207095	390	195103
20218	Clostridium perfringens strain DSM 756 16S ribosomal RNA gene, partial sequence	HQ012013	933	1502
20218	Clostridium perfringens 16S ribosomal RNA	M59103	1462	1502
20218	{16S/23S ribosomal DNA spacer region} [Clostridium perfringens, ATCC 13124, Genomic, 239 nt]	S51964	239	1502
67770	Clostridium perfringens gene for 16S ribosomal RNA, partial sequence, strain: JCM 1290	AB573713	1474	1502
124043	Clostridium perfringens genes for 16S rRNA, 16S-23S rRNA spacer region (rrn1), 23S rRNA, partial sequence.	AB040736	281	1502
124043	Clostridium perfringens genes for 16S rRNA, tRNA-Ala, tRNA-Ile, 23S rRNA, partial and complete sequence.	AB040737	514	1502
124043	Clostridium perfringens ATCC 13124 16S ribosomal RNA gene, partial sequence.	MN326666	1432	195103

GC content

@ref	GC-content (mol%)	Method
428	24.0
67770	24	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1328v1 assembly for Clostridium perfringens ATCC 13124
NCBI: GCA_000013285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.83	no
125439	gram_stain	BacteriaNetⓘ	positive	65.56	no
125439	motility	BacteriaNetⓘ	yes	81.04	no
125439	spore_formation	BacteriaNetⓘ	yes	87.45	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium perfringens ATCC 13124 ATCC 13124
NCBI: GCA_000013285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.64	no
125438	anaerobic	anaerobicⓘ	yes	85.43	yes
125438	aerobic	aerobicⓘ	no	90.80	yes
125438	spore-forming	spore-formingⓘ	yes	76.88	no
125438	thermophilic	thermophileⓘ	no	95.32	yes
125438	flagellated	motile2+ⓘ	no	66.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bioinformatics analysis of myelin-microbe interactions suggests multiple types of molecular mimicry in the pathogenesis of multiple sclerosis.	Bigdeli A, Ghaderi-Zefrehei M, Lesch BJ, Behmanesh M, Arab SS.	PLoS One	10.1371/journal.pone.0308817	2024
	Phenotypic and Genotypic Characterization of C. perfringens Isolates from Dairy Cows with a Pathological Puerperium.	Kronfeld H, Kemper N, Holzel CS.	Vet Sci	10.3390/vetsci9040173	2022
	Enhancement of Textural and Sensory Characteristics of Wheat Bread Using a Chickpea Sourdough Fermented with a Selected Autochthonous Microorganism.	Nouska C, Hatzikamari M, Matsakidou A, Biliaderis CG, Lazaridou A.	Foods	10.3390/foods12163112	2023
	Proteome-Wide Mapping and Reverse Vaccinology Approaches to Design a Multi-Epitope Vaccine against Clostridium perfringens.	Aldakheel FM, Abrar A, Munir S, Aslam S, Allemailem KS, Khurshid M, Ashfaq UA.	Vaccines (Basel)	10.3390/vaccines9101079	2021
	Protective Effects of Novel Lactobacillaceae Strains Isolated from Chicken Caeca against Necrotic Enteritis Infection: In Vitro and In Vivo Evidences.	Vieco-Saiz N, Belguesmia Y, Raspoet R, Auclair E, Padgett C, Bailey C, Gancel F, Drider D.	Microorganisms	10.3390/microorganisms10010152	2022
	Effects of feed supplementation with 3 different probiotic Bacillus strains and their combination on the performance of broiler chickens challenged with Clostridium perfringens.	Sandvang D, Skjoet-Rasmussen L, Cantor MD, Mathis GF, Lumpkins BS, Blanch A.	Poult Sci	10.1016/j.psj.2021.01.005	2021
	Lactobacillus (Limosilactobacillus) reuteri: a probiotic candidate to reduce neonatal diarrhea in calves.	Schwaiger K, Storch J, Bauer C, Bauer J.	Front Microbiol	10.3389/fmicb.2023.1266905	2023
	Developing a genetic engineering method for Acetobacterium wieringae to expand one-carbon valorization pathways.	Moreira JPC, Heap JT, Alves JI, Domingues L.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02259-6	2023
	Administration of Bovine Milk Oligosaccharide to Weaning Gnotobiotic Mice Inoculated with a Simplified Infant Type Microbiota.	Jakobsen LMA, Sundekilde UK, Andersen HJ, Kot W, Mejia JLC, Nielsen DS, Hansen AK, Bertram HC.	Microorganisms	10.3390/microorganisms9051003	2021
	Factors that influence clinical efficacy of live biotherapeutic products.	Pot B, Vandenplas Y.	Eur J Med Res	10.1186/s40001-021-00509-7	2021
Enzymology	The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding.	Gomez S, Querol-Garcia J, Sanchez-Barron G, Subias M, Gonzalez-Alsina A, Franco-Hidalgo V, Alberti S, Rodriguez de Cordoba S, Fernandez FJ, Vega MC.	Front Microbiol	10.3389/fmicb.2019.00326	2019
Metabolism	Expanding the molecular toolkit for the homoacetogen Clostridium ljungdahlii.	Molitor B, Kirchner K, Henrich AW, Schmitz S, Rosenbaum MA.	Sci Rep	10.1038/srep31518	2016
Phylogeny	Application of denaturing high-performance liquid chromatography in microbial ecology: fermentor sludge, compost, and soil community profiling.	Wagner AO, Malin C, Illmer P.	Appl Environ Microbiol	10.1128/aem.01411-08	2009
Metabolism	Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly.	Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S.	Appl Environ Microbiol	10.1128/aem.01477-07	2007
	Demonstration of phage inhibitory action against Clostridium perfringens LMG 11264 within a complex chicken cecal microbiota in vitro.	Wiese M, Klaassens ES, Hatt V, Kreikamp A, Baak ML, Heerikhuisen M, Van Der Vossen JMBM.	Front Antibiot	10.3389/frabi.2025.1599939	2025
	Optimization of a loop-mediated isothermal amplification (lamp) assay for the rapid detection of Clostridium perfringens	Chaudhary D, Poudel S, Jia L, Sukumaran AT, Zhang X, Cheng WH, Kiess AS, Macklin KS, Zhang L.	Journal of applied poultry research.		2025
	Molecular identification of hyaluronate lyase, not hyaluronidase, as an intrinsic hyaluronan-degrading enzyme in Clostridium perfringens strain ATCC 13124.	Kumon T, Oiki S, Hashimoto W.	Sci Rep	10.1038/s41598-024-73955-y	2024
	Characterization of Clostridium perfringens Phage Endolysin PlyDolk21.	Seo S, Son B, Kong M.	Antibiotics (Basel)	10.3390/antibiotics14010081	2025
Genetics	Prevalence and toxin gene profiles of Clostridium perfringens in diarrheic dogs and cats in Korea: a retrospective analysis.	Park J, Cheon D, Oh YI.	J Vet Sci	10.4142/jvs.24361	2025
Pathogenicity	Isolation, toxin gene profiling, and phylogenetic analysis of Clostridium perfringens in Egyptian fruit bats: public health and epidemiological implications.	Allam TA, Abdel-Kader F, Kadry M.	Sci Rep	10.1038/s41598-025-26288-3	2025
	Bacillus amyloliquefaciens SC06 Ameliorated Intestinal Mucosal Injury by Regulated Intestinal Stem Cells Proliferation and Differentiation via Activating Wnt/beta-Catenin Signal Pathway in Clostridium perfringens-Challenged Mouse.	Deng H, Cheng S, Fan J, Hao H, Fang D, Li W, Wang Q.	Microorganisms	10.3390/microorganisms13092136	2025
Pathogenicity	Prevalence and antimicrobial resistance patterns of Clostridium perfringens from healthy broiler chickens: A potential public health threat	Ramatla T, Ncube S, Mokgokong P, Nkhebenyane J, Molale-Tom L, Ndou R, Khasapane N, Bezuidenhout C, Thekisoe O, Lekota K.	One Health		2025
	Novel multiplex PCR approach for the detection of Erysipelothrix rhusiopathiae, Streptococcus suis, and Staphylococcus hyicus in swine.	Milton AAP, Khan S, Srinivas K, Basar T, Hussain Z, Priya GB, Saminathan M, Puii LH, Ghatak S, Das S.	Front Vet Sci	10.3389/fvets.2025.1605316	2025
Genetics	Comparative genomic analysis of food-animal-derived and human-derived Clostridium perfringens isolates from markets in Shandong, China.	Zhu X, Huang Y, Shi Y, Gao X, Chen D, Liu C, Cao S, Xue X, Li Y.	Front Microbiol	10.3389/fmicb.2025.1543511	2025
Pathogenicity	The potential effect of gut microbiota on the secretion of selected cytokines by human cells in vitro.	Kopa-Stojak PN, Kleniewska P, Hoffmann A, Pawliczak R.	Sci Rep	10.1038/s41598-025-01581-3	2025
	Static and Dynamic Assessments of a Sulfur-Triglyceride Composite for Antimicrobial Surface Applications.	Wijeyatunga SK, Sauceda-Olono PY, Kapuge Dona NL, Guinati BGS, Derr KM, Tisdale KA, Smith AD, Tennyson AG, Smith RC.	Molecules	10.3390/molecules30071614	2025
	Metronidazole-Loaded Chitosan Nanoparticles with Antimicrobial Activity Against Clostridium perfringens.	Cadinoiu AN, Rata DM, Daraba OM, Atanase LI, Horhogea CE, Chailan JF, Popa M, Carauleanu A.	Pharmaceutics	10.3390/pharmaceutics17030294	2025
	Structural and molecular basis for phosphate recognition by SAR11 bacteria.	Zhu W-J, Wang C, Liu L, Li J-X, Wang H-Q, Wang M-Q, Cao H-Y, Chen X-L, Qin Q-L, Zhang Y-Z, Sun M-L, Wang P.	mBio	10.1128/mbio.01654-25	2025
Genetics	Genomic Insights into Virulence Factors and Multi-Drug Resistance in Clostridium perfringens IRMC2505A.	AlJindan R, AlEraky DM, Farhat M, Almandil NB, AbdulAzeez S, Borgio JF.	Toxins (Basel)	10.3390/toxins15060359	2023
	Vaccination with a novel quadrivalent fusion protein protects chickens against necrotic enteritis lesions caused by Clostridium perfringens.	Manohar MM, Campbell BE, Keyburn AL, Walduck AK, Moore RJ.	Poult Sci	10.1016/j.psj.2025.105936	2025
	Antimicrobial Susceptibility and Toxin Gene Profiles of Commensal Clostridium perfringens Isolates from Turkeys in Hungarian Poultry Farms (2022-2023).	Kerek A, Szabo A, Barnacz F, Csirmaz B, Kovacs L, Jerzsele A.	Antibiotics (Basel)	10.3390/antibiotics14040413	2025
	Volatiles extracted from Melaleuca Rugulosa (Link) Craven leaves: comparative profiling, bioactivity screening, and metabolomic analysis.	Mady MS, Elsayed HE, Tawfik NF, Moharram FA.	BMC Complement Med Ther	10.1186/s12906-024-04683-z	2024
	Purification and characterization of a novel antibacterial peptide against Clostridium perfringens.	Novodvorski A, Kong A, Yu H, Lepp D, Brott A, Carere J, Seah S, Gong J.	Microbiology (Reading)	10.1099/mic.0.001573	2025
	The Impact of Allicin on the Growth of Clostridium spp. in the Digestive Track of Quails.	Makuch A, Ziomek M, Sapala M, Drabik K, Batkowska J, Domaradzki P, Patyra E, Grenda T.	Animals (Basel)	10.3390/ani15070906	2025
	Ex vivo pharmacokinetic/pharmacodynamic of hexahydrocolupulone against Clostridium perfringens in broiler chickens.	Zhang W, Lu Y, Ma M, Yang J, Huang H, Peng X, Zeng Z, Zeng D.	Front Vet Sci	10.3389/fvets.2024.1362292	2024
	Chemical analysis, antibacterial and anti-inflammatory effect of Achillea fragrantissima essential oil growing wild in Egypt.	Tawfik NF, El-Sayed N, Mahgoub S, Khazaal MT, Moharram FA.	BMC Complement Med Ther	10.1186/s12906-024-04633-9	2024
	Addressing Current Challenges in Poultry Meat Safety: Development of a Cultivation and Colony Hybridization Approach to Recover Enterotoxigenic Clostridium perfringens from Broiler Chicken Carcasses.	Kakese Mukosa R, Thibodeau A, Morris Fairbrother J, Theriault W, Gaucher ML.	Pathogens	10.3390/pathogens13010030	2023
	Cellulose Nanocrystal/Zinc Oxide Bio-Nanocomposite Activity on Planktonic and Biofilm Producing Pan Drug-Resistant Clostridium perfringens Isolated from Chickens and Turkeys.	Amin I, Abdelkhalek A, El-Demerdash AS, Pet I, Ahmadi M, Abd El-Aziz NK.	Antibiotics (Basel)	10.3390/antibiotics14060575	2025
Genetics	Isolation of a Virulent Clostridium perfringens Strain from Elaphurus davidianus and Characterization by Whole-Genome Sequence Analysis.	Zhang Z, Wang X, Li S, Fu Y, Li Y, Nawaz S, Chen J, Yang G, Li J, Shi D.	Curr Issues Mol Biol	10.3390/cimb46070427	2024
	Comparing the efficacy of two antibiotic cocktails in decontamination of cardiovascular tissues.	Levy A, Cohen H, Savieva N, Neeman-Azulay M, Belausov N, Raanani E, Mishali D, Kornhaber R, Cleary M, Esensten J, Amit S, Di Segni A.	Cell Tissue Bank	10.1007/s10561-025-10198-9	2025
	Antimicrobial susceptibility profiles of commensal Clostridium perfringens isolates from chickens in Hungarian poultry farms between 2022 and 2023	Kerek A, Szabo A, Barnacz F, Csirmaz B, Kovacs L, Jerzsele A.	Front Vet Sci		2025
	Identifying DNA methylation types and methylated base positions from bacteria using nanopore sequencing with multi-scale neural network.	Chen Z, Ni P, Wang J.	Bioinformatics	10.1093/bioinformatics/btaf397	2025
	Characterization of thermostable bacteriophage CPD2 and its endolysin LysCPD2 as biocontrol agents against Clostridium perfringens.	Shin D, Ha E, Kong M, Ryu S.	Food Sci Biotechnol	10.1007/s10068-023-01314-0	2023
	Antimicrobial Activity of Synthetic Enterocins A, B, P, SEK4, and L50, Alone and in Combinations, against Clostridium perfringens.	Garcia-Vela S, Guay LD, Rahman MRT, Biron E, Torres C, Fliss I.	Int J Mol Sci	10.3390/ijms25031597	2024
	Influence of Emulsifying Salts on the Growth of Bacillus thuringiensis CFBP 3476 and Clostridium perfringens ATCC 13124 in Processed Cheese.	Fusieger A, da Silva RR, Cavicchioli VQ, Rodrigues RDS, Honorato JA, de Jesus Silva SR, Pena ML, Caggia C, Nero LA, de Carvalho AF.	Foods	10.3390/foods11203217	2022
	Genome MLST scheme for tracing genetic diversity and multidrug resistance of food animal-derived Clostridium perfringens.	Wu L, Yu Z, Li P, Wang Z, Li Q, Bao H, Garcia P, Letarov A, Zhou Y, Zhang H.	Curr Res Food Sci	10.1016/j.crfs.2025.101149	2025
	A Broad-Spectrum Phage Endolysin (LysCP28) Able to Remove Biofilms and Inactivate Clostridium perfringens Strains.	Lu R, Liu B, Wu L, Bao H, Garcia P, Wang Y, Zhou Y, Zhang H.	Foods	10.3390/foods12020411	2023
	Integrated multi-omics reveals the Bacillus amyloliquefaciens BA40 against Clostridium perfringens infection in weaned piglets.	Jiang Z, Su W, Yang M, Fu J, Gong T, Li W, Wen C, Wang X, Wang F, Jin M, Wang Y, Lu Z.	J Adv Res	10.1016/j.jare.2025.01.033	2025
	Unlocking the Antioxidant, Enzyme Inhibitory and Acaricidal Potential of Azadirachta indica Phytoconstituents Using In Vitro and In Silico Approaches	Fatima T, Abbas M, Zafar K, Zafar M, Haider W, Zafar M, Riaz M, Iqbal M, Mtewa A.	Food Sci Nutr		2025
	High intestinal carriage of Clostridium perfringens in healthy individuals and ICU patients in Hangzhou, China.	Yan Z, Fu B, Zhu Y, Zhang Y, Wu Y, Xiong P, Zhou H, Wang Y, Wang S, Chen G, Zhang R, Sun C.	Microbiol Spectr	10.1128/spectrum.03385-23	2024
	Clostridium perfringens sialidase interaction with Neu5Ac alpha-Gal sialic acid receptors by in-silico observation and its impact on monolayers cellular behavior structure.	Kurnia RS, Soebandrio A, Harun VH, Nugroho CMH, Krisnamurti DGB, Poetri ON, Indrawati A, Tarigan S, Natih KKN, Ibrahim F, Sudarmono PP, Silaen OSM.	J Adv Vet Anim Res	10.5455/javar.2023.j722	2023
	Characterization of Serratia marcescens (OK482790)' prodigiosin along with in vitro and in silico validation for its medicinal bioactivities.	Hamada MA, Mohamed ET.	BMC Microbiol	10.1186/s12866-024-03634-5	2024
	Identification of a new Clostridium perfringens variant with a chromosomally encoded enterotoxin gene in a suspected persistent food poisoning outbreak in Eritrea.	Lahti P, Jaakkola K, Horman A, Heikinheimo A, Sovijarvi A, Korkeala H.	Front Microbiol	10.3389/fmicb.2024.1459840	2024
	Molecular characteristics and phylogenetic analysis of Clostridium perfringens from different regions in China, from 2013 to 2021.	Zhong JX, Zheng HR, Wang YY, Bai LL, Du XL, Wu Y, Lu JX.	Front Microbiol	10.3389/fmicb.2023.1195083	2023
	Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens.	Huertas-Diaz L, Vestergaard LG, Marietou A, Irla M, Behr J, Somoza MM, Feilberg A, Schwab C.	Gut Pathog	10.1186/s13099-025-00689-1	2025
	Effects of genetically modified soybean on physiological variables and gut microbiota of Sprague-Dawley rats.	Ashrafi-Dehkordi E, Alborzi A, Pouladfar G, Abbasian SA, Mazloomi SM.	PLoS One	10.1371/journal.pone.0311443	2024
	REGECEL (an Oxidized Regenerated Cellulose) Provides Superior Bioactivity Effect on Microorganisms.	Alhetheel AF, Alrfaei BM, Mujamammi AH, Hakami JA, Alshuhri AA.	Infect Drug Resist	10.2147/idr.s454539	2024
	Intestinal Colonization by Campylobacter jejuni, Clostridium difficile, and Clostridium perfringens among Commensal Rattus norvegicus in the Urban Areas of Tehran, Iran.	Azimi T, Nasrollahian S, Sabour S, Mosadegh M, Hadi N, Azimi L, Fallah F, Pourmand MR.	Biomed Res Int	10.1155/2024/2929315	2024
	The potential immunomodulatory role of the gut microbiota in the pathogenesis of asthma: an in vitro study.	Kleniewska P, Kopa-Stojak PN, Hoffmann A, Pawliczak R.	Sci Rep	10.1038/s41598-023-47003-0	2023
	Antimicrobial, antiproliferative activities and molecular docking of metabolites from Alternaria alternata.	Khazaal HT, Khazaal MT, Abdel-Razek AS, Hamed AA, Ebrahim HY, Ibrahim RR, Bishr M, Mansour YE, El Dib RA, Soliman HSM.	AMB Express	10.1186/s13568-023-01568-1	2023
	Impact of pH and High-Pressure Pasteurization on the Germination and Development of Clostridium perfringens Spores under Hyperbaric Storage versus Refrigeration	Pinto C, Mousakhani Ganjeh A, Barba F, Saraiva J.	Foods		2024
Biotechnology	Phage Endolysins as an Alternative Biocontrol Strategy for Pathogenic and Spoilage Microorganisms in the Food Industry.	Soto Lopez ME, Mendoza-Corvis F, Salgado-Behaine JJ, Hernandez-Arteaga AM, Gonzalez-Pena V, Burgos-Rivero AM, Cortessi D, Vidigal PMP, Perez-Sierra O.	Viruses	10.3390/v17040564	2025
	Association of Bacillus subtilis and Bacillus amyloliquefaciens: minimizes the adverse effects of necrotic enteritis in the gastrointestinal tract and improves zootechnical performance in broiler chickens.	Rodrigues RA, Silva LAM, Brugnera HC, Pereira N, Casagrande MF, Makino LC, Braganca CRS, Schocken-Iturrino RP, Cardozo MV.	Poult Sci	10.1016/j.psj.2023.103394	2024
	Co-Culturing Bacillus Strains for Enhanced Antimicrobial Activity.	Tran C, Addison RS, Cock IE, Chen X, Feng Y.	Antibiotics (Basel)	10.3390/antibiotics14090908	2025
Genetics	Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads.	Konanov DN, Babenko VV, Belova AM, Madan AG, Boldyreva DI, Glushenko OE, Butenko IO, Fedorov DE, Manolov AI, Krivonos DV, Lazarev VN, Govorun VM, Ilina EN.	Bioinformatics	10.1093/bioinformatics/btad702	2023
	Simulated digestions of free oligosaccharides and mucin-type O-glycans reveal a potential role for Clostridium perfringens.	McDonald AG, Lisacek F.	Sci Rep	10.1038/s41598-023-51012-4	2024
	In vitro antibacterial effects of Broussonetia papyrifera leaf extract and its anti-colitis in DSS-treated mice.	Liang X, Ru M, Zhai Z, Huang J, Wang W, Wang R, Zhang Z, Niu KM, Wu X.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1255127	2023
	Short communication: a novel multispecies bacteria-based direct-fed microbial supports in vitro gut barrier integrity challenged with a pathogen or pro-inflammatory cytokines.	Boll EJ, Copani G, Cappellozza BI.	J Anim Sci	10.1093/jas/skae089	2024
Enzymology	In situ identifying sennoside A-reducing bacteria guilds in human gut microbiota via enzymatic activity visualization.	Zhai C, Liu X, Liu Z, Ma H, Li H, Gong Y, Li X, Wang Y, Zhang N, Zhang H, Luo G, Wang Y, Gao X.	Gut Microbes	10.1080/19490976.2025.2560598	2025
Phylogeny	Phylogenetic analyses of Candidatus Branchiomonas cysticola refine the taxonomic classification of Betaproteobacteria associated with epitheliocystis in fish.	Bysveen Mjolnerod E, Lagadec E, Nylund A.	Arch Microbiol	10.1007/s00203-023-03581-1	2023
	The Broad Host Range Phage vB_CpeS_BG3P Is Able to Inhibit Clostridium perfringens Growth.	Huang S, Tian Y, Wang Y, Garcia P, Liu B, Lu R, Wu L, Bao H, Pang M, Zhou Y, Wang R, Zhang H.	Viruses	10.3390/v14040676	2022
	High Prevalence of Multidrug-Resistant, Biofilm-Forming Virulent Clostridium perfringens in Broiler Chicken Retail Points in Northeast India.	Priya GB, Srinivas K, Shilla H, Milton AAP.	Foods	10.3390/foods12224185	2023
	Investigation of Trehalose Supplementation Impacting Campylobacter jejuni and Clostridium perfringens from Broiler Farming.	Fan YC, Wu YT, Wu YS, Wang CL, Chou CH, Chen YC, Tsai HJ.	Vet Sci	10.3390/vetsci10070466	2023
	Innovative Multiplex PCR Assay for Detection of tlh, trh, and tdh Genes in Vibrio parahaemolyticus with Reference to the U.S. FDA's Bacteriological Analytical Manual (BAM).	Park SB, Zhang Y.	Pathogens	10.3390/pathogens13090774	2024
	Battling Enteropathogenic Clostridia: Phage Therapy for Clostridioides difficile and Clostridium perfringens.	Venhorst J, van der Vossen JMBM, Agamennone V.	Front Microbiol	10.3389/fmicb.2022.891790	2022
	Exploring the predictive power of jejunal microbiome composition in clinical and subclinical necrotic enteritis caused by Clostridium perfringens: insights from a broiler chicken model.	Gautam H, Ayalew LE, Shaik NA, Subhasinghe I, Popowich S, Chow-Lockerbie B, Dixon A, Ahmed KA, Tikoo SK, Gomis S.	J Transl Med	10.1186/s12967-023-04728-w	2024
	A mixture of organic acids and thymol protects primary chicken intestinal epithelial cells from Clostridium perfringens infection in vitro.	Ghiselli F, Giovagnoni G, Felici M, Tugnoli B, Piva A, Grilli E.	Poult Sci	10.1016/j.psj.2022.102101	2022
	Characterization of Autochthonous Strains from the Cecal Content of Creole Roosters for a Potential Use as Probiotics.	Melara EG, Avellaneda MC, Rondon AJ, Rodriguez M, Valdivie M, Martinez Y.	Animals (Basel)	10.3390/ani13030455	2023
	A dual strain probiotic administered via the waterline beneficially modulates the ileal and cecal microbiome, sIgA and acute phase protein levels, and growth performance of broilers during a dysbacteriosis challenge.	van der Klein SAS, Arora SS, Haldar S, Dhara AK, Gibbs K.	Poult Sci	10.1016/j.psj.2024.104462	2024
Genetics	Determination of Genomic Epidemiology of Historical Clostridium perfringens Outbreaks in New York State by Use of Two Web-Based Platforms: National Center for Biotechnology Information Pathogen Detection and FDA GalaxyTrakr.	Carey J, Cole J, Venkata SLG, Hoyt H, Mingle L, Nicholas D, Musser KA, Wolfgang WJ.	J Clin Microbiol	10.1128/jcm.02200-20	2021
	Genome characteristics of the optrA-positive Clostridium perfringens strain QHY-2 carrying a novel plasmid type.	Wu K, Li Z, Fang M, Yuan Y, Fox EM, Liu Y, Li R, Bai L, Zhang W, Zhang WM, Yang Q, Chang L, Li P, Wang X, Wang J, Yang Z.	mSystems	10.1128/msystems.00535-23	2023
	Mechanistic and functional aspects of the Ruminococcin C sactipeptide isoforms.	Shamseddine L, Roblin C, Veyrier I, Basset C, De Macedo L, Boyeldieu A, Maresca M, Nicoletti C, Brasseur G, Kieffer-Jaquinod S, Courvoisier-Dezord E, Amouric A, Carpentier P, Campo N, Berge M, Polard P, Perrier J, Duarte V, Lafond M.	iScience	10.1016/j.isci.2023.107563	2023
	Comparative Genomics of Clostridium perfringens Reveals Patterns of Host-Associated Phylogenetic Clades and Virulence Factors.	Geier RR, Rehberger TG, Smith AH.	Front Microbiol	10.3389/fmicb.2021.649953	2021
	Plant-nanoparticles enhance anti-PD-L1 efficacy by shaping human commensal microbiota metabolites.	Teng Y, Luo C, Qiu X, Mu J, Sriwastva MK, Xu Q, Liu M, Hu X, Xu F, Zhang L, Park JW, Hwang JY, Kong M, Liu Z, Zhang X, Xu R, Yan J, Merchant ML, McClain CJ, Zhang HG.	Nat Commun	10.1038/s41467-025-56498-2	2025
Genetics	Establishment of a Publicly Available Core Genome Multilocus Sequence Typing Scheme for Clostridium perfringens.	Abdel-Glil MY, Thomas P, Linde J, Jolley KA, Harmsen D, Wieler LH, Neubauer H, Seyboldt C.	Microbiol Spectr	10.1128/spectrum.00533-21	2021
	Chemical and biological characterization of Melaleuca subulata (Cheel) Craven leaves' volatile constituents supported by chemometric analysis and molecular docking.	Elsayed HE, Ayoub IM, Mady MS, Moharram FA.	BMC Complement Med Ther	10.1186/s12906-024-04345-0	2024
	Exploring the sequence-function space of microbial fucosidases.	Martinez Gascuena A, Wu H, Wang R, Owen CD, Hernando PJ, Monaco S, Penner M, Xing K, Le Gall G, Gardner R, Ndeh D, Urbanowicz PA, Spencer DIR, Walsh M, Angulo J, Juge N.	Commun Chem	10.1038/s42004-024-01212-4	2024
	High-Value Brown Algae Extracts Using Deep Eutectic Solvents and Microwave-Assisted Extraction.	Jesus M, Romani A, Santos J, Pires P, Del-Rio P, Mata F, Fernandes E, Ramos C, Vaz-Velho M.	Foods	10.3390/foods14132280	2025
	Development of a novel polymerase spiral reaction (PSR) assay for rapid and visual detection of Clostridium perfringens in meat.	Milton AAP, Momin KM, Ghatak S, Priya GB, Angappan M, Das S, Puro K, Sanjukta RK, Shakuntala I, Sen A, Kandpal BK.	Heliyon	10.1016/j.heliyon.2021.e05941	2021
	The Pathogenicity of Fusobacterium nucleatum Modulated by Dietary Fibers-A Possible Missing Link between the Dietary Composition and the Risk of Colorectal Cancer.	Nawab S, Bao Q, Ji LH, Luo Q, Fu X, Fan S, Deng Z, Ma W.	Microorganisms	10.3390/microorganisms11082004	2023
	LysGR1, a novel thermostable endolysin from Geobacillus stearothermophilus bacteriophage GR1.	Choi D, Kong M.	Front Microbiol	10.3389/fmicb.2023.1178748	2023
	Biofilm and Spore Formation of Clostridium perfringens and Its Resistance to Disinfectant and Oxidative Stress.	Hu WS, Woo DU, Kang YJ, Koo OK.	Antibiotics (Basel)	10.3390/antibiotics10040396	2021
	Human-Derived collagen hydrogel as an antibiotic vehicle for topical treatment of bacterial biofilms.	Jarman E, Burgess J, Sharma A, Hayashigatani K, Singh A, Fox P.	PLoS One	10.1371/journal.pone.0303039	2024
	Polydextrose-driven gut microbiota modulation from synbiotic yogurt intake simulated in the in vitro dynamic multivessel colonic xGIbiomics system.	Pessotti RC, Salgaco M, Agostinho LL, de Freitas MN, Bogsan CSB, Guimaraes CRW, Sivieri K.	Front Nutr	10.3389/fnut.2025.1654738	2025
	Safety and efficacy evaluation of halicin as an effective drug for inhibiting intestinal infections.	Zhang M, Lin S, Han L, Zhang J, Liu S, Yang X, Wang R, Yang X, Yi Y.	Front Pharmacol	10.3389/fphar.2024.1389293	2024
Phylogeny	Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential.	Abdel-Glil MY, Thomas P, Linde J, Busch A, Wieler LH, Neubauer H, Seyboldt C.	Sci Rep	10.1038/s41598-021-86148-8	2021
	Pathogenicity and Antibiotic Resistance Diversity in Clostridium perfringens Isolates from Poultry Affected by Necrotic Enteritis in Canada.	Garcia-Vela S, Martinez-Sancho A, Said LB, Torres C, Fliss I.	Pathogens	10.3390/pathogens12070905	2023
Genetics	O-Mucin-degrading carbohydrate-active enzymes and their possible implication in inflammatory bowel diseases.	Labourel A, Parrou JL, Deraison C, Mercier-Bonin M, Lajus S, Potocki-Veronese G.	Essays Biochem	10.1042/ebc20220153	2023
	Intra-species diversity of Clostridium perfringens: A diverse genetic repertoire reveals its pathogenic potential.	Camargo A, Guerrero-Araya E, Castaneda S, Vega L, Cardenas-Alvarez MX, Rodriguez C, Paredes-Sabja D, Ramirez JD, Munoz M.	Front Microbiol	10.3389/fmicb.2022.952081	2022
Pathogenicity	Ligilactobacillus animalis 506 Protects the Intestinal Barrier from the Damaging Effects of Enteric Pathogens and Deoxynivalenol.	Boll EJ, Winther KD, Knudsen TTM, Copani G, Cappellozza BI.	Animals (Basel)	10.3390/ani14020269	2024
	Efficacy of Two Probiotic Products Fed Daily to Reduce Clostridium perfringens-Based Adverse Health and Performance Effects in Dairy Calves.	Cull C, Singu VK, Cull BJ, Lechtenberg KF, Amachawadi RG, Schutz JS, Bryan KA.	Antibiotics (Basel)	10.3390/antibiotics11111513	2022
	Effect of Porcine Clostridium perfringens on Intestinal Barrier, Immunity, and Quantitative Analysis of Intestinal Bacterial Communities in Mice.	Jiang Z, Su W, Wen C, Li W, Zhang Y, Gong T, Du S, Wang X, Lu Z, Jin M, Wang Y.	Front Vet Sci	10.3389/fvets.2022.881878	2022
	Mapping a sustainable approach: biosynthesis of lactobacilli-silver nanocomposites using whey-based medium for antimicrobial and bioactivity applications.	El Fadly EB, Salah AS, Abdella B, Al Ali A, AlShmrany H, ElBaz AM, Abdelatty NS, Khamis EF, Maagouz OF, Salamah MA, Saleh MN, Sakr HK, El-Kemary MA.	Microb Cell Fact	10.1186/s12934-024-02428-8	2024
Genetics	Comparative genomics of Clostridium butyricum reveals a conserved genome architecture and novel virulence-related gene clusters	Anderson O, Chong J, Thomas G.	Microb Genom		2025
	A New High-Efficiency Fertilization System from Waste Materials for Soil Protection: Material Engineering, Chemical-Physical Characterization, Antibacterial and Agronomic Performances	Napolitano M, Malavasi G, Malferrari D, Galamini G, Catauro M, Viola V, Marani F, Barbieri L.	Materials (Basel)		2025
Enzymology	Structure and function of microbial alpha-l-fucosidases: a mini review.	Wu H, Owen CD, Juge N.	Essays Biochem	10.1042/ebc20220158	2023
Pathogenicity	Selection of Candidate Monoclonal Antibodies for Therapy of Botulinum Toxin Type A Intoxications.	Zeninskaya NA, Ryabko AK, Marin MA, Kombarova TI, Shkuratova MA, Rogozin MM, Silkina MV, Romanenko YO, Ivashchenko TA, Shemyakin IG, Firstova VV.	Toxins (Basel)	10.3390/toxins16070284	2024
	Evaluation of candidate reference genes stability for gene expression analysis by reverse transcription qPCR in Clostridium perfringens.	Williams ML, Ghanem M.	Sci Rep	10.1038/s41598-022-23804-7	2022
	Prevalence, Antibiotic Resistance, Toxin-Typing and Genotyping of Clostridium perfringens in Raw Beef Meats Obtained from Qazvin City, Iran.	Hassani S, Pakbin B, Bruck WM, Mahmoudi R, Mousavi S.	Antibiotics (Basel)	10.3390/antibiotics11030340	2022
Genetics	Targeting Enterococci with Antimicrobial Activity against Clostridium perfringens from Poultry.	Garcia-Vela S, Ben Said L, Soltani S, Guerbaa R, Fernandez-Fernandez R, Ben Yahia H, Ben Slama K, Torres C, Fliss I.	Antibiotics (Basel)	10.3390/antibiotics12020231	2023
	Composition and function of the Galapagos penguin gut microbiome vary with age, location, and a putative bacterial pathogen.	Rohrer SD, Jimenez-Uzcategui G, Parker PG, Chubiz LM.	Sci Rep	10.1038/s41598-023-31826-y	2023
Enzymology	Two Clostridiumperfringens Type E Isolates in France.	Diancourt L, Sautereau J, Criscuolo A, Popoff MR.	Toxins (Basel)	10.3390/toxins11030138	2019
	Antibacterial and Antiviral Properties of Pinus densiflora Essential Oil.	Oh YJ, Kim YS, Kim JW, Kim DW.	Foods	10.3390/foods12234279	2023
	Wound Infection with Multi-Drug Resistant Clostridium Perfringens: A Case Study.	Khandia R, Puranik N, Bhargava D, Lodhi N, Gautam B, Dhama K.	Arch Razi Inst	10.22092/ari.2021.355985.1757	2021
	Competition and cooperation: The plasticity of bacterial interactions across environments.	Solowiej-Wedderburn J, Pentz JT, Lizana L, Schroeder BO, Lind PA, Libby E.	PLoS Comput Biol	10.1371/journal.pcbi.1013213	2025
	Validation of a Loop-Mediated Isothermal Amplification-Based Kit for the Detection of Legionella pneumophila in Environmental Samples According to ISO/TS 12869:2012.	Caruso G, Coniglio MA, Lagana P, Fasciana T, Arcoleo G, Arrigo I, Di Carlo P, Palermo M, Giammanco A.	Microorganisms	10.3390/microorganisms12050961	2024
	A GH89 human alpha-N-acetylglucosaminidase (hNAGLU) homologue from gut microbe Bacteroides thetaiotaomicron capable of hydrolyzing heparosan oligosaccharides.	Yang X, Yang X, Yu H, Na L, Ghosh T, McArthur JB, Chou TF, Dickson P, Chen X.	AMB Express	10.1186/s13568-021-01253-1	2021
	Antimicrobial Susceptibility and Association with Toxin Determinants in Clostridium perfringens Isolates from Chickens.	Wei B, Cha SY, Zhang JF, Shang K, Park HC, Kang J, Lee KJ, Kang M, Jang HK.	Microorganisms	10.3390/microorganisms8111825	2020
Metabolism	Prevotella copri alleviates diarrhea in weaning piglets through gut microbiota modulation and arachidonic acid-AHR-NRF2 pathway activation.	Lan C, Ren W, Wu A, Yu B, He J, Luo Y, Chen D.	J Anim Sci Biotechnol	10.1186/s40104-025-01273-y	2025
Pathogenicity	Clostridium Perfringens Spores in Polish Honey Samples.	Grenda T, Grabczak M, Goldsztejn M, Koziel N, Kwiatek K, Pohorecka K, Skubida M, Bober A.	J Vet Res	10.2478/jvetres-2018-0040	2018
Enzymology	Clostridium perfringens Virulent Bacteriophage CPS2 and Its Thermostable Endolysin LysCPS2.	Ha E, Son B, Ryu S.	Viruses	10.3390/v10050251	2018
	Two New 4-Hydroxy-2-pyridone Alkaloids with Antimicrobial and Cytotoxic Activities from Arthrinium sp. GZWMJZ-606 Endophytic with Houttuynia cordata Thunb.	Yin Y, Wang D, Wu D, He W, Zuo M, Zhu W, Xu Y, Wang L.	Molecules	10.3390/molecules28052192	2023
	Verbascoside Protects Mice From Clostridial Gas Gangrene by Inhibiting the Activity of Alpha Toxin and Perfringolysin O.	Zhang J, Liu S, Xia L, Wen Z, Hu N, Wang T, Deng X, He J, Wang J.	Front Microbiol	10.3389/fmicb.2020.01504	2020
	Bacillus amyloliquefaciens CECT 5940 alone or in combination with antibiotic growth promoters improves performance in broilers under enteric pathogen challenge.	de Oliveira MJK, Sakomura NK, de Paula Dorigam JC, Doranalli K, Soares L, Viana GDS.	Poult Sci	10.3382/ps/pez223	2019
Genetics	Comparative Genome Analysis and Spore Heat Resistance Assay Reveal a New Component to Population Structure and Genome Epidemiology Within Clostridium perfringens Enterotoxin-Carrying Isolates.	Jaakkola K, Virtanen K, Lahti P, Keto-Timonen R, Lindstrom M, Korkeala H.	Front Microbiol	10.3389/fmicb.2021.717176	2021
Genetics	Complete genome sequence of Clostridium perfringens CBA7123 isolated from a faecal sample from Korea.	Kim YB, Kim JY, Song HS, Lee C, Kwon J, Kang J, Rhee JK, Jeong MS, Nam YD, Roh SW.	Gut Pathog	10.1186/s13099-017-0181-1	2017
	Avian Macrophage Responses to Virulent and Avirulent Clostridium perfringens.	Kulkarni RR, Gaghan C, Mohammed J.	Pathogens	10.3390/pathogens11010100	2022
	Rapid and sensitive detection of methicillin-resistant Staphylococcus aureus through the RPA-PfAgo system.	Chen W, Zhang J, Wei H, Su J, Lin J, Liang X, Chen J, Zhou R, Li L, Lu Z, Sun G.	Front Microbiol	10.3389/fmicb.2024.1422574	2024
	GH20 and GH84 beta-N-acetylglucosaminidases with different linkage specificities underpin mucin O-glycan breakdown capability of Bifidobacterium bifidum.	Takada H, Katoh T, Sakanaka M, Odamaki T, Katayama T.	J Biol Chem	10.1016/j.jbc.2023.104781	2023
	Relationship between cariogenic bacteria and molar incisor hypomineralization in Brazilian schoolchildren.	Rizzardi KF, Rizzardi RF, Crescente CL, Tognetti VM, de Sousa ET, Parisotto TM.	Transl Pediatr	10.21037/tp-23-48	2023
	Emergence of Antibiotic-Resistant Porphyromonas gingivalis in United States Periodontitis Patients.	Rams TE, Sautter JD, van Winkelhoff AJ.	Antibiotics (Basel)	10.3390/antibiotics12111584	2023
Pathogenicity	Oral Multiple Sclerosis Drugs Inhibit the In vitro Growth of Epsilon Toxin Producing Gut Bacterium, Clostridium perfringens.	Rumah KR, Vartanian TK, Fischetti VA.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00011	2017
	Complete Genome Sequence of Clostridium perfringens LLY_N11, a Necrotic Enteritis-Inducing Strain Isolated from a Healthy Chicken Intestine.	Li C, Yan X, Lillehoj HS.	Genome Announc	10.1128/genomea.01225-17	2017
	Recent development and fighting strategies for lincosamide antibiotic resistance.	Yang Y, Xie S, He F, Xu Y, Wang Z, Ihsan A, Wang X.	Clin Microbiol Rev	10.1128/cmr.00161-23	2024
	Changes in the fecal microbiota in dogs with acute hemorrhagic diarrhea during an outbreak in Norway.	Herstad KMV, Trosvik P, Haaland AH, Haverkamp THA, de Muinck EJ, Skancke E.	J Vet Intern Med	10.1111/jvim.16201	2021
Phylogeny	The First Identification and Antibiogram of Clostridium perfringens Type C Isolated from Soil and The Feces of Dead Foals in South Korea.	Park CS, Hwang JY, Cho GJ.	Animals (Basel)	10.3390/ani9080579	2019
	Molecular Characterization of Clostridium perfringens Strains Isolated in Italy.	Forti K, Ferroni L, Pellegrini M, Cruciani D, De Giuseppe A, Crotti S, Papa P, Maresca C, Severi G, Marenzoni ML, Cagiola M.	Toxins (Basel)	10.3390/toxins12100650	2020
	Protective Effects of Bacillus amyloliquefaciens 40 Against Clostridium perfringens Infection in Mice.	Jiang Z, Li W, Su W, Wen C, Gong T, Zhang Y, Wang Y, Jin M, Lu Z.	Front Nutr	10.3389/fnut.2021.733591	2021
	Prevalence and Genetic Diversity of Clostridium perfringens Isolates in Hospitalized Diarrheal Patients from Central China.	Wang B, Dong W, Ma L, Dong Y, Wang S, Yuan Y, Ma Q, Xu J, Yan W, Nan J, Zhang Q, Xu W, Ma B, Chu Y, Zhang J, Li L, Li Y.	Infect Drug Resist	10.2147/idr.s338593	2021
	Clove Polyphenolic Compounds Improve the Microbiological Status, Lipid Stability, and Sensory Attributes of Beef Burgers during Cold Storage.	Ahmed IAM, Babiker EE, Al-Juhaimi FY, Bekhit AEA.	Antioxidants (Basel)	10.3390/antiox11071354	2022
Metabolism	Protective Effects of Lactobacillus plantarum Lac16 on Clostridium perfringens Infection-Associated Injury in IPEC-J2 Cells.	Zhou Y, Wang B, Wang Q, Tang L, Zou P, Zeng Z, Zhang H, Gong L, Li W.	Int J Mol Sci	10.3390/ijms222212388	2021
	Complete Genome Sequence of Clostridium cadaveris IFB3C5, Isolated from a Human Colonic Adenocarcinoma.	McGlinchey AS, Zepeda-Rivera MA, Stepanovica M, Baryiames AA, Jones DS, LaCourse KD, Bullman S, Johnston CD.	Microbiol Resour Announc	10.1128/mra.01135-21	2022
Enzymology	Structural and functional analysis of four family 84 glycoside hydrolases from the opportunistic pathogen Clostridium perfringens.	Pluvinage B, Massel PM, Burak K, Boraston AB.	Glycobiology	10.1093/glycob/cwz069	2019
	Antibacterial and antifungal activities of natural deep eutectic solvents.	Bedair HM, Samir TM, Mansour FR.	Appl Microbiol Biotechnol	10.1007/s00253-024-13044-2	2024
Pathogenicity	Berberine ameliorates chronic kidney disease through inhibiting the production of gut-derived uremic toxins in the gut microbiota.	Pan L, Yu H, Fu J, Hu J, Xu H, Zhang Z, Bu M, Yang X, Zhang H, Lu J, Jiang J, Wang Y.	Acta Pharm Sin B	10.1016/j.apsb.2022.12.010	2023
	Metabolic Effects of Bovine Milk Oligosaccharides on Selected Commensals of the Infant Microbiome-Commensalism and Postbiotic Effects.	Jakobsen LMA, Maldonado-Gomez MX, Sundekilde UK, Andersen HJ, Nielsen DS, Bertram HC.	Metabolites	10.3390/metabo10040167	2020
	Adhesion and invasion of Clostridium perfringens type A into epithelial cells.	Llanco LA, Nakano V, Moraes CTP, Piazza RMF, Avila-Campos MJ.	Braz J Microbiol	10.1016/j.bjm.2017.06.002	2017
	Saccharomyces boulardii attenuates inflammatory response induced by Clostridium perfringens via TLR4/TLR15-MyD8 pathway in HD11 avian macrophages.	Wang B, Hussain A, Zhou Y, Zeng Z, Wang Q, Zou P, Gong L, Zhao P, Li W.	Poult Sci	10.1016/j.psj.2020.07.045	2020
	A Computational Framework for Studying Gut-Brain Axis in Autism Spectrum Disorder.	Mohammad FK, Palukuri MV, Shivakumar S, Rengaswamy R, Sahoo S.	Front Physiol	10.3389/fphys.2022.760753	2022
Genetics	Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.	Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.	Microbiome	10.1186/s40168-016-0221-y	2017
Genetics	'Clostridium mediterraneense,' a new bacterial species isolated from the human gut.	Ndongo S, Cassir N, Delerce J, Raoult D, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2017.09.001	2017
	Tryptanthrin Reduces Campylobacter jejuni Colonization in the Chicken Gut by a Bactericidal Mechanism.	Iwata T, Watanabe-Yanai A, Tamamura-Andoh Y, Arai N, Akiba M, Kusumoto M.	Appl Environ Microbiol	10.1128/aem.01701-22	2023
	Prevalence of C. Botulinum and C. Perfringens Spores in Food Products Available on Polish Market.	Grenda T, Grabczak M, Kwiatek K, Bober A.	J Vet Res	10.1515/jvetres-2017-0038	2017
	Lactobacillus salivarius CML352 Isolated from Chinese Local Breed Chicken Modulates the Gut Microbiota and Improves Intestinal Health and Egg Quality in Late-Phase Laying Hens.	Xu C, Wei F, Yang X, Feng Y, Liu D, Hu Y.	Microorganisms	10.3390/microorganisms10040726	2022
Biotechnology	Recent advances in the science of human milk oligosaccharides	Urashima T, Ajisaka K, Ujihara T, Nakazaki E.	BBA Adv		2025
	Dietary fiber content in clinical ketogenic diets modifies the gut microbiome and seizure resistance in mice.	Ozcan E, Yu KB, Dinh L, Lum GR, Lau K, Hsu J, Arino M, Paramo J, Lopez-Romero A, Hsiao EY.	Nat Commun	10.1038/s41467-025-56091-7	2025
Genetics	Genome analysis of Clostridium perfringens isolates from healthy and necrotic enteritis infected chickens and turkeys.	Ronco T, Stegger M, Ng KL, Lilje B, Lyhs U, Andersen PS, Pedersen K.	BMC Res Notes	10.1186/s13104-017-2594-9	2017
	Analysing the Antibacterial Synergistic Interactions of Romanian Lavender Essential Oils via Gas Chromatography-Mass Spectrometry: In Vitro and In Silico Approaches.	Balasoiu Jigau RAC, Obistioiu D, Hulea A, Suleiman MA, Popescu I, Floares Oarga D, Imbrea IM, Neacsu AG, Smuleac L, Pascalau R, Crista L, Popescu CA, Samfira I, Imbrea F.	Plants (Basel)	10.3390/plants13152136	2024
	Phytochemical Composition, Antibacterial Activity, and Antioxidant Properties of the Artocarpus altilis Fruits to Promote Their Consumption in the Comoros Islands as Potential Health-Promoting Food or a Source of Bioactive Molecules for the Food Industry.	Soifoini T, Donno D, Jeannoda V, Rakoto DD, Msahazi A, Farhat SMM, Oulam MZ, Beccaro GL.	Foods	10.3390/foods10092136	2021
	Duplex real-time PCR assay with high-resolution melt analysis for the detection and quantification of Listeria species and Listeria monocytogenes in meat products.	Vishnuraj MR, Ajay G, Aravind Kumar N, Renuka J, Pollumahanti N, Anusha Chauhan H, Vaithiyanathan S, Rawool DB, Barbuddhe SB.	J Food Sci Technol	10.1007/s13197-023-05695-2	2023
	Two putative zinc metalloproteases contribute to the virulence of Clostridium perfringens strains that cause avian necrotic enteritis.	Wade B, Keyburn AL, Haring V, Ford M, Rood JI, Moore RJ.	J Vet Diagn Invest	10.1177/1040638719898689	2020
	Development and Evaluation of Alternative Methods to Identify the Three Most Common Serotypes of Salmonella enterica Causing Clinical Infections in Kazakhstan.	Barmak SM, Sinyavskiy YA, Berdygaliev AB, Sharmanov TS, Savitskaya IS, Sultankulova GT, Zholdybayeva EV.	Microorganisms	10.3390/microorganisms9112319	2021
Enzymology	Persistence of fecal indicator bacteria and associated genetic markers from wastewater treatment plant effluents in freshwater microcosms.	Chern EC, Wymer L, Brenner K, Oshima K, Haugland RA.	J Water Health	10.2166/wh.2021.152	2022
	Draft Genome Sequence of Clostridium perfringens Strain JJC, a Highly Efficient Hydrogen Producer Isolated from Landfill Leachate Sludge.	Wong YM, Juan JC, Gan HM, Austin CM.	Genome Announc	10.1128/genomea.00064-14	2014
Metabolism	Validation and Stabilization of a Prophage Lysin of Clostridium perfringens by Using Yeast Surface Display and Coevolutionary Models.	Ritter SC, Hackel BJ.	Appl Environ Microbiol	10.1128/aem.00054-19	2019
	Inflammasome Activation Induced by Perfringolysin O of Clostridium perfringens and Its Involvement in the Progression of Gas Gangrene.	Yamamura K, Ashida H, Okano T, Kinoshita-Daitoku R, Suzuki S, Ohtani K, Hamagaki M, Ikeda T, Suzuki T.	Front Microbiol	10.3389/fmicb.2019.02406	2019
	Bacterial Contamination of Platelet Products.	Jacobs MR, Zhou B, Tayal A, Maitta RW.	Microorganisms	10.3390/microorganisms12020258	2024
Enzymology	Detection of Potato ring rot Pathogen Clavibacter michiganensis subsp. sepedonicus by Loop-mediated isothermal amplification (LAMP) assay.	Sagcan H, Turgut Kara N.	Sci Rep	10.1038/s41598-019-56680-9	2019
Enzymology	Clostridium botulinum and Clostridium perfringens Occurrence in Kazakh Honey Samples.	Maikanov B, Mustafina R, Auteleyeva L, Wisniewski J, Anusz K, Grenda T, Kwiatek K, Goldsztejn M, Grabczak M.	Toxins (Basel)	10.3390/toxins11080472	2019
	An atypical lipoteichoic acid from Clostridium perfringens elicits a broadly cross-reactive and protective immune response.	Wenzel CQ, Mills DC, Dobruchowska JM, Vlach J, Nothaft H, Nation P, Azadi P, Melville SB, Carlson RW, Feldman MF, Szymanski CM.	J Biol Chem	10.1074/jbc.ra119.009978	2020
	Firmicutes Dysbiosis After Chlorhexidine Prophylaxis in Healthy Patients Submitted to Impacted Lower Third Molar Extraction.	Neves CAD, Alves CH, Rocha NC, Rizzardi KF, Russi KL, Palazzi AAA, Parisotto TM, Girardello R.	Front Cell Infect Microbiol	10.3389/fcimb.2021.702014	2021
Enzymology	Pharmacokinetics, Pharmacodynamic Efficacy Prediction Indexes and Monte Carlo Simulations of Enrofloxacin Hydrochloride Against Bacterial Strains That Induce Common Clinical Diseases in Broiler Chickens.	Bonassa KPD, Miragliotta MY, Simas RC, Eberlin MN, Anadon A, Anadon A, Moreno RA, Reyes FGR.	Front Vet Sci	10.3389/fvets.2020.606872	2020
	Optimization and Effect of Water Hardness for the Production of Slightly Acidic Electrolyzed Water on Sanitization Efficacy.	Yan P, Jo HY, Chelliah R, Jo KH, Woo NC, Wook MS, Oh DH.	Front Microbiol	10.3389/fmicb.2022.816671	2022
	Development of Multienzyme Isothermal Rapid Amplification (MIRA) Combined with Lateral-Flow Dipstick (LFD) Assay to Detect Species-Specific tlh and Pathogenic trh and tdh Genes of Vibrio parahaemolyticus.	Park SB, Zhang Y.	Pathogens	10.3390/pathogens13010057	2024
	In vitro fermentation of copra meal hydrolysate by chicken microbiota.	Prayoonthien P, Nitisinprasert S, Keawsompong S.	3 Biotech	10.1007/s13205-017-1058-1	2018
Pathogenicity	Prevalence, toxin gene profile, antibiotic resistance, and molecular characterization of Clostridium perfringens from diarrheic and non-diarrheic dogs in Korea.	Chon JW, Seo KH, Bae D, Park JH, Khan S, Sung K.	J Vet Sci	10.4142/jvs.2018.19.3.368	2018
	Effects of Bile Acids and Nisin on the Production of Enterotoxin by Clostridium perfringens in a Nutrient-Rich Medium.	Park M, Rafii F.	Int J Microbiol	10.1155/2018/7276523	2018
	NetF-producing Clostridium perfringens and its associated diseases in dogs and foals.	Mehdizadeh Gohari I, Unterer S, Whitehead AE, Prescott JF.	J Vet Diagn Invest	10.1177/1040638720904714	2020
Enzymology	Architecturally complex O-glycopeptidases are customized for mucin recognition and hydrolysis.	Pluvinage B, Ficko-Blean E, Noach I, Stuart C, Thompson N, McClure H, Buenbrazo N, Wakarchuk W, Boraston AB.	Proc Natl Acad Sci U S A	10.1073/pnas.2019220118	2021
	Purification and Anti-pathogenic Properties of Immunoglobulin Concentrates from Porcine Blood.	Jung TH, Choi JH, Koh KC, Jeon WM, Han KS.	Korean J Food Sci Anim Resour	10.5851/kosfa.2017.37.5.743	2017
Genetics	Molecular epidemiology of Clostridium neonatale and its relationship with the occurrence of necrotizing enterocolitis in preterm neonates.	Hosny M, Baptiste E, Levasseur A, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2019.100612	2019
	Biofilm formation of Clostridium perfringens and its exposure to low-dose antimicrobials.	Charlebois A, Jacques M, Archambault M.	Front Microbiol	10.3389/fmicb.2014.00183	2014
	Synthesis, characterization and antibacterial activity of novel heterocycle, coumacine, and two of its derivatives.	Mustafa YF.	Saudi Pharm J	10.1016/j.jsps.2018.03.010	2018
	Misprediction of Structural Disorder in Halophiles.	Pancsa R, Kovacs D, Tompa P.	Molecules	10.3390/molecules24030479	2019
	Evaluation of the Antimicrobial and Antivirulent Potential of Essential Oils Isolated from Juniperus oxycedrus L. ssp. macrocarpa Aerial Parts.	Spengler G, Gajdacs M, Donadu MG, Usai M, Marchetti M, Ferrari M, Mazzarello V, Zanetti S, Nagy F, Kovacs R.	Microorganisms	10.3390/microorganisms10040758	2022
	Bacterial composition of a competitive exclusion product and its correlation with product efficacy at reducing Salmonella in poultry.	Lee MD, Pedroso AA, Maurer JJ.	Front Physiol	10.3389/fphys.2022.1043383	2022
	Anti-MRSA and Biological Activities of Propolis Concentrations Loaded to Chitosan Nanoemulsion for Pharmaceutics Applications.	Alarjani KM, Yehia HM, Badr AN, Ali HS, Al-Masoud AH, Alhaqbani SM, Alkhatib SA, Rady AM.	Pharmaceutics	10.3390/pharmaceutics15102386	2023
Metabolism	Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78Å resolution.	Moroz OV, Blagova E, Taylor E, Turkenburg JP, Skov LK, Gippert GP, Schnorr KM, Ming L, Ye L, Klausen M, Cohn MT, Schmidt EGW, Nymand-Grarup S, Davies GJ, Wilson KS.	PLoS One	10.1371/journal.pone.0248190	2021
Metabolism	Assessment of Potential Probiotic and Synbiotic Properties of Lactic Acid Bacteria Grown In Vitro with Starch-Based Soluble Corn Fiber or Inulin.	Garcia-Nunez IM, Santacruz A, Serna-Saldivar SO, Hernandez SLC, Amaya Guerra CA.	Foods	10.3390/foods11244020	2022
	Inactivation Strategies for Clostridium perfringens Spores and Vegetative Cells.	Talukdar PK, Udompijitkul P, Hossain A, Sarker MR.	Appl Environ Microbiol	10.1128/aem.02731-16	2017
	Effect of a Synbiotic Mix on Intestinal Structural Changes, and Salmonella Typhimurium and Clostridium Perfringens Colonization in Broiler Chickens.	Villagran-de la Mora Z, Nuno K, Vazquez-Paulino O, Avalos H, Castro-Rosas J, Gomez-Aldapa C, Angulo C, Ascencio F, Villarruel-Lopez A.	Animals (Basel)	10.3390/ani9100777	2019
	Targeted Mass Spectrometry Analysis of Clostridium perfringens Toxins.	Duracova M, Klimentova J, Myslivcova Fucikova A, Zidkova L, Sheshko V, Rehulkova H, Dresler J, Krocova Z.	Toxins (Basel)	10.3390/toxins11030177	2019
Pathogenicity	Ligilactobacillus salivarius CNCM I-4866, a potential probiotic candidate, shows anti-inflammatory properties in vitro and in vivo.	Carbonne C, Chadi S, Kropp C, Molimard L, Chain F, Langella P, Martin R.	Front Microbiol	10.3389/fmicb.2023.1270974	2023
	Antibiotic Resistance of Human Periodontal Pathogen Parvimonas micra Over 10 Years.	Rams TE, Sautter JD, van Winkelhoff AJ.	Antibiotics (Basel)	10.3390/antibiotics9100709	2020
	Crystal structure of the phosphate-binding protein (PBP-1) of an ABC-type phosphate transporter from Clostridium perfringens.	Gonzalez D, Richez M, Bergonzi C, Chabriere E, Elias M.	Sci Rep	10.1038/srep06636	2014
	Clinical Findings and Antimicrobial Susceptibility of Anaerobic Bacteria Isolated in Bloodstream Infections.	Cobo F, Borrego J, Gomez E, Casanovas I, Calatrava E, Foronda C, Navarro-Mari JM.	Antibiotics (Basel)	10.3390/antibiotics9060345	2020
	Antibacterial Properties of Copper Oxide Nanoparticles (Review).	Gudkov SV, Burmistrov DE, Fomina PA, Validov SZ, Kozlov VA.	Int J Mol Sci	10.3390/ijms252111563	2024
Pathogenicity	Antimicrobial activities of six essential oils commonly used as condiments in Brazil against Clostridium perfringens.	Radaelli M, da Silva BP, Weidlich L, Hoehne L, Flach A, da Costa LA, Ethur EM.	Braz J Microbiol	10.1016/j.bjm.2015.10.001	2016
	Development of a fluorescence assay for highly sensitive detection of Pseudomonas aeruginosa based on an aptamer-carbon dots/graphene oxide system.	Wang H, Chi Z, Cong Y, Wang Z, Jiang F, Geng J, Zhang P, Ju P, Dong Q, Liu C.	RSC Adv	10.1039/c8ra04819c	2018
	In Vitro and In Vivo Activities, Absorption, Tissue Distribution, and Excretion of OBP-4, a Potential Anti-Clostridioides difficile Agent.	Liu L, Zhou X, Li B, Cheng F, Cui H, Li J, Zhang J.	Antimicrob Agents Chemother	10.1128/aac.00581-21	2021
Metabolism	Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens.	Grondin JM, Duan D, Kirlin AC, Abe KT, Chitayat S, Spencer HL, Spencer C, Campigotto A, Houliston S, Arrowsmith CH, Allingham JS, Boraston AB, Smith SP.	PLoS One	10.1371/journal.pone.0171606	2017
	Lyso-Gb3 modulates the gut microbiota and decreases butyrate production.	Aguilera-Correa JJ, Madrazo-Clemente P, Martinez-Cuesta MDC, Pelaez C, Ortiz A, Sanchez-Nino MD, Esteban J, Requena T.	Sci Rep	10.1038/s41598-019-48426-4	2019
	Novel systems modeling methodology in comparative microbial metabolomics: identifying key enzymes and metabolites implicated in autism spectrum disorders.	Heberling C, Dhurjati P.	Int J Mol Sci	10.3390/ijms16048949	2015
Metabolism	Generation of recombinant baculovirus expressing atoxic C-terminal CPA toxin of Clostridium perfringens and production of specific antibodies.	Forti K, Cagiola M, Pellegrini M, Anzalone L, Di Paolo A, Corneli S, Severi G, De Giuseppe A.	BMC Biotechnol	10.1186/s12896-019-0597-4	2020
	Identification of accessory genome regions in poultry Clostridium perfringens isolates carrying the netB plasmid.	Lepp D, Gong J, Songer JG, Boerlin P, Parreira VR, Prescott JF.	J Bacteriol	10.1128/jb.01032-12	2013
	Extension of the taxonomic coverage of the family GH126 outside Firmicutes and in silico characterization of its non-catalytic terminal domains.	Kerenyiova L, Janecek S.	3 Biotech	10.1007/s13205-020-02415-x	2020
	Genome sequencing and analysis of a type A Clostridium perfringens isolate from a case of bovine clostridial abomasitis.	Nowell VJ, Kropinski AM, Songer JG, MacInnes JI, Parreira VR, Prescott JF.	PLoS One	10.1371/journal.pone.0032271	2012
	Next generation sequencing data of a defined microbial mock community.	Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T.	Sci Data	10.1038/sdata.2016.81	2016
	Multifunctional Silver(I) Complexes with Metronidazole Drug Reveal Antimicrobial Properties and Antitumor Activity against Human Hepatoma and Colorectal Adenocarcinoma Cells.	Zyro D, Radko L, Sliwinska A, Checinska L, Kusz J, Korona-Glowniak I, Przekora A, Wojcik M, Posyniak A, Ochocki J.	Cancers (Basel)	10.3390/cancers14040900	2022
	The In Vitro and In Vivo Synergistic Antimicrobial Activity Assessment of Vacuum Microwave Assisted Aqueous Extracts from Pomegranate and Avocado Fruit Peels and Avocado Seeds Based on a Mixtures Design Model.	Skenderidis P, Leontopoulos S, Petrotos K, Mitsagga C, Giavasis I.	Plants (Basel)	10.3390/plants10091757	2021
	Automated Real-Time PCR Detection of Tickborne Diseases Using the Panther Fusion Open Access System.	Stellrecht KA, Wilson LI, Castro AJ, Maceira VP.	Microbiol Spectr	10.1128/spectrum.02808-22	2022
Pathogenicity	Microfluidizing Technique Application for Algerian Cymbopogon citratus (DC.) Stapf Effects Enhanced Volatile Content, Antimicrobial, and Anti-Mycotoxigenic Properties.	Boudechicha A, Aouf A, Farouk A, Ali HS, Elkhadragy MF, Yehia HM, Badr AN.	Molecules	10.3390/molecules28145367	2023
	In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides.	Wesener DA, Beller ZW, Hill MF, Yuan H, Belanger DB, Frankfater C, Terrapon N, Henrissat B, Rodionov DA, Leyn SA, Osterman A, van Hylckama Vlieg JET, Gordon JI.	Nat Chem Biol	10.1038/s41589-024-01763-6	2025
	Insights into the Phytochemical and Multifunctional Biological Profile of Spices from the Genus Piper.	Luca SV, Gawel-Beben K, Strzepek-Gomolka M, Czech K, Trifan A, Zengin G, Korona-Glowniak I, Minceva M, Gertsch J, Skalicka-Wozniak K.	Antioxidants (Basel)	10.3390/antiox10101642	2021
Enzymology	Time-to-detection of bacteria and yeast with the BACTEC FX versus BacT/Alert Virtuo blood culture systems.	Somily AM, Habib HA, Torchyan AA, Sayyed SB, Absar M, Al-Aqeel R, Binkhamis AK.	Ann Saudi Med	10.5144/0256-4947.2018.194	2018
Pathogenicity	A Thermophilic Phage Endolysin Fusion to a Clostridium perfringens-Specific Cell Wall Binding Domain Creates an Anti-Clostridium Antimicrobial with Improved Thermostability.	Swift SM, Seal BS, Garrish JK, Oakley BB, Hiett K, Yeh HY, Woolsey R, Schegg KM, Line JE, Donovan DM.	Viruses	10.3390/v7062758	2015
	Influence of pCP1NetB ancillary genes on the virulence of Clostridium perfringens poultry necrotic enteritis strain CP1.	Zhou H, Lepp D, Pei Y, Liu M, Yin X, Ma R, Prescott JF, Gong J.	Gut Pathog	10.1186/s13099-016-0152-y	2017
Pathogenicity	Antimicrobial susceptibility of Clostridium perfringens isolates of bovine, chicken, porcine, and turkey origin from Ontario.	Slavic D, Boerlin P, Fabri M, Klotins KC, Zoethout JK, Weir PE, Bateman D.	Can J Vet Res		2011
	Genomic Background and Phylogeny of cfiA-Positive Bacteroides fragilis Strains Resistant to Meropenem-EDTA.	Valdezate S, Cobo F, Monzon S, Medina-Pascual MJ, Zaballos A, Cuesta I, Pino-Rosa S, Villalon P.	Antibiotics (Basel)	10.3390/antibiotics10030304	2021
	The Restriction-Modification Systems of Clostridium carboxidivorans P7.	Kottenhahn P, Philipps G, Bunk B, Sproer C, Jennewein S.	Microorganisms	10.3390/microorganisms11122962	2023
	Europium Nanoparticle-Based Lateral Flow Strip Biosensors Combined with Recombinase Polymerase Amplification for Simultaneous Detection of Five Zoonotic Foodborne Pathogens.	Jin B, Ma B, Mei Q, Xu S, Deng X, Hong Y, Li J, Xu H, Zhang M.	Biosensors (Basel)	10.3390/bios13060652	2023
	In vitro Antibacterial Efficacy of Non-Antibiotic Growth Promoters in Poultry Industry.	Aljumaah MR, Alkhulaifi MM, Abudabos AM.	J Poult Sci	10.2141/jpsa.0190042	2020
	Comparative genomic hybridization analysis shows different epidemiology of chromosomal and plasmid-borne cpe-carrying Clostridium perfringens type A.	Lahti P, Lindstrom M, Somervuo P, Heikinheimo A, Korkeala H.	PLoS One	10.1371/journal.pone.0046162	2012
	Identification of the Anti-Infective Aborycin Biosynthetic Gene Cluster from Deep-Sea-Derived Streptomyces sp. SCSIO ZS0098 Enables Production in a Heterologous Host.	Shao M, Ma J, Li Q, Ju J.	Mar Drugs	10.3390/md17020127	2019
Phylogeny	Novel multiplex TaqMan assay for differentiation of the four major pathogenic Brachyspira species in swine.	Scherrer S, Stephan R.	Microbiologyopen	10.1002/mbo3.1169	2021
	A cost-effective anaerobic culture method & its comparison with a standard method.	Saha US, Misra R, Tiwari D, Prasad KN.	Indian J Med Res	10.4103/0971-5916.200881	2016
	Phage Endolysins: Advances in the World of Food Safety.	Nazir A, Xu X, Liu Y, Chen Y.	Cells	10.3390/cells12172169	2023
Metabolism	The Glycoprotease CpaA Secreted by Medically Relevant Acinetobacter Species Targets Multiple O-Linked Host Glycoproteins.	Haurat MF, Scott NE, Di Venanzio G, Lopez J, Pluvinage B, Boraston AB, Ferracane MJ, Feldman MF.	mBio	10.1128/mbio.02033-20	2020
Metabolism	Safety Evaluations of Bifidobacterium bifidum BGN4 and Bifidobacterium longum BORI.	Kim MJ, Ku S, Kim SY, Lee HH, Jin H, Kang S, Li R, Johnston TV, Park MS, Ji GE.	Int J Mol Sci	10.3390/ijms19051422	2018
Enzymology	Identification of an Important Orphan Histidine Kinase for the Initiation of Sporulation and Enterotoxin Production by Clostridium perfringens Type F Strain SM101.	Freedman JC, Li J, Mi E, McClane BA.	mBio	10.1128/mbio.02674-18	2019
	Antiviral, Antimicrobial and Antibiofilm Activity of Selenoesters and Selenoanhydrides.	Spengler G, Kincses A, Mosolygo T, Marc MA, Nove M, Gajdacs M, Sanmartin C, McNeil HE, Blair JMA, Dominguez-Alvarez E.	Molecules	10.3390/molecules24234264	2019
	Modulation of the Bifidobacterial Communities of the Dog Microbiota by Zeolite.	Sabbioni A, Ferrario C, Milani C, Mancabelli L, Riccardi E, Di Ianni F, Beretti V, Superchi P, Ossiprandi MC.	Front Microbiol	10.3389/fmicb.2016.01491	2016
	Enzymatically prepared alginate oligosaccharides improve broiler chicken growth performance by modulating the gut microbiota and growth hormone signals.	Zhu La AT, Feng Y, Hu D, Feng Y, Jin X, Liu D, Guo Y, Cheng G, Hu Y.	J Anim Sci Biotechnol	10.1186/s40104-023-00887-4	2023
Metabolism	Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.	Trastoy B, Naegeli A, Anso I, Sjogren J, Guerin ME.	Nat Commun	10.1038/s41467-020-18696-y	2020
	Firmicutes Levels in the Mouth Reflect the Gut Condition With Respect to Obesity and Early Childhood Caries.	Rizzardi KF, Indiani CMDSP, Mattos-Graner RO, de Sousa ET, Nobre-Dos-Santos M, Parisotto TM.	Front Cell Infect Microbiol	10.3389/fcimb.2021.593734	2021
	Gut bacteria convert glucocorticoids into progestins in the presence of hydrogen gas.	McCurry MD, D'Agostino GD, Walsh JT, Bisanz JE, Zalosnik I, Dong X, Morris DJ, Korzenik JR, Edlow AG, Balskus EP, Turnbaugh PJ, Huh JR, Devlin AS.	Cell	10.1016/j.cell.2024.05.005	2024
	Breastfeeding and the major fermentation metabolite lactate determine occurrence of Peptostreptococcaceae in infant feces.	Huertas-Diaz L, Kyhnau R, Ingribelli E, Neuzil-Bunesova V, Li Q, Sasaki M, Lauener RP, Roduit C, Frei R, Study Group CC, Sundekilde U, Schwab C.	Gut Microbes	10.1080/19490976.2023.2241209	2023
	Synthesis of hydrazone-based polyhydroquinoline derivatives - antibacterial activities, alpha-glucosidase inhibitory capability, and DFT study.	Ismail M, Ahmad R, Halim SA, Khan AA, Ullah S, Latif A, Ahmad M, Khan A, Ozdemir FA, Khalid A, Al-Harrasi A, Ali M.	RSC Adv	10.1039/d4ra00045e	2024
Pathogenicity	Rocket-miR, a translational launchpad for miRNA-based antimicrobial drug development.	Neff SL, Hampton TH, Koeppen K, Sarkar S, Latario CJ, Ross BD, Stanton BA.	mSystems	10.1128/msystems.00653-23	2023
	Comparative In Vitro Resistance of Human Periodontal Bacterial Pathogens to Tinidazole and Four Other Antibiotics.	Rams TE, Sautter JD, van Winkelhoff AJ.	Antibiotics (Basel)	10.3390/antibiotics9020068	2020
	Genome Wide Analysis for Searching Novel Markers to Rapidly Identify Clostridium Strains.	Kekre A, Bhushan A, Kumar P, Kalia VC.	Indian J Microbiol	10.1007/s12088-015-0535-7	2015
Pathogenicity	The botanical origin and antioxidant, anti-BACE1 and antiproliferative properties of bee pollen from different regions of South Korea.	Zou Y, Hu J, Huang W, Zhu L, Shao M, Dordoe C, Ahn YJ, Wang D, Zhao Y, Xiong Y, Wang X.	BMC Complement Med Ther	10.1186/s12906-020-03023-1	2020
Pathogenicity	Antibacterial Activity and Membrane-Disruptive Mechanism of 3-p-trans-Coumaroyl-2-hydroxyquinic Acid, a Novel Phenolic Compound from Pine Needles of Cedrus deodara, against Staphylococcus aureus.	Wu Y, Bai J, Zhong K, Huang Y, Qi H, Jiang Y, Gao H.	Molecules	10.3390/molecules21081084	2016
Pathogenicity	Cationic Intrinsically Disordered Antimicrobial Peptides (CIDAMPs) Represent a New Paradigm of Innate Defense with a Potential for Novel Anti-Infectives.	Latendorf T, Gerstel U, Wu Z, Bartels J, Becker A, Tholey A, Schroder JM.	Sci Rep	10.1038/s41598-019-39219-w	2019
	Ruminococcin C, an anti-clostridial sactipeptide produced by a prominent member of the human microbiota Ruminococcus gnavus.	Balty C, Guillot A, Fradale L, Brewee C, Boulay M, Kubiak X, Benjdia A, Berteau O.	J Biol Chem	10.1074/jbc.ra119.009416	2019
	Potential Role of the Host-Derived Cell-Wall Binding Domain of Endolysin CD16/50L as a Molecular Anchor in Preservation of Uninfected Clostridioides difficile for New Rounds of Phage Infection.	Phothichaisri W, Chankhamhaengdecha S, Janvilisri T, Nuadthaisong J, Phetruen T, Fagan RP, Chanarat S.	Microbiol Spectr	10.1128/spectrum.02361-21	2022
	Improved antimicrobial effect of ginseng extract by heat transformation.	Xue P, Yao Y, Yang XS, Feng J, Ren GX.	J Ginseng Res	10.1016/j.jgr.2016.03.002	2017
Phenotype	Tandem Mass Tag-Based Quantitative Proteomics and Virulence Phenotype of Hemolymph-Treated Bacillus thuringiensis kurstaki Cells Reveal New Insights on Bacterial Pathogenesis in Insects.	Sun Y, Yang L, Rodriguez-Cabrera L, Ding Y, Leng C, Qiao H, Huang S, Kan Y, Yao L, Wright DJ, Li D, Ayra-Pardo C.	Microbiol Spectr	10.1128/spectrum.00604-21	2021
	Potential Probiotic Strains From Milk and Water Kefir Grains in Singapore-Use for Defense Against Enteric Bacterial Pathogens.	Tan LL, Tan CH, Ng NKJ, Tan YH, Conway PL, Loo SCJ.	Front Microbiol	10.3389/fmicb.2022.857720	2022
	The application of rumen simulation technique (RUSITEC) for studying dynamics of the bacterial community and metabolome in rumen fluid and the effects of a challenge with Clostridium perfringens.	Wetzels SU, Eger M, Burmester M, Kreienbrock L, Abdulmawjood A, Pinior B, Wagner M, Breves G, Mann E.	PLoS One	10.1371/journal.pone.0192256	2018
	Presenting a rapid method for detection of Bacillus cereus, Listeria monocytogenes and Campylobacter jejuni in food samples.	Razei A, Sorouri R, Mousavi SL, Nazarian S, Amani J, Aghamollaei H.	Iran J Basic Med Sci	10.22038/ijbms.2017.9275	2017
Enzymology	Safety and Accuracy of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Identification of Highly Pathogenic Organisms.	Rudrik JT, Soehnlen MK, Perry MJ, Sullivan MM, Reiter-Kintz W, Lee PA, Pettit D, Tran A, Swaney E.	J Clin Microbiol	10.1128/jcm.01023-17	2017
Pathogenicity	Transcriptional Profile during Deoxycholate-Induced Sporulation in a Clostridium perfringens Isolate Causing Foodborne Illness.	Yasugi M, Okuzaki D, Kuwana R, Takamatsu H, Fujita M, Sarker MR, Miyake M.	Appl Environ Microbiol	10.1128/aem.00252-16	2016
	Utility of Stool PCR for the Diagnosis of COVID-19: Comparison of Two Commercial Platforms.	Szymczak WA, Goldstein DY, Orner EP, Fecher RA, Yokoda RT, Skalina KA, Narlieva M, Gendlina I, Fox AS.	J Clin Microbiol	10.1128/jcm.01369-20	2020
Enzymology	Substrate specificity characterization for eight putative nudix hydrolases. Evaluation of criteria for substrate identification within the Nudix family.	Nguyen VN, Park A, Xu A, Srouji JR, Brenner SE, Kirsch JF.	Proteins	10.1002/prot.25163	2016
Enzymology	Sialidases from gut bacteria: a mini-review.	Juge N, Tailford L, Owen CD.	Biochem Soc Trans	10.1042/bst20150226	2016
	Perfrin, a novel bacteriocin associated with netB positive Clostridium perfringens strains from broilers with necrotic enteritis.	Timbermont L, De Smet L, Van Nieuwerburgh F, Parreira VR, Van Driessche G, Haesebrouck F, Ducatelle R, Prescott J, Deforce D, Devreese B, Van Immerseel F.	Vet Res	10.1186/1297-9716-45-40	2014
Phylogeny	A wide variety of Clostridium perfringens type A food-borne isolates that carry a chromosomal cpe gene belong to one multilocus sequence typing cluster.	Xiao Y, Wagendorp A, Moezelaar R, Abee T, Wells-Bennik MH.	Appl Environ Microbiol	10.1128/aem.01486-12	2012
	Discovering multiple types of DNA methylation from bacteria and microbiome using nanopore sequencing.	Tourancheau A, Mead EA, Zhang XS, Fang G.	Nat Methods	10.1038/s41592-021-01109-3	2021
	Genotyping of Clostridium perfringens isolated from healthy and diseased ostriches (Struthio camelus).	Razmyar J, Kalidari GA, Tolooe A, Rad M, Movassaghi AR.	Iran J Microbiol		2014
Enzymology	Diet supplementation with an organic acids-based formulation affects gut microbiota and expression of gut barrier genes in broilers.	Palamidi I, Mountzouris KC.	Anim Nutr	10.1016/j.aninu.2018.03.007	2018
	Global Phenotypic Characterization of Effects of Fluoroquinolone Resistance Selection on the Metabolic Activities and Drug Susceptibilities of Clostridium perfringens Strains.	Park M, Rafii F.	Int J Microbiol	10.1155/2014/456979	2014
Pathogenicity	Effects of Ligustrum robustum on gut microbes and obesity in rats.	Xie ZM, Zhou T, Liao HY, Ye Q, Liu S, Qi L, Huang J, Zuo HJ, Pei XF.	World J Gastroenterol	10.3748/wjg.v21.i46.13042	2015
	Antioxidant and antimicrobial activities of ethanol extract from the stem and leaf of Impatiens balsamina L. (Balsaminaceae) at different harvest times.	Kang SN, Goo YM, Yang MR, Ibrahim RI, Cho JH, Kim IS, Lee OH.	Molecules	10.3390/molecules18066356	2013
Phylogeny	16S rRNA gene sequencing, multilocus sequence analysis, and mass spectrometry identification of the proposed new species "Clostridium neonatale".	Bouvet P, Ferraris L, Dauphin B, Popoff MR, Butel MJ, Aires J.	J Clin Microbiol	10.1128/jcm.00477-14	2014
	Insights into the Microbiological Safety of Vermicompost and Vermicompost Tea Produced by South African Smallholder Farmers.	Atanda AC, Adeleke RA, Jooste PJ, Madoroba E.	Indian J Microbiol	10.1007/s12088-018-0748-7	2018
	Ultrasound, Acetic Acid, and Peracetic Acid as Alternatives Sanitizers to Chlorine Compounds for Fresh-Cut Kale Decontamination.	de Moraes Motta Machado MC, Lepaus BM, Bernardes PC, de Sao Jose JFB.	Molecules	10.3390/molecules27207019	2022
	Boswellia Essential Oil: Natural Antioxidant as an Effective Antimicrobial and Anti-Inflammatory Agent.	Obistioiu D, Hulea A, Cocan I, Alexa E, Negrea M, Popescu I, Herman V, Imbrea IM, Heghedus-Mindru G, Suleiman MA, Radulov I, Imbrea F.	Antioxidants (Basel)	10.3390/antiox12101807	2023
	Identification of novel pathogenicity loci in Clostridium perfringens strains that cause avian necrotic enteritis.	Lepp D, Roxas B, Parreira VR, Marri PR, Rosey EL, Gong J, Songer JG, Vedantam G, Prescott JF.	PLoS One	10.1371/journal.pone.0010795	2010
	Development of a recombinase polymerase amplification assay with lateral flow dipstick (RPA-LFD) for rapid detection of Shigella spp. and enteroinvasive Escherichia coli.	Bian Z, Liu W, Jin J, Hao Y, Jiang L, Xie Y, Zhang H.	PLoS One	10.1371/journal.pone.0278869	2022
Enzymology	Direct loop-mediated isothermal amplification assay for on-site detection of Staphylococcus aureus.	Tian X, Feng J, Wang Y.	FEMS Microbiol Lett	10.1093/femsle/fny092	2018
	Comparative Structure-Activity Analysis of the Antimicrobial Activity, Cytotoxicity, and Mechanism of Action of the Fungal Cyclohexadepsipeptides Enniatins and Beauvericin.	Olleik H, Nicoletti C, Lafond M, Courvoisier-Dezord E, Xue P, Hijazi A, Baydoun E, Perrier J, Maresca M.	Toxins (Basel)	10.3390/toxins11090514	2019
Metabolism	Alanyl-phosphatidylglycerol and lysyl-phosphatidylglycerol are translocated by the same MprF flippases and have similar capacities to protect against the antibiotic daptomycin in Staphylococcus aureus.	Slavetinsky CJ, Peschel A, Ernst CM.	Antimicrob Agents Chemother	10.1128/aac.00370-12	2012
Metabolism	Conservation and evolutionary dynamics of the agr cell-to-cell communication system across firmicutes.	Wuster A, Babu MM.	J Bacteriol	10.1128/jb.01135-07	2008
Metabolism	Hypermotility in Clostridium perfringens strain SM101 is due to spontaneous mutations in genes linked to cell division.	Liu H, McCord KD, Howarth J, Popham DL, Jensen RV, Melville SB.	J Bacteriol	10.1128/jb.01614-14	2014
	Effects of Temperature and Packaging on the Growth Kinetics of Clostridium perfringens in Ready-to-eat Jokbal (Pig's Trotters).	Park HJ, Na YJ, Cho JI, Lee SH, Yoon KS.	Korean J Food Sci Anim Resour	10.5851/kosfa.2014.34.1.80	2014
Metabolism	Development of a covalent inhibitor of gut bacterial bile salt hydrolases.	Adhikari AA, Seegar TCM, Ficarro SB, McCurry MD, Ramachandran D, Yao L, Chaudhari SN, Ndousse-Fetter S, Banks AS, Marto JA, Blacklow SC, Devlin AS.	Nat Chem Biol	10.1038/s41589-020-0467-3	2020
	Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden.	Hourigan SK, Ahn M, Gibson KM, Perez-Losada M, Felix G, Weidner M, Leibowitz I, Niederhuber JE, Sears CL, Crandall KA, Oliva-Hemker M.	Open Forum Infect Dis	10.1093/ofid/ofz379	2019
	Regulation of Respiratory Pathways in Campylobacterota: A Review.	van der Stel AX, Wosten MMSM.	Front Microbiol	10.3389/fmicb.2019.01719	2019
Metabolism	Characterization of a unique class C acid phosphatase from Clostridium perfringens.	Reilly TJ, Chance DL, Calcutt MJ, Tanner JJ, Felts RL, Waller SC, Henzl MT, Mawhinney TP, Ganjam IK, Fales WH.	Appl Environ Microbiol	10.1128/aem.01599-08	2009
	Pharmacokinetics of Continuous Infusion Meropenem With Concurrent Extracorporeal Life Support and Continuous Renal Replacement Therapy: A Case Report.	Cies JJ, Moore WS, Conley SB, Dickerman MJ, Small C, Carella D, Shea P, Parker J, Chopra A.	J Pediatr Pharmacol Ther	10.5863/1551-6776-21.1.92	2016
	Maternal immunization with vaccines containing recombinant NetB toxin partially protects progeny chickens from necrotic enteritis.	Keyburn AL, Portela RW, Ford ME, Bannam TL, Yan XX, Rood JI, Moore RJ.	Vet Res	10.1186/1297-9716-44-108	2013
Metabolism	Discovery of an ene-reductase for initiating flavone and flavonol catabolism in gut bacteria.	Yang G, Hong S, Yang P, Sun Y, Wang Y, Zhang P, Jiang W, Gu Y.	Nat Commun	10.1038/s41467-021-20974-2	2021
Enzymology	High occurrence of Fusobacterium nucleatum and Clostridium difficile in the intestinal microbiota of colorectal carcinoma patients.	Fukugaiti MH, Ignacio A, Fernandes MR, Ribeiro Junior U, Nakano V, Avila-Campos MJ.	Braz J Microbiol	10.1590/s1517-838246420140665	2015
	Characterization of fecal microbiota across seven Chinese ethnic groups by quantitative polymerase chain reaction.	Kwok LY, Zhang J, Guo Z, Gesudu Q, Zheng Y, Qiao J, Huo D, Zhang H.	PLoS One	10.1371/journal.pone.0093631	2014
Biotechnology	Probiotic potential of lactic acid bacteria obtained from fermented curly kale juice.	Szutowska J, Gwiazdowska D.	Arch Microbiol	10.1007/s00203-020-02095-4	2021
	In silico, in vitro and in vivo analysis of binding affinity between N and C-domains of Clostridium perfringens alpha toxin.	Uppalapati SR, Kingston JJ, Qureshi IA, Murali HS, Batra HV.	PLoS One	10.1371/journal.pone.0082024	2013
Phylogeny	Multilocus sequence typing subtypes of poultry Clostridium perfringens isolates demonstrate disease niche partitioning.	Hibberd MC, Neumann AP, Rehberger TG, Siragusa GR.	J Clin Microbiol	10.1128/jcm.01884-10	2011
Phylogeny	Rapid detection and differentiation of Salmonella species, Salmonella Typhimurium and Salmonella Enteritidis by multiplex quantitative PCR.	Heymans R, Vila A, van Heerwaarden CAM, Jansen CCC, Castelijn GAA, van der Voort M, Biesta-Peters EG.	PLoS One	10.1371/journal.pone.0206316	2018
Enzymology	LysPBC2, a Novel Endolysin Harboring a Bacillus cereus Spore Binding Domain.	Kong M, Na H, Ha NC, Ryu S.	Appl Environ Microbiol	10.1128/aem.02462-18	2019
Pathogenicity	Characterization of genes encoding for acquired bacitracin resistance in Clostridium perfringens.	Charlebois A, Jalbert LA, Harel J, Masson L, Archambault M.	PLoS One	10.1371/journal.pone.0044449	2012
Pathogenicity	Antimicrobial properties of a chitosan dextran-based hydrogel for surgical use.	Aziz MA, Cabral JD, Brooks HJ, Moratti SC, Hanton LR.	Antimicrob Agents Chemother	10.1128/aac.05463-11	2012
	Antimicrobial Potential of the Genera Geobacillus and Parageobacillus, as Well as Endolysins Biosynthesized by Their Bacteriophages.	Zebrowska J, Witkowska M, Struck A, Laszuk PE, Raczuk E, Ponikowska M, Skowron PM, Zylicz-Stachula A.	Antibiotics (Basel)	10.3390/antibiotics11020242	2022
Enzymology	Evaluation of a Novel Stool Antigen Rapid Test Kit for Detection of Helicobacter pylori Infection.	Kakiuchi T, Okuda M, Hashiguchi K, Imamura I, Nakayama A, Matsuo M.	J Clin Microbiol	10.1128/jcm.01825-18	2019
Metabolism	Clostridioides difficile Senses and Hijacks Host Heme for Incorporation into an Oxidative Stress Defense System.	Knippel RJ, Wexler AG, Miller JM, Beavers WN, Weiss A, de Crecy-Lagard V, Edmonds KA, Giedroc DP, Skaar EP.	Cell Host Microbe	10.1016/j.chom.2020.05.015	2020
	Naturally occurring Clostridium perfringens nontoxic alpha-toxin variant as a potential vaccine candidate against alpha-toxin-associated diseases.	Schoepe H, Pache C, Neubauer A, Potschka H, Schlapp T, Wieler LH, Baljer G.	Infect Immun	10.1128/iai.69.11.7194-7196.2001	2001
	DNA Sequence Signatures for Rapid Detection of Six Target Bacterial Pathogens Using PCR Assays.	Nagamine K, Hung GC, Li B, Lo SC.	Microbiol Insights	10.4137/mbi.s29736	2015
	A sequential statistical approach towards an optimized production of a broad spectrum bacteriocin substance from a soil bacterium Bacillus sp. YAS 1 strain.	Embaby AM, Heshmat Y, Hussein A, Marey HS.	ScientificWorldJournal	10.1155/2014/396304	2014
Enzymology	Glycoside hydrolase family 89 alpha-N-acetylglucosaminidase from Clostridium perfringens specifically acts on GlcNAc alpha1,4Gal beta1R at the non-reducing terminus of O-glycans in gastric mucin.	Fujita M, Tsuchida A, Hirata A, Kobayashi N, Goto K, Osumi K, Hirose Y, Nakayama J, Yamanoi T, Ashida H, Mizuno M.	J Biol Chem	10.1074/jbc.m110.206722	2011
	Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets.	Wang L, Liu Q, Chen Y, Zheng X, Wang C, Qi Y, Dong Y, Xiao Y, Chen C, Chen T, Huang Q, Zhai Z, Long C, Yang H, Li J, Wang L, Zhang G, Liao P, Liu YX, Huang P, Huang J, Wang Q, Chu H, Yin J, Yin Y.	Microbiome	10.1186/s40168-022-01278-z	2022
	Isothiocyanates: An Overview of Their Antimicrobial Activity against Human Infections.	Romeo L, Iori R, Rollin P, Bramanti P, Mazzon E.	Molecules	10.3390/molecules23030624	2018
	Bio-preservation of ground beef meat by Enterococcus faecalis CECT7121.	Sparo MD, Confalonieri A, Urbizu L, Ceci M, Bruni SF.	Braz J Microbiol	10.1590/s1517-83822013005000003	2013
Metabolism	Type IV pili and the CcpA protein are needed for maximal biofilm formation by the gram-positive anaerobic pathogen Clostridium perfringens.	Varga JJ, Therit B, Melville SB.	Infect Immun	10.1128/iai.00692-08	2008
Metabolism	N-acetylglucosamine recognition by a family 32 carbohydrate-binding module from Clostridium perfringens NagH.	Ficko-Blean E, Boraston AB.	J Mol Biol	10.1016/j.jmb.2009.04.066	2009
Enzymology	Structural analysis of a bacterial exo-alpha-D-N-acetylglucosaminidase in complex with an unusual disaccharide found in class III mucin.	Ficko-Blean E, Boraston AB.	Glycobiology	10.1093/glycob/cwr165	2012
	Generation of single-copy transposon insertions in Clostridium perfringens by electroporation of phage mu DNA transposition complexes.	Lanckriet A, Timbermont L, Happonen LJ, Pajunen MI, Pasmans F, Haesebrouck F, Ducatelle R, Savilahti H, Van Immerseel F.	Appl Environ Microbiol	10.1128/aem.02214-08	2009
	One-Tube Nested Real-Time PCR Assay for Rapid Screening of Porcine Cytomegalovirus in Clinical Samples.	Wang HY, Song JK, Shin S, Choi KM, Kim H.	Front Vet Sci	10.3389/fvets.2020.586045	2020
Pathogenicity	In vitro and in vivo activities of HPi1, a selective antimicrobial against Helicobacter pylori.	Gavrish E, Shrestha B, Chen C, Lister I, North EJ, Yang L, Lee RE, Han A, Williams B, Charnuska D, Coleman K, Lewis K, LaFleur MD.	Antimicrob Agents Chemother	10.1128/aac.02573-13	2014
Enzymology	Analysis of a new family of widely distributed metal-independent alpha-mannosidases provides unique insight into the processing of N-linked glycans.	Gregg KJ, Zandberg WF, Hehemann JH, Whitworth GE, Deng L, Vocadlo DJ, Boraston AB.	J Biol Chem	10.1074/jbc.m111.223172	2011
Genetics	Comparative genomics of VirR regulons in Clostridium perfringens strains.	Frandi A, Mengoni A, Brilli M.	BMC Microbiol	10.1186/1471-2180-10-65	2010
	Multifunctional properties of Lactobacillus plantarum strains WiKim83 and WiKim87 as a starter culture for fermented food.	Jung JH, Kim SJ, Lee JY, Yoon SR, You SY, Kim SH.	Food Sci Nutr	10.1002/fsn3.1075	2019
	Detection and toxin typing of Clostridium perfringens in formalin-fixed, paraffin-embedded tissue samples by PCR.	Wu J, Zhang W, Xie B, Wu M, Tong X, Kalpoe J, Zhang D.	J Clin Microbiol	10.1128/jcm.01324-08	2009
Phylogeny	Genotypic and phenotypic characterization of Clostridium perfringens isolates from Darmbrand cases in post-World War II Germany.	Ma M, Li J, McClane BA.	Infect Immun	10.1128/iai.00818-12	2012
Enzymology	A clostridial endo-beta-galactosidase that cleaves both blood group A and B glycotopes: the first member of a new glycoside hydrolase family, GH98.	Anderson KM, Ashida H, Maskos K, Dell A, Li SC, Li YT.	J Biol Chem	10.1074/jbc.m414099200	2005
Phylogeny	Multilocus sequence typing analysis of Clostridium perfringens isolates from necrotic enteritis outbreaks in broiler chicken populations.	Chalmers G, Bruce HL, Hunter DB, Parreira VR, Kulkarni RR, Jiang YF, Prescott JF, Boerlin P.	J Clin Microbiol	10.1128/jcm.01548-08	2008
	The potential of native and engineered Clostridia for biomass biorefining.	Ponsetto P, Sasal EM, Mazzoli R, Valetti F, Gilardi G.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1423935	2024
Metabolism	An Amino Acid Substitution in RNA Polymerase That Inhibits the Utilization of an Alternative Sigma Factor.	Wang Erickson AF, Deighan P, Garcia CP, Weinzierl ROJ, Hochschild A, Losick R.	J Bacteriol	10.1128/jb.00277-17	2017
	Unique Evolution of Symbiobacterium thermophilum Suggested from Gene Content and Orthologous Protein Sequence Comparisons.	Oshima K, Ueda K, Beppu T, Nishida H.	Int J Evol Biol	10.4061/2011/376831	2010
Enzymology	Quantitative detection of Clostridium perfringens in the broiler fowl gastrointestinal tract by real-time PCR.	Wise MG, Siragusa GR.	Appl Environ Microbiol	10.1128/aem.71.7.3911-3916.2005	2005
	Evaluation of microbiological, chemical, and sensory properties of cooked probiotic sausages containing different concentrations of astaxanthin, thymol, and nitrite.	Mohammadpourfard I, Khanjari A, Akhonzadeh Basti A, Herrero-Latorre C, Shariatifar N, Hosseini H.	Food Sci Nutr	10.1002/fsn3.2000	2021
Metabolism	Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens.	Yuan Y, Zallot R, Grove TL, Payan DJ, Martin-Verstraete I, Sepic S, Balamkundu S, Neelakandan R, Gadi VK, Liu CF, Swairjo MA, Dedon PC, Almo SC, Gerlt JA, de Crecy-Lagard V.	Proc Natl Acad Sci U S A	10.1073/pnas.1909604116	2019
Biotechnology	Multiplex 16S rRNA-derived geno-biochip for detection of 16 bacterial pathogens from contaminated foods.	Shin HH, Hwang BH, Cha HJ.	Biotechnol J	10.1002/biot.201600043	2016
Metabolism	BEC, a novel enterotoxin of Clostridium perfringens found in human clinical isolates from acute gastroenteritis outbreaks.	Yonogi S, Matsuda S, Kawai T, Yoda T, Harada T, Kumeda Y, Gotoh K, Hiyoshi H, Nakamura S, Kodama T, Iida T.	Infect Immun	10.1128/iai.01759-14	2014
Pathogenicity	In Vitro and In Vivo Activities of DS86760016, a Novel Leucyl-tRNA Synthetase Inhibitor for Gram-Negative Pathogens.	Purnapatre KP, Rao M, Pandya M, Khanna A, Chaira T, Bambal R, Upadhyay DJ, Masuda N.	Antimicrob Agents Chemother	10.1128/aac.01987-17	2018
Genetics	Investigating host-microbiome interactions by droplet based microfluidics.	Tauzin AS, Pereira MR, Van Vliet LD, Colin PY, Laville E, Esque J, Laguerre S, Henrissat B, Terrapon N, Lombard V, Leclerc M, Dore J, Hollfelder F, Potocki-Veronese G.	Microbiome	10.1186/s40168-020-00911-z	2020
Phylogeny	Phylogenomics of "Candidatus Hepatoplasma crinochetorum," a lineage of mollicutes associated with noninsect arthropods.	Leclercq S, Dittmer J, Bouchon D, Cordaux R.	Genome Biol Evol	10.1093/gbe/evu020	2014
Metabolism	NanI Sialidase, CcpA, and CodY Work Together To Regulate Epsilon Toxin Production by Clostridium perfringens Type D Strain CN3718.	Li J, Freedman JC, McClane BA.	J Bacteriol	10.1128/jb.00349-15	2015
	Differential diagnosis of Brucella abortus by real-time PCR based on a single-nucleotide polymorphisms.	Kim JY, Kang SI, Lee JJ, Lee K, Sung SR, Erdenebaataar J, Vanaabaatar B, Jung SC, Park YH, Yoo HS, Her M.	J Vet Med Sci	10.1292/jvms.15-0541	2016
Enzymology	Divergent modes of glycan recognition by a new family of carbohydrate-binding modules.	Gregg KJ, Finn R, Abbott DW, Boraston AB.	J Biol Chem	10.1074/jbc.m709865200	2008
Pathogenicity	A Gut-Restricted Lithocholic Acid Analog as an Inhibitor of Gut Bacterial Bile Salt Hydrolases.	Adhikari AA, Ramachandran D, Chaudhari SN, Powell CE, Li W, McCurry MD, Banks AS, Devlin AS.	ACS Chem Biol	10.1021/acschembio.1c00192	2021
Metabolism	Use of a mariner-based transposon mutagenesis system to isolate Clostridium perfringens mutants deficient in gliding motility.	Liu H, Bouillaut L, Sonenshein AL, Melville SB.	J Bacteriol	10.1128/jb.01288-12	2013
Phylogeny	Identification of Clostridium species and DNA fingerprinting of Clostridium perfringens by amplified fragment length polymorphism analysis.	Keto-Timonen R, Heikinheimo A, Eerola E, Korkeala H.	J Clin Microbiol	10.1128/jcm.01275-06	2006
Pathogenicity	In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria.	Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.01038-10	2011
Enzymology	Quantification of bacterial indicators and zoonotic pathogens in dairy wastewater ponds.	Dungan RS, Klein M, Leytem AB.	Appl Environ Microbiol	10.1128/aem.02470-12	2012
	Development of Candida-Specific Real-Time PCR Assays for the Detection and Identification of Eight Medically Important Candida Species.	Zhang J, Hung GC, Nagamine K, Li B, Tsai S, Lo SC.	Microbiol Insights	10.4137/mbi.s38517	2016
Pathogenicity	In vitro and in vivo activities of the novel Ketolide RBx 14255 against Clostridium difficile.	Kumar M, Mathur T, Barman TK, Ramkumar G, Bhati A, Shukla G, Kalia V, Pandya M, Raj VS, Upadhyay DJ, Vaishnavi C, Chakrabarti A, Das B, Bhatnagar PK.	Antimicrob Agents Chemother	10.1128/aac.00015-12	2012
Enzymology	The NanI and NanJ sialidases of Clostridium perfringens are not essential for virulence.	Chiarezza M, Lyras D, Pidot SJ, Flores-Diaz M, Awad MM, Kennedy CL, Cordner LM, Phumoonna T, Poon R, Hughes ML, Emmins JJ, Alape-Giron A, Rood JI.	Infect Immun	10.1128/iai.00548-09	2009
Enzymology	Diversity and abundance of zoonotic pathogens and indicators in manures of feedlot cattle in Australia.	Klein M, Brown L, Tucker RW, Ashbolt NJ, Stuetz RM, Roser DJ.	Appl Environ Microbiol	10.1128/aem.01095-10	2010
Phylogeny	One step forwards for the routine use of high-throughput DNA sequencing in environmental monitoring. An efficient and standardizable method to maximize the detection of environmental bacteria.	Bruno A, Sandionigi A, Galimberti A, Siani E, Labra M, Cocuzza C, Ferri E, Casiraghi M.	Microbiologyopen	10.1002/mbo3.421	2017
	Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.	Peer A, Smith SP, Bayer EA, Lamed R, Borovok I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01420.x	2009
	Reducing the Oxidation Level of Dextran Aldehyde in a Chitosan/Dextran-Based Surgical Hydrogel Increases Biocompatibility and Decreases Antimicrobial Efficacy.	Chan M, Brooks HJ, Moratti SC, Hanton LR, Cabral JD.	Int J Mol Sci	10.3390/ijms160613798	2015
Enzymology	Identification of lacto-N-Biose I phosphorylase from Vibrio vulnificus CMCP6.	Nakajima M, Kitaoka M.	Appl Environ Microbiol	10.1128/aem.02846-07	2008
Genetics	Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging.	Zepeda Mendoza ML, Roggenbuck M, Manzano Vargas K, Hansen LH, Brunak S, Gilbert MTP, Sicheritz-Ponten T.	Acta Vet Scand	10.1186/s13028-018-0415-3	2018
	PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples.	Hong C, Manimaran S, Shen Y, Perez-Rogers JF, Byrd AL, Castro-Nallar E, Crandall KA, Johnson WE.	Microbiome	10.1186/2049-2618-2-33	2014
Metabolism	The human gut symbiont Ruminococcus gnavus shows specificity to blood group A antigen during mucin glycan foraging: Implication for niche colonisation in the gastrointestinal tract.	Wu H, Crost EH, Owen CD, van Bakel W, Martinez Gascuena A, Latousakis D, Hicks T, Walpole S, Urbanowicz PA, Ndeh D, Monaco S, Sanchez Salom L, Griffiths R, Reynolds RS, Colvile A, Spencer DIR, Walsh M, Angulo J, Juge N.	PLoS Biol	10.1371/journal.pbio.3001498	2021
Metabolism	Unravelling the Biological Potential of Pinus pinaster Bark Extracts.	Ferreira-Santos P, Genisheva Z, Botelho C, Santos J, Ramos C, Teixeira JA, Rocha CMR.	Antioxidants (Basel)	10.3390/antiox9040334	2020
Metabolism	Structural and functional analysis of the CspB protease required for Clostridium spore germination.	Adams CM, Eckenroth BE, Putnam EE, Doublie S, Shen A.	PLoS Pathog	10.1371/journal.ppat.1003165	2013
Enzymology	Freshwater suspended sediments and sewage are reservoirs for enterotoxin-positive Clostridium perfringens.	Mueller-Spitz SR, Stewart LB, Klump JV, McLellan SL.	Appl Environ Microbiol	10.1128/aem.01702-09	2010
Metabolism	Recognition of protein-linked glycans as a determinant of peptidase activity.	Noach I, Ficko-Blean E, Pluvinage B, Stuart C, Jenkins ML, Brochu D, Buenbrazo N, Wakarchuk W, Burke JE, Gilbert M, Boraston AB.	Proc Natl Acad Sci U S A	10.1073/pnas.1615141114	2017
Phylogeny	Species identification of clinical isolates of anaerobic bacteria: a comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry systems.	Justesen US, Holm A, Knudsen E, Andersen LB, Jensen TG, Kemp M, Skov MN, Gahrn-Hansen B, Moller JK.	J Clin Microbiol	10.1128/jcm.05788-11	2011
	The Role of luxS in Histophilus somni Virulence and Biofilm Formation.	Pan Y, Siddaramappa S, Sandal I, Dickerman A, Bandara AB, Inzana TJ.	Infect Immun	10.1128/iai.00567-20	2021
Metabolism	Construction and characterization of a lactose-inducible promoter system for controlled gene expression in Clostridium perfringens.	Hartman AH, Liu H, Melville SB.	Appl Environ Microbiol	10.1128/aem.01536-10	2011
Metabolism	Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification.	Haft DH, Basu MK.	J Bacteriol	10.1128/jb.00040-11	2011
Pathogenicity	Influence of lack of CO2 on anaerobic bacteria: a quick method to verify the absence of CO2.	Killam RL, Barenfanger J, Cox M.	J Clin Microbiol	10.1128/jcm.41.5.2201-2002.2003	2003
Pathogenicity	An improved assay for rapid detection of viable Staphylococcus aureus cells by incorporating surfactant and PMA treatments in qPCR.	Zi C, Zeng D, Ling N, Dai J, Xue F, Jiang Y, Li B.	BMC Microbiol	10.1186/s12866-018-1273-x	2018
	Use of an EZ-Tn5-based random mutagenesis system to identify a novel toxin regulatory locus in Clostridium perfringens strain 13.	Vidal JE, Chen J, Li J, McClane BA.	PLoS One	10.1371/journal.pone.0006232	2009
Pathogenicity	Evaluation of impact of exposure of Sudan azo dyes and their metabolites on human intestinal bacteria.	Pan H, Feng J, He GX, Cerniglia CE, Chen H.	Anaerobe	10.1016/j.anaerobe.2012.05.002	2012
Phylogeny	Butyrate production in phylogenetically diverse Firmicutes isolated from the chicken caecum.	Eeckhaut V, Van Immerseel F, Croubels S, De Baere S, Haesebrouck F, Ducatelle R, Louis P, Vandamme P.	Microb Biotechnol	10.1111/j.1751-7915.2010.00244.x	2011
Metabolism	Novel endo-alpha-N-acetylgalactosaminidases with broader substrate specificity.	Koutsioulis D, Landry D, Guthrie EP.	Glycobiology	10.1093/glycob/cwn069	2008
Enzymology	Characterization of the bacterial gut microbiota of piglets suffering from new neonatal porcine diarrhoea.	Hermann-Bank ML, Skovgaard K, Stockmarr A, Strube ML, Larsen N, Kongsted H, Ingerslev HC, Molbak L, Boye M.	BMC Vet Res	10.1186/s12917-015-0419-4	2015
Enzymology	Small neuraminidase gene of Clostridium perfringens ATCC 10543: cloning, nucleotide sequence, and production.	Chien CH, Huang YC, Chen HY.	Enzyme Microb Technol	10.1016/s0141-0229(96)00129-9	1997
	Recombinant attenuated Salmonella enterica serovar typhimurium expressing the carboxy-terminal domain of alpha toxin from Clostridium perfringens induces protective responses against necrotic enteritis in chickens.	Zekarias B, Mo H, Curtiss R.	Clin Vaccine Immunol	10.1128/cvi.00457-07	2008
	A live oral recombinant Salmonella enterica serovar typhimurium vaccine expressing Clostridium perfringens antigens confers protection against necrotic enteritis in broiler chickens.	Kulkarni RR, Parreira VR, Jiang YF, Prescott JF.	Clin Vaccine Immunol	10.1128/cvi.00406-09	2010
	Safety and efficacy of muramidase from Trichoderma reesei DSM 32338 as a feed additive for chickens for fattening and minor poultry species.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Rychen G, Aquilina G, Azimonti G, Bampidis V, Bastos ML, Bories G, Chesson A, Flachowsky G, Gropp J, Kolar B, Kouba M, Lopez-Alonso M, Lopez Puente S, Mantovani A, Mayo B, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Brantom P, Dierick NA, Herman L, Glandorf B, Karenlampi S, Aguilera J, Anguita M, Cocconcelli PS.	EFSA J	10.2903/j.efsa.2018.5342	2018
Metabolism	Alpha-toxin of Clostridium perfringens is not an essential virulence factor in necrotic enteritis in chickens.	Keyburn AL, Sheedy SA, Ford ME, Williamson MM, Awad MM, Rood JI, Moore RJ.	Infect Immun	10.1128/iai.00806-06	2006
Enzymology	Alterations in DNA gyrase and topoisomerase IV in resistant mutants of Clostridium perfringens found after in vitro treatment with fluoroquinolones.	Rafii F, Park M, Novak JS.	Antimicrob Agents Chemother	10.1128/aac.49.2.488-492.2005	2005
Metabolism	Bifidobacterium bifidum lacto-N-biosidase, a critical enzyme for the degradation of human milk oligosaccharides with a type 1 structure.	Wada J, Ando T, Kiyohara M, Ashida H, Kitaoka M, Yamaguchi M, Kumagai H, Katayama T, Yamamoto K.	Appl Environ Microbiol	10.1128/aem.00149-08	2008
Phylogeny	Genetic diversity of Clostridium perfringens type A isolates from animals, food poisoning outbreaks and sludge.	Johansson A, Aspan A, Bagge E, Baverud V, Engstrom BE, Johansson KE.	BMC Microbiol	10.1186/1471-2180-6-47	2006
Enzymology	Structural and mechanistic insight into the basis of mucopolysaccharidosis IIIB.	Ficko-Blean E, Stubbs KA, Nemirovsky O, Vocadlo DJ, Boraston AB.	Proc Natl Acad Sci U S A	10.1073/pnas.0711491105	2008
Metabolism	Characterization of a phospholipid-regulated beta-galactosidase from Akkermansia muciniphila involved in mucin degradation.	Kosciow K, Deppenmeier U.	Microbiologyopen	10.1002/mbo3.796	2019
Enzymology	Site-directed mutations of the catalytic and conserved amino acids of the neuraminidase gene, nanH, of Clostridium perfringens ATCC 10543.	Chien CH, Shann YJ, Sheu SY.	Enzyme Microb Technol	10.1016/0141-0229(95)00245-6	1996
	Tangential-flow ultrafiltration with integrated inhibition detection for recovery of surrogates and human pathogens from large-volume source water and finished drinking water.	Gibson KE, Schwab KJ.	Appl Environ Microbiol	10.1128/aem.01164-10	2011
	Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms.	Eikmeyer FG, Rademacher A, Hanreich A, Hennig M, Jaenicke S, Maus I, Wibberg D, Zakrzewski M, Puhler A, Klocke M, Schluter A.	Biotechnol Biofuels	10.1186/1754-6834-6-49	2013
Biotechnology	Prevalence and characterization of enterotoxin gene-carrying Clostridium perfringens isolates from retail meat products in Japan.	Miki Y, Miyamoto K, Kaneko-Hirano I, Fujiuchi K, Akimoto S.	Appl Environ Microbiol	10.1128/aem.00783-08	2008
Metabolism	NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems.	Schmidt MC, Rocha AM, Padmanabhan K, Shpanskaya Y, Banfield J, Scott K, Mihelcic JR, Samatova NF.	PLoS Comput Biol	10.1371/journal.pcbi.1002490	2012
	Structural basis of Clostridium perfringens toxin complex formation.	Adams JJ, Gregg K, Bayer EA, Boraston AB, Smith SP.	Proc Natl Acad Sci U S A	10.1073/pnas.0803154105	2008
Metabolism	Rapid confirmation of Clostridium perfringens by using chromogenic and fluorogenic substrates.	Adcock PW, Saint CP.	Appl Environ Microbiol	10.1128/aem.67.9.4382-4384.2001	2001
Metabolism	Virulence gene regulation by the agr system in Clostridium perfringens.	Ohtani K, Yuan Y, Hassan S, Wang R, Wang Y, Shimizu T.	J Bacteriol	10.1128/jb.01455-08	2009
Enzymology	Microbial contents of vacuum cleaner bag dust and emitted bioaerosols and their implications for human exposure indoors.	Veillette M, Knibbs LD, Pelletier A, Charlebois R, Blais Lecours P, He C, Morawska L, Duchaine C.	Appl Environ Microbiol	10.1128/aem.01583-13	2013
	Ruminococcin C, a promising antibiotic produced by a human gut symbiont.	Chiumento S, Roblin C, Kieffer-Jaquinod S, Tachon S, Lepretre C, Basset C, Aditiyarini D, Olleik H, Nicoletti C, Bornet O, Iranzo O, Maresca M, Hardre R, Fons M, Giardina T, Devillard E, Guerlesquin F, Coute Y, Atta M, Perrier J, Lafond M, Duarte V.	Sci Adv	10.1126/sciadv.aaw9969	2019
Enzymology	Genetic diversity and virulence potential of clinical and environmental Aeromonas spp. isolates from a diarrhea outbreak.	Silva LCAD, Leal-Balbino TC, Melo BST, Mendes-Marques CL, Rezende AM, Almeida AMP, Leal NC.	BMC Microbiol	10.1186/s12866-017-1089-0	2017
Metabolism	Bioremediation of a Common Product of Food Processing by a Human Gut Bacterium.	Wolf AR, Wesener DA, Cheng J, Houston-Ludlam AN, Beller ZW, Hibberd MC, Giannone RJ, Peters SL, Hettich RL, Leyn SA, Rodionov DA, Osterman AL, Gordon JI.	Cell Host Microbe	10.1016/j.chom.2019.09.001	2019
Metabolism	A new alkalophilic isolate of Bacillus as a producer of cyclodextrin glycosyltransferase using cassava flour.	Coelho SL, Magalhaes VC, Marbach PA, Cazetta ML.	Braz J Microbiol	10.1016/j.bjm.2015.11.018	2016
Pathogenicity	Antimicrobial susceptibility pattern of Clostridium difficile and its relation to PCR ribotypes in a Swedish university hospital.	Aspevall O, Lundberg A, Burman LG, Akerlund T, Svenungsson B.	Antimicrob Agents Chemother	10.1128/aac.50.5.1890-1892.2006	2006
	Analysis of the botulinum neurotoxin type F gene clusters in proteolytic and nonproteolytic Clostridium botulinum and Clostridium barati.	East AK, Bhandari M, Hielm S, Collins MD.	Curr Microbiol	10.1007/s002849900376	1998
Enzymology	Carbohydrate recognition by an architecturally complex alpha-N-acetylglucosaminidase from Clostridium perfringens.	Ficko-Blean E, Stuart CP, Suits MD, Cid M, Tessier M, Woods RJ, Boraston AB.	PLoS One	10.1371/journal.pone.0033524	2012
	Gut microbiota, microinflammation, metabolic profile, and zonulin concentration in obese and normal weight subjects.	Zak-Golab A, Kocelak P, Aptekorz M, Zientara M, Juszczyk L, Martirosian G, Chudek J, Olszanecka-Glinianowicz M.	Int J Endocrinol	10.1155/2013/674106	2013
	Relationship between total phenolic contents and biological properties of propolis from 20 different regions in South Korea.	Wang X, Sankarapandian K, Cheng Y, Woo SO, Kwon HW, Perumalsamy H, Ahn YJ.	BMC Complement Altern Med	10.1186/s12906-016-1043-y	2016
Metabolism	Distribution of in vitro fermentation ability of lacto-N-biose I, a major building block of human milk oligosaccharides, in bifidobacterial strains.	Xiao JZ, Takahashi S, Nishimoto M, Odamaki T, Yaeshima T, Iwatsuki K, Kitaoka M.	Appl Environ Microbiol	10.1128/aem.01683-09	2010
	Dissecting the contributions of Clostridium perfringens type C toxins to lethality in the mouse intravenous injection model.	Fisher DJ, Fernandez-Miyakawa ME, Sayeed S, Poon R, Adams V, Rood JI, Uzal FA, McClane BA.	Infect Immun	10.1128/iai.00534-06	2006
Phylogeny	Evaluation of the Vitek 2 ANC card for identification of clinical isolates of anaerobic bacteria.	Lee EH, Degener JE, Welling GW, Veloo AC.	J Clin Microbiol	10.1128/jcm.02166-10	2011
Pathogenicity	In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria.	Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00595-08	2009
	BaiCD gene cluster abundance is negatively correlated with Clostridium difficile infection.	Solbach P, Chhatwal P, Woltemate S, Tacconelli E, Buhl M, Gerhard M, Thoeringer CK, Vehreschild MJGT, Jazmati N, Rupp J, Manns MP, Bachmann O, Suerbaum S.	PLoS One	10.1371/journal.pone.0196977	2018
	Inactivation of bacterial pathogens following exposure to light from a 405-nanometer light-emitting diode array.	Maclean M, MacGregor SJ, Anderson JG, Woolsey G.	Appl Environ Microbiol	10.1128/aem.01892-08	2009
Metabolism	Rational design of a new Trypanosoma rangeli trans-sialidase for efficient sialylation of glycans.	Jers C, Michalak M, Larsen DM, Kepp KP, Li H, Guo Y, Kirpekar F, Meyer AS, Mikkelsen JD.	PLoS One	10.1371/journal.pone.0083902	2014
	Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.	Traag BA, Pugliese A, Eisen JA, Losick R.	J Bacteriol	10.1128/jb.01778-12	2013
Enzymology	Portrait of an enzyme, a complete structural analysis of a multimodular {beta}-N-acetylglucosaminidase from Clostridium perfringens.	Ficko-Blean E, Gregg KJ, Adams JJ, Hehemann JH, Czjzek M, Smith SP, Boraston AB.	J Biol Chem	10.1074/jbc.m808954200	2009
Metabolism	Biochemical and Spectroscopic Characterization of a Radical S-Adenosyl-L-methionine Enzyme Involved in the Formation of a Peptide Thioether Cross-Link.	Bruender NA, Wilcoxen J, Britt RD, Bandarian V.	Biochemistry	10.1021/acs.biochem.6b00145	2016
Enzymology	A comparative genome analysis identifies distinct sorting pathways in gram-positive bacteria.	Comfort D, Clubb RT.	Infect Immun	10.1128/iai.72.5.2710-2722.2004	2004
	The poultry-associated microbiome: network analysis and farm-to-fork characterizations.	Oakley BB, Morales CA, Line J, Berrang ME, Meinersmann RJ, Tillman GE, Wise MG, Siragusa GR, Hiett KL, Seal BS.	PLoS One	10.1371/journal.pone.0057190	2013
	Transcription analysis of a lantibiotic gene cluster from Bifidobacterium longum DJO10A.	Lee JH, Li X, O'Sullivan DJ.	Appl Environ Microbiol	10.1128/aem.00571-11	2011
Enzymology	Multicenter evaluation of the Vitek 2 anaerobe and Corynebacterium identification card.	Rennie RP, Brosnikoff C, Turnbull L, Reller LB, Mirrett S, Janda W, Ristow K, Krilcich A.	J Clin Microbiol	10.1128/jcm.00450-08	2008
Phylogeny	Specific discrimination of three pathogenic Salmonella enterica subsp. enterica serotypes by carB-based oligonucleotide microarray.	Shin HH, Hwang BH, Seo JH, Cha HJ.	Appl Environ Microbiol	10.1128/aem.02978-13	2014
Metabolism	Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.	Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A.	BMC Genomics	10.1186/1471-2164-11-555	2010
Enzymology	Purification and characterization of neuraminidase from Clostridium perfringens.	Chien CH, Chang SC, Wei YH.	Proc Natl Sci Counc Repub China B		1989
Pathogenicity	In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone.	Tanaka K, Mikamo H, Nakao K, Watanabe K.	Antimicrob Agents Chemother	10.1128/aac.00639-06	2006
	Validity of the indicator organism paradigm for pathogen reduction in reclaimed water and public health protection.	Harwood VJ, Levine AD, Scott TM, Chivukula V, Lukasik J, Farrah SR, Rose JB.	Appl Environ Microbiol	10.1128/aem.71.6.3163-3170.2005	2005
Metabolism	Identification of surprisingly diverse type IV pili, across a broad range of gram-positive bacteria.	Imam S, Chen Z, Roos DS, Pohlschroder M.	PLoS One	10.1371/journal.pone.0028919	2011
Metabolism	Comparative genomics of ethanolamine utilization.	Tsoy O, Ravcheev D, Mushegian A.	J Bacteriol	10.1128/jb.00838-09	2009
Metabolism	Altered utilization of N-acetyl-D-galactosamine by Escherichia coli O157:H7 from the 2006 spinach outbreak.	Mukherjee A, Mammel MK, LeClerc JE, Cebula TA.	J Bacteriol	10.1128/jb.01737-07	2008
	Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.	Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R.	Int J Bacteriol	10.1155/2013/168742	2013
	Evaluation of a new cellulose sponge-tipped swab for microbiological sampling: a laboratory and clinical investigation.	Osterblad M, Jarvinen H, Lonnqvist K, Huikko S, Laippala P, Viljanto J, Arvilommi H, Huovinen P.	J Clin Microbiol	10.1128/jcm.41.5.1894-1900.2003	2003
Metabolism	A selective gut bacterial bile salt hydrolase alters host metabolism.	Yao L, Seaton SC, Ndousse-Fetter S, Adhikari AA, DiBenedetto N, Mina AI, Banks AS, Bry L, Devlin AS.	Elife	10.7554/elife.37182	2018
Enzymology	Pharmacodynamics of moxifloxacin against anaerobes studied in an in vitro pharmacokinetic model.	Noel AR, Bowker KE, Macgowan AP.	Antimicrob Agents Chemother	10.1128/aac.49.10.4234-4239.2005	2005
Pathogenicity	Fish oil enhances recovery of intestinal microbiota and epithelial integrity in chronic rejection of intestinal transplant.	Li Q, Zhang Q, Wang C, Tang C, Zhang Y, Li N, Li J.	PLoS One	10.1371/journal.pone.0020460	2011
Enzymology	Loop-mediated isothermal amplification assays for screening of bacterial integrons.	Yu G, Chen L, Lin CW, Li B, Cui H, Chen S, Miao J, Bian H, Chen D, Deng Y.	Biol Res	10.1186/0717-6287-47-53	2014
Pathogenicity	Low-level vancomycin resistance in Clostridium innocuum.	Mory F, Lozniewski A, David V, Carlier JP, Dubreuil L, Leclercq R.	J Clin Microbiol	10.1128/jcm.36.6.1767-1768.1998	1998
Metabolism	Microbial alkyl- and aryl-sulfatases: mechanism, occurrence, screening and stereoselectivities.	Toesch M, Schober M, Faber K.	Appl Microbiol Biotechnol	10.1007/s00253-013-5438-0	2014
Enzymology	Rapid detection and simultaneous genotyping of Cronobacter spp. (formerly Enterobacter sakazakii) in powdered infant formula using real-time PCR and high resolution melting (HRM) analysis.	Cai XQ, Yu HQ, Ruan ZX, Yang LL, Bai JS, Qiu DY, Jian ZH, Xiao YQ, Yang JY, Le TH, Zhu XQ.	PLoS One	10.1371/journal.pone.0067082	2013
Phylogeny	Epsilon-toxin is required for most Clostridium perfringens type D vegetative culture supernatants to cause lethality in the mouse intravenous injection model.	Sayeed S, Fernandez-Miyakawa ME, Fisher DJ, Adams V, Poon R, Rood JI, Uzal FA, McClane BA.	Infect Immun	10.1128/iai.73.11.7413-7421.2005	2005
Proteome	Bugging the bugs. Genomics and proteomics may provide new ways of making the lives of bacteria more miserable.	Moore A.	EMBO Rep	10.1038/sj.embor.embor817	2003
	alpha-Amylase: an enzyme specificity found in various families of glycoside hydrolases.	Janecek S, Svensson B, MacGregor EA.	Cell Mol Life Sci	10.1007/s00018-013-1388-z	2014
Metabolism	The effects of micronutrient deficiencies on bacterial species from the human gut microbiota.	Hibberd MC, Wu M, Rodionov DA, Li X, Cheng J, Griffin NW, Barratt MJ, Giannone RJ, Hettich RL, Osterman AL, Gordon JI.	Sci Transl Med	10.1126/scitranslmed.aal4069	2017
	Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4.	Chen K, Roberts E, Luthey-Schulten Z.	BMC Evol Biol	10.1186/1471-2148-9-179	2009
Biotechnology	Detection of enterotoxigenic Clostridium perfringens in food and fecal samples with a duplex PCR and the slide latex agglutination test.	Fach P, Popoff MR.	Appl Environ Microbiol	10.1128/aem.63.11.4232-4236.1997	1997
Metabolism	Ethanolamine utilization in Vibrio alginolyticus.	Khatri N, Khatri I, Subramanian S, Raychaudhuri S.	Biol Direct	10.1186/1745-6150-7-45	2012
Pathogenicity	In vitro activities of the lichen secondary metabolites vulpinic acid, (+)-usnic acid, and (-)-usnic acid against aerobic and anaerobic microorganisms.	Lauterwein M, Oethinger M, Belsner K, Peters T, Marre R.	Antimicrob Agents Chemother	10.1128/aac.39.11.2541	1995
Pathogenicity	In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.	Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.	Antimicrob Agents Chemother	10.1128/aac.01454-17	2018
Enzymology	Real-time PCR detection of pathogenic microorganisms in roof-harvested rainwater in Southeast Queensland, Australia.	Ahmed W, Huygens F, Goonetilleke A, Gardner T.	Appl Environ Microbiol	10.1128/aem.00331-08	2008
Genetics	Tracing lifestyle adaptation in prokaryotic genomes.	Altermann E.	Front Microbiol	10.3389/fmicb.2012.00048	2012
Metabolism	Identification of bacteriocin-like inhibitors from rumen Streptococcus spp. and isolation and characterization of bovicin 255.	Whitford MF, McPherson MA, Forster RJ, Teather RM.	Appl Environ Microbiol	10.1128/aem.67.2.569-574.2001	2001
	Unusual non-fluorescent broad spectrum siderophore activity (SID EGYII) by Pseudomonas aeruginosa strain EGYII DSM 101801 and a new insight towards simple siderophore bioassay.	Embaby AM, Heshmat Y, Hussein A.	AMB Express	10.1186/s13568-016-0192-1	2016
	Synthesis and Evaluation of the Antibacterial Activities of 13-Substituted Berberine Derivatives.	Olleik H, Yacoub T, Hoffer L, Gnansounou SM, Benhaiem-Henry K, Nicoletti C, Mekhalfi M, Pique V, Perrier J, Hijazi A, Baydoun E, Raymond J, Piccerelle P, Maresca M, Robin M.	Antibiotics (Basel)	10.3390/antibiotics9070381	2020
	Interspecies Interactions between Clostridium difficile and Candida albicans.	van Leeuwen PT, van der Peet JM, Bikker FJ, Hoogenkamp MA, Oliveira Paiva AM, Kostidis S, Mayboroda OA, Smits WK, Krom BP.	mSphere	10.1128/msphere.00187-16	2016
	Novel FR-900493 Analogues That Inhibit the Outgrowth of Clostridium difficile Spores.	Mitachi K, Yun HG, Kurosu SM, Eslamimehr S, Lemieux MR, Klaic L, Clemons WM, Kurosu M.	ACS Omega	10.1021/acsomega.7b01740	2018
Metabolism	A metabolic pathway leading to mannosylfructose biosynthesis in Agrobacterium tumefaciens uncovers a family of mannosyltransferases.	Torres LL, Salerno GL.	Proc Natl Acad Sci U S A	10.1073/pnas.0706709104	2007
Enzymology	Conventional and molecular methods for verification of results obtained with BacT/Alert Nonvent blood culture bottles.	Marlowe EM, Gibson L, Hogan J, Kaplan S, Bruckner DA.	J Clin Microbiol	10.1128/jcm.41.3.1266-1269.2003	2003
Pathogenicity	Determination of susceptibility of anaerobic bacteria to beta-lactam antibiotics by a tablet diffusion test.	Jansen JE, Bremmelgaard A.	APMIS	10.1111/j.1699-0463.1988.tb05330.x	1988
Enzymology	Yield of stool culture with isolate toxin testing versus a two-step algorithm including stool toxin testing for detection of toxigenic Clostridium difficile.	Reller ME, Lema CA, Perl TM, Cai M, Ross TL, Speck KA, Carroll KC.	J Clin Microbiol	10.1128/jcm.01305-07	2007
Metabolism	Slimy partners: the mucus barrier and gut microbiome in ulcerative colitis.	Fang J, Wang H, Zhou Y, Zhang H, Zhou H, Zhang X.	Exp Mol Med	10.1038/s12276-021-00617-8	2021
Metabolism	Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.	Duranti S, Turroni F, Lugli GA, Milani C, Viappiani A, Mangifesta M, Gioiosa L, Palanza P, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.01993-14	2014
Phylogeny	16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria.	Watts GS, Youens-Clark K, Slepian MJ, Wolk DM, Oshiro MM, Metzger GS, Dhingra D, Cranmer LD, Hurwitz BL.	J Appl Microbiol	10.1111/jam.13590	2017
	An upstream regulatory sequence stimulates expression of the perfringolysin O gene of Clostridium perfringens.	Shimizu T, Okabe A, Minami J, Hayashi H.	Infect Immun	10.1128/iai.59.1.137-142.1991	1991
Metabolism	Microarray method to monitor 40 intestinal bacterial species in the study of azo dye reduction.	Wang RF, Chen H, Paine DD, Cerniglia CE.	Biosens Bioelectron	10.1016/j.bios.2004.04.011	2004
Enzymology	Rapid stool-based diagnosis of Clostridium difficile infection by real-time PCR in a children's hospital.	Luna RA, Boyanton BL, Mehta S, Courtney EM, Webb CR, Revell PA, Versalovic J.	J Clin Microbiol	10.1128/jcm.01983-10	2011
Enzymology	Rapid detection of Clostridium difficile in feces by real-time PCR.	Belanger SD, Boissinot M, Clairoux N, Picard FJ, Bergeron MG.	J Clin Microbiol	10.1128/jcm.41.2.730-734.2003	2003
Phylogeny	Rapid identification of fungi by using the ITS2 genetic region and an automated fluorescent capillary electrophoresis system.	Turenne CY, Sanche SE, Hoban DJ, Karlowsky JA, Kabani AM.	J Clin Microbiol	10.1128/jcm.37.6.1846-1851.1999	1999
Metabolism	Profiling the humoral immune response of acute and chronic Q fever by protein microarray.	Vigil A, Chen C, Jain A, Nakajima-Sasaki R, Jasinskas A, Pablo J, Hendrix LR, Samuel JE, Felgner PL.	Mol Cell Proteomics	10.1074/mcp.m110.006304	2011
Metabolism	Composition and metabolic activities of bacterial biofilms colonizing food residues in the human gut.	Macfarlane S, Macfarlane GT.	Appl Environ Microbiol	10.1128/aem.00754-06	2006
Pathogenicity	Susceptibility testing of 7 antibiotics against anaerobic bacteria: comparison of 2 different media and carbon dioxide concentrations.	Jansen JE, Bremmelgaard A.	Acta Pathol Microbiol Immunol Scand B	10.1111/j.1699-0463.1987.tb03088.x	1987
Metabolism	Sudan azo dyes and Para Red degradation by prevalent bacteria of the human gastrointestinal tract.	Xu H, Heinze TM, Paine DD, Cerniglia CE, Chen H.	Anaerobe	10.1016/j.anaerobe.2009.06.007	2010
	Comparison of three transport systems (Starplex StarSwab II, the new Copan Vi-Pak Amies Agar Gel collection and transport swabs, and BBL Port-A-Cul) for maintenance of anaerobic and fastidious aerobic organisms.	Hindiyeh M, Acevedo V, Carroll KC.	J Clin Microbiol	10.1128/jcm.39.1.377-380.2001	2001
Pathogenicity	In vitro antimicrobial susceptibility of Brachyspira pilosicoli isolates from humans.	Brooke CJ, Hampson DJ, Riley TV.	Antimicrob Agents Chemother	10.1128/aac.47.7.2354-2357.2003	2003
Enzymology	Development of immunodetection system for botulinum neurotoxin type B using synthetic gene based recombinant protein.	Jain S, Ponmariappan S, Kumar O.	Indian J Med Res		2011
Genetics	Development of the human infant intestinal microbiota.	Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO.	PLoS Biol	10.1371/journal.pbio.0050177	2007
Enzymology	Specific detection of Arcobacter and Campylobacter strains in water and sewage by PCR and fluorescent in situ hybridization.	Moreno Y, Botella S, Alonso JL, Ferrus MA, Hernandez M, Hernandez J.	Appl Environ Microbiol	10.1128/aem.69.2.1181-1186.2003	2003
Enzymology	Comparison of a commercial real-time PCR assay for tcdB detection to a cell culture cytotoxicity assay and toxigenic culture for direct detection of toxin-producing Clostridium difficile in clinical samples.	Stamper PD, Alcabasa R, Aird D, Babiker W, Wehrlin J, Ikpeama I, Carroll KC.	J Clin Microbiol	10.1128/jcm.01613-08	2009
	Comparison of single and combination antimicrobial agents for prevention of experimental gas gangrene caused by Clostridium perfringens.	Stevens DL, Laine BM, Mitten JE.	Antimicrob Agents Chemother	10.1128/aac.31.2.312	1987
Phylogeny	Esterase electrophoretic polymorphism of human and animal strains of Clostridium perfringens.	Pons JL, Picard B, Niel P, Leluan G, Goullet P.	Appl Environ Microbiol	10.1128/aem.59.2.496-501.1993	1993
	Effect of pH on an in vitro model of gastric microbiota in enteral nutrition patients.	O'May GA, Reynolds N, Macfarlane GT.	Appl Environ Microbiol	10.1128/aem.71.8.4777-4783.2005	2005
Pathogenicity	In vitro evaluation of activities of nitazoxanide and tizoxanide against anaerobes and aerobic organisms.	Dubreuil L, Houcke I, Mouton Y, Rossignol JF.	Antimicrob Agents Chemother	10.1128/aac.40.10.2266	1996
Enzymology	Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization.	Sghir A, Gramet G, Suau A, Rochet V, Pochart P, Dore J.	Appl Environ Microbiol	10.1128/aem.66.5.2263-2266.2000	2000
Pathogenicity	Comparison of the in vitro activities of Bay 12-8039, a new quinolone, and other antimicrobials against clinically important anaerobes.	Aldridge KE, Ashcraft DS.	Antimicrob Agents Chemother	10.1128/aac.41.3.709	1997
Pathogenicity	In vitro activity of Sch 34343 and cefbuperazone against anaerobic bacteria.	Shafran SD, Wong J, Chow AW.	Antimicrob Agents Chemother	10.1128/aac.27.5.749	1985
Metabolism	Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage.	de Crecy-Lagard V, Forouhar F, Brochier-Armanet C, Tong L, Hunt JF.	Biol Direct	10.1186/1745-6150-7-32	2012
Pathogenicity	Comparative in vitro activities of a new quinolone, WIN 57273, and piperacillin plus tazobactam against anaerobic bacteria.	Venezia RA, Yocum DM, Robbiano EM, Echols RM.	Antimicrob Agents Chemother	10.1128/aac.34.9.1858	1990
Metabolism	Homologue structure of the SLAC1 anion channel for closing stomata in leaves.	Chen YH, Hu L, Punta M, Bruni R, Hillerich B, Kloss B, Rost B, Love J, Siegelbaum SA, Hendrickson WA.	Nature	10.1038/nature09487	2010
Enzymology	A possible role for Clostridium difficile in the etiology of calf enteritis.	Hammitt MC, Bueschel DM, Keel MK, Glock RD, Cuneo P, DeYoung DW, Reggiardo C, Trinh HT, Songer JG.	Vet Microbiol	10.1016/j.vetmic.2007.09.002	2008
Metabolism	The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence.	Hansen AM, Chaerkady R, Sharma J, Diaz-Mejia JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A.	PLoS Pathog	10.1371/journal.ppat.1003403	2013
	High-density microarray of small-subunit ribosomal DNA probes.	Wilson KH, Wilson WJ, Radosevich JL, DeSantis TZ, Viswanathan VS, Kuczmarski TA, Andersen GL.	Appl Environ Microbiol	10.1128/aem.68.5.2535-2541.2002	2002
Enzymology	Cloning and expression of the phospholipase C gene from Clostridium perfringens and Clostridium bifermentans.	Tso JY, Siebel C.	Infect Immun	10.1128/iai.57.2.468-476.1989	1989
Pathogenicity	In vitro activities of U-100592 and U-100766, novel oxazolidinone antibacterial agents.	Zurenko GE, Yagi BH, Schaadt RD, Allison JW, Kilburn JO, Glickman SE, Hutchinson DK, Barbachyn MR, Brickner SJ.	Antimicrob Agents Chemother	10.1128/aac.40.4.839	1996
Pathogenicity	Comparative antianaerobic activities of the ketolides HMR 3647 (RU 66647) and HMR 3004 (RU 64004).	Ednie LM, Jacobs MR, Appelbaum PC.	Antimicrob Agents Chemother	10.1128/aac.41.9.2019	1997
Biotechnology	Multiplex PCR for detection of botulinum neurotoxin-producing clostridia in clinical, food, and environmental samples.	De Medici D, Anniballi F, Wyatt GM, Lindstrom M, Messelhausser U, Aldus CF, Delibato E, Korkeala H, Peck MW, Fenicia L.	Appl Environ Microbiol	10.1128/aem.00805-09	2009
Metabolism	GT160-246, a toxin binding polymer for treatment of Clostridium difficile colitis.	Kurtz CB, Cannon EP, Brezzani A, Pitruzzello M, Dinardo C, Rinard E, Acheson DW, Fitzpatrick R, Kelly P, Shackett K, Papoulis AT, Goddard PJ, Barker RH, Palace GP, Klinger JD.	Antimicrob Agents Chemother	10.1128/aac.45.8.2340-2347.2001	2001
Pathogenicity	Eubacterium lentum ATCC 43055, a new reference strain for quality control of anaerobic susceptibility tests.	Barry AL, Zabransky RJ.	J Clin Microbiol	10.1128/jcm.28.10.2375-2376.1990	1990
Biotechnology	Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.	Li A, Benkoulouche M, Ladeveze S, Durand J, Cioci G, Laville E, Potocki-Veronese G.	Int J Mol Sci	10.3390/ijms23063043	2022
Metabolism	Histamine-producing pathway encoded on an unstable plasmid in Lactobacillus hilgardii 0006.	Lucas PM, Wolken WA, Claisse O, Lolkema JS, Lonvaud-Funel A.	Appl Environ Microbiol	10.1128/aem.71.3.1417-1424.2005	2005
Enzymology	Direct quantification of the enteric bacterium Oxalobacter formigenes in human fecal samples by quantitative competitive-template PCR.	Sidhu H, Holmes RP, Allison MJ, Peck AB.	J Clin Microbiol	10.1128/jcm.37.5.1503-1509.1999	1999
Pathogenicity	N-formimidoyl thienamycin (MK0787): in vitro activity against anaerobic bacteria.	Martin DA, Sanders CV, Marier RL.	Antimicrob Agents Chemother	10.1128/aac.21.1.168	1982
Phylogeny	Truncated human cytidylate-phosphate-deoxyguanylate-binding protein for improved nucleic acid amplification technique-based detection of bacterial species in human samples.	Sachse S, Straube E, Lehmann M, Bauer M, Russwurm S, Schmidt KH.	J Clin Microbiol	10.1128/jcm.02242-08	2009
Metabolism	Enterotoxin synthesis by nonsporulating cultures of Clostridium perfringens.	Goldner SB, Solberg M, Jones S, Post LS.	Appl Environ Microbiol	10.1128/aem.52.3.407-412.1986	1986
Pathogenicity	In vitro activities of a new des-fluoro(6) quinolone, garenoxacin, against clinical anaerobic bacteria.	Liebetrau A, Rodloff AC, Behra-Miellet J, Dubreuil L.	Antimicrob Agents Chemother	10.1128/aac.47.11.3667-3671.2003	2003
Metabolism	Real-time fluorogenic reverse transcription-PCR assays for detection of bacteriophage MS2.	O'Connell KP, Bucher JR, Anderson PE, Cao CJ, Khan AS, Gostomski MV, Valdes JJ.	Appl Environ Microbiol	10.1128/aem.72.1.478-483.2006	2006
Phylogeny	FunGene: the functional gene pipeline and repository.	Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR.	Front Microbiol	10.3389/fmicb.2013.00291	2013
Pathogenicity	Interactions of ciprofloxacin with clindamycin, metronidazole, cefoxitin, cefotaxime, and mezlocillin against gram-positive and gram-negative anaerobic bacteria.	Whiting JL, Cheng N, Chow AW.	Antimicrob Agents Chemother	10.1128/aac.31.9.1379	1987
Enzymology	Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis.	Walter J, Hertel C, Tannock GW, Lis CM, Munro K, Hammes WP.	Appl Environ Microbiol	10.1128/aem.67.6.2578-2585.2001	2001
Enzymology	Rapid identification of bacteria from positive blood cultures by terminal restriction fragment length polymorphism profile analysis of the 16S rRNA gene.	Christensen JE, Stencil JA, Reed KD.	J Clin Microbiol	10.1128/jcm.41.8.3790-3800.2003	2003
Cultivation	Survival of anaerobic bacteria in various thioglycolate and chopped meat broth formulations.	Claros MC, Citron DM, Goldstein EJ.	J Clin Microbiol	10.1128/jcm.33.9.2505-2507.1995	1995
Phylogeny	Identification and antimicrobial resistance patterns of clinical isolates of Clostridium clostridioforme, Clostridium innocuum, and Clostridium ramosum compared with those of clinical isolates of Clostridium perfringens.	Alexander CJ, Citron DM, Brazier JS, Goldstein EJ.	J Clin Microbiol	10.1128/jcm.33.12.3209-3215.1995	1995
Pathogenicity	Susceptibility of anaerobic bacteria to nine antimicrobial agents and demonstration of decreased susceptibility of Clostridium perfringens to penicillin.	Marrie TJ, Haldane EV, Swantee CA, Kerr EA.	Antimicrob Agents Chemother	10.1128/aac.19.1.51	1981
	Molecular characterization of vanB elements in naturally occurring gut anaerobes.	Ballard SA, Pertile KK, Lim M, Johnson PD, Grayson ML.	Antimicrob Agents Chemother	10.1128/aac.49.5.1688-1694.2005	2005
	Nucleotide sequence of the gene for perfringolysin O (theta-toxin) from Clostridium perfringens: significant homology with the genes for streptolysin O and pneumolysin.	Tweten RK.	Infect Immun	10.1128/iai.56.12.3235-3240.1988	1988
	Rapid focused sequencing: a multiplexed assay for simultaneous detection and strain typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis.	Turingan RS, Thomann HU, Zolotova A, Tan E, Selden RF.	PLoS One	10.1371/journal.pone.0056093	2013
	Isolation of a plasmid responsible for caseinase activity in Clostridium perfringens ATCC 3626B.	Blaschek HP, Solberg M.	J Bacteriol	10.1128/jb.147.1.262-266.1981	1981
Metabolism	Human beta-defensin 2 and beta-defensin 3 chimeric peptides reveal the structural basis of the pathogen specificity of their parent molecules.	Jung S, Mysliwy J, Spudy B, Lorenzen I, Reiss K, Gelhaus C, Podschun R, Leippe M, Grotzinger J.	Antimicrob Agents Chemother	10.1128/aac.00872-10	2011
Pathogenicity	Increased activity of a new chlorofluoroquinolone, BAY y 3118, compared with activities of ciprofloxacin, sparfloxacin, and other antimicrobial agents against anaerobic bacteria.	Aldridge KE.	Antimicrob Agents Chemother	10.1128/aac.38.7.1671	1994
Pathogenicity	E-4695, a new C-7 azetidinyl fluoronaphthyridine with enhanced activity against gram-positive and anaerobic pathogens.	Guinea J, Gargallo-Viola D, Robert M, Tudela E, Xicota MA, Garcia J, Esteve M, Coll R, Pares M, Roser R.	Antimicrob Agents Chemother	10.1128/aac.39.2.413	1995
Pathogenicity	Antianaerobic activity of the ketolide RU 64004 compared to activities of four macrolides, five beta-lactams, clindamycin, and metronidazole.	Ednie LM, Spangler SK, Jacobs MR, Appelbaum PC.	Antimicrob Agents Chemother	10.1128/aac.41.5.1037	1997
Pathogenicity	Antimicrobial susceptibilities and serogroups of clinical strains of Clostridium difficile isolated in France in 1991 and 1997.	Barbut F, Decre D, Burghoffer B, Lesage D, Delisle F, Lalande V, Delmee M, Avesani V, Sano N, Coudert C, Petit JC.	Antimicrob Agents Chemother	10.1128/aac.43.11.2607	1999
Pathogenicity	Production of monoclonal antibodies to Listeria monocytogenes and their application to determine the virulence of isolates from channel catfish.	Erdenlig S, Ainsworth AJ, Austin FW.	Appl Environ Microbiol	10.1128/aem.65.7.2827-2832.1999	1999
Pathogenicity	Susceptibilities of 201 anaerobes to erythromycin, azithromycin, clarithromycin, and roxithromycin by oxyrase agar dilution and E test methodologies.	Spangler SK, Jacobs MR, Appelbaum PC.	J Clin Microbiol	10.1128/jcm.33.5.1366-1367.1995	1995
Cultivation	Comparison of real-time PCR for detection of the tcdC gene with four toxin immunoassays and culture in diagnosis of Clostridium difficile infection.	Sloan LM, Duresko BJ, Gustafson DR, Rosenblatt JE.	J Clin Microbiol	10.1128/jcm.00032-08	2008
	Evaluation of the AnaeroPack system for growth of clinically significant anaerobes.	Delaney ML, Onderdonk AB.	J Clin Microbiol	10.1128/jcm.35.3.558-562.1997	1997
Pathogenicity	Evaluation of in vitro methods for testing ceftriaxone against anaerobic bacteria, including quality control guidelines.	Barry AL, Jones RN.	J Clin Microbiol	10.1128/jcm.26.4.776-777.1988	1988
Enzymology	Effective recovery of bacterial DNA and percent-guanine-plus-cytosine-based analysis of community structure in the gastrointestinal tract of broiler chickens.	Apajalahti JH, Sarkilahti LK, Maki BR, Heikkinen JP, Nurminen PH, Holben WE.	Appl Environ Microbiol	10.1128/aem.64.10.4084-4088.1998	1998
Enzymology	First case of type E wound botulism diagnosed using real-time PCR.	Artin I, Bjorkman P, Cronqvist J, Radstrom P, Holst E.	J Clin Microbiol	10.1128/jcm.01192-07	2007
Metabolism	SYBR®Green qPCR Salmonella detection system allowing discrimination at the genus, species and subspecies levels.	Barbau-Piednoir E, Bertrand S, Mahillon J, Roosens NH, Botteldoorn N.	Appl Microbiol Biotechnol	10.1007/s00253-013-5234-x	2013
Pathogenicity	In vitro and in vivo antibacterial activities of E-4497, a new 3-amine-3-methyl-azetidinyl tricyclic fluoroquinolone.	Gargallo-Viola D, Esteve M, Llovera S, Roca X, Guinea J.	Antimicrob Agents Chemother	10.1128/aac.35.3.442	1991
Pathogenicity	Susceptibility of anaerobic bacteria to BAY v 3522.	Nord CE, Rylander M, Norrby SR.	Antimicrob Agents Chemother	10.1128/aac.35.3.594	1991
Enzymology	SYBR green real-time PCR method to detect Clostridium botulinum type A.	Fenicia L, Anniballi F, De Medici D, Delibato E, Aureli P.	Appl Environ Microbiol	10.1128/aem.02234-06	2007
Pathogenicity	In vitro synergy studies with Clostridium difficile.	Bacon AE, McGrath S, Fekety R, Holloway WJ.	Antimicrob Agents Chemother	10.1128/aac.35.3.582	1991
	Rapid molecular characterization of Clostridium difficile and assessment of populations of C. difficile in stool specimens.	Wroblewski D, Hannett GE, Bopp DJ, Dumyati GK, Halse TA, Dumas NB, Musser KA.	J Clin Microbiol	10.1128/jcm.02498-08	2009
	In vitro enrofloxacin binding in human fecal slurries.	Ahn Y, Linder SW, Veach BT, Steve Yan S, Haydee Fernandez A, Pineiro SA, Cerniglia CE.	Regul Toxicol Pharmacol	10.1016/j.yrtph.2011.11.013	2012
Pathogenicity	Evaluation of anaerobic microdilution MIC results with the Prompt Inoculation System.	Mangels JI.	J Clin Microbiol	10.1128/jcm.25.6.1140-1142.1987	1987
	In vitro antibacterial activities of PD 131628, a new 1,8-naphthyridine anti-infective agent.	Cohen MA, Huband MD, Mailloux GB, Yoder SL, Roland GE, Domagala JM, Heifetz CL.	Antimicrob Agents Chemother	10.1128/aac.35.1.141	1991
Pathogenicity	Comparison of susceptibilities of anaerobic bacteria to cefmenoxime, ceftriaxone, and other antimicrobial compounds.	Pollock HM, Holt J, Murray C.	Antimicrob Agents Chemother	10.1128/aac.23.5.780	1983
Enzymology	Molecular cloning and nucleotide sequence of the alpha-toxin (phospholipase C) of Clostridium perfringens.	Titball RW, Hunter SE, Martin KL, Morris BC, Shuttleworth AD, Rubidge T, Anderson DW, Kelly DC.	Infect Immun	10.1128/iai.57.2.367-376.1989	1989
Pathogenicity	Simultaneous detection of Mycobacterium leprae and its susceptibility to dapsone using DNA heteroduplex analysis.	Williams DL, Pittman TL, Gillis TP, Matsuoka M, Kashiwabara Y.	J Clin Microbiol	10.1128/jcm.39.6.2083-2088.2001	2001
Pathogenicity	Effect of CO2 on susceptibilities of anaerobes to erythromycin, azithromycin, clarithromycin, and roxithromycin.	Spangler SK, Jacobs MR, Appelbaum PC.	Antimicrob Agents Chemother	10.1128/aac.38.2.211	1994
	Testing and validation of high density resequencing microarray for broad range biothreat agents detection.	Leski TA, Lin B, Malanoski AP, Wang Z, Long NC, Meador CE, Barrows B, Ibrahim S, Hardick JP, Aitichou M, Schnur JM, Tibbetts C, Stenger DA.	PLoS One	10.1371/journal.pone.0006569	2009
Pathogenicity	Antibacterial activity of the new glycopeptide antibiotic SKF104662.	Jorgensen JH, Redding JS, Maher LA.	Antimicrob Agents Chemother	10.1128/aac.33.4.560	1989
Pathogenicity	Evaluation of three broth disk methods for testing the susceptibility of anaerobic bacteria to imipenem.	Shungu DL, Weinberg E, Cerami AT.	J Clin Microbiol	10.1128/jcm.21.6.875-879.1985	1985
Cultivation	Chemically defined medium for growth and sporulation of Clostridium perfringens.	Ting MN, Fung DY.	Appl Microbiol	10.1128/am.24.5.755-759.1972	1972
Enzymology	Diversity of anaerobic microbes in spacecraft assembly clean rooms.	Probst A, Vaishampayan P, Osman S, Moissl-Eichinger C, Andersen GL, Venkateswaran K.	Appl Environ Microbiol	10.1128/aem.02167-09	2010
Pathogenicity	Fastidious anaerobe agar compared with Wilkins-Chalgren agar, brain heart infusion agar, and brucella agar for susceptibility testing of Fusobacterium species.	Brazier JS, Goldstein EJ, Citron DM, Ostovari MI.	Antimicrob Agents Chemother	10.1128/aac.34.11.2280	1990
	Identification and analysis of novel amino-acid sequence repeats in Bacillus anthracis str. Ames proteome using computational tools.	Hemalatha GR, Rao DS, Guruprasad L.	Comp Funct Genomics	10.1155/2007/47161	2007
	Bifidobacterial lipoglycan as a new cause for false-positive platelia Aspergillus enzyme-linked immunosorbent assay reactivity.	Mennink-Kersten MA, Ruegebrink D, Klont RR, Warris A, Gavini F, Op den Camp HJ, Verweij PE.	J Clin Microbiol	10.1128/jcm.43.8.3925-3931.2005	2005
Pathogenicity	In vitro susceptibility of anaerobic bacteria to ciprofloxacin (Bay o 9867).	Prabhala RH, Rao B, Marshall R, Bansal MB, Thadepalli H.	Antimicrob Agents Chemother	10.1128/aac.26.5.785	1984
Pathogenicity	Antibiotic susceptibility of black-pigmented Bacteroides isolates from the human oral cavity.	Laatsch LJ, Hohenfeldt PR, Kos WL.	Antimicrob Agents Chemother	10.1128/aac.22.4.698	1982
	Gas-liquid chromatographic analysis of cellular fatty acids for identification of gram-negative anaerobic bacilli.	Stoakes L, Kelly T, Schieven B, Harley D, Ramos M, Lannigan R, Groves D, Hussain Z.	J Clin Microbiol	10.1128/jcm.29.11.2636-2638.1991	1991
Pathogenicity	Comparison of agar dilution, microdilution, and disk elution methods for measuring the synergy of cefotaxime and its metabolite against anaerobes.	Smith JA, Henry D, Ngui-Yen J, Castell A, Coderre S.	J Clin Microbiol	10.1128/jcm.23.6.1104-1108.1986	1986
	Genotypic variation and stability of four variable-number tandem repeats and their suitability for discriminating strains of Mycobacterium leprae.	Truman R, Fontes AB, De Miranda AB, Suffys P, Gillis T.	J Clin Microbiol	10.1128/jcm.42.6.2558-2565.2004	2004
Pathogenicity	Inhibitor of Clostridium perfringens formed by heating sodium nitrite in a chemically defined medium.	Moran DM, Tannenbaum SR, Archer MC.	Appl Microbiol	10.1128/am.30.5.838-843.1975	1975
Pathogenicity	Susceptibility testing of anaerobic bacteria: evaluation of the redesigned (Version 96) bioMérieux ATB ANA device.	Dubreuil L, Houcke I, Singer E.	J Clin Microbiol	10.1128/jcm.37.6.1824-1828.1999	1999
Enzymology	Adaptation of a coculture technique to the Minitek anaerobe system.	Hussain Z, Lannigan R, Burger H, Groves D.	J Clin Microbiol	10.1128/jcm.21.4.645-646.1985	1985
Pathogenicity	Interaction of streptolysin O from Streptococcus pyogenes and theta-toxin from Clostridium perfringens with human fibroblasts.	Thelestam M, Mollby R.	Infect Immun	10.1128/iai.29.3.863-872.1980	1980
Genetics	Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.	Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.	J Mol Evol	10.1007/s00239-011-9441-8	2011
Pathogenicity	Oxyrase, a method which avoids CO2 in the incubation atmosphere for anaerobic susceptibility testing of antibiotics affected by CO2.	Spangler SK, Appelbaum PC.	J Clin Microbiol	10.1128/jcm.31.2.460-462.1993	1993
Metabolism	The putative drug efflux systems of the Bacillus cereus group.	Hassan KA, Fagerlund A, Elbourne LDH, Voros A, Kroeger JK, Simm R, Tourasse NJ, Finke S, Henderson PJF, Okstad OA, Paulsen IT, Kolsto AB.	PLoS One	10.1371/journal.pone.0176188	2017
Pathogenicity	Activity of cefazolin and two beta-lactamase inhibitors, clavulanic acid and sulbactam, against Bacteroides fragilis.	Fekete T, McGowen J, Cundy KR.	Antimicrob Agents Chemother	10.1128/aac.31.2.321	1987
Enzymology	Superoxide dismutase in anaerobes: survey.	Gregory EM, Moore WE, Holdeman LV.	Appl Environ Microbiol	10.1128/aem.35.5.988-991.1978	1978
Pathogenicity	Susceptibilities of Bacteroides and Fusobacterium spp. from foot rot in goats to 10 beta-lactam antibiotics.	Piriz Duran S, Valle Manzano J, Cuenca Valera R, Vadillo Machota S.	Antimicrob Agents Chemother	10.1128/aac.34.4.657	1990
Pathogenicity	Enhancement of bismuth antibacterial activity with lipophilic thiol chelators.	Domenico P, Salo RJ, Novick SG, Schoch PE, Van Horn K, Cunha BA.	Antimicrob Agents Chemother	10.1128/aac.41.8.1697	1997
Biotechnology	PCR and gene probe identification of botulinum neurotoxin A-, B-, E-, F-, and G-producing Clostridium spp. and evaluation in food samples.	Fach P, Gibert M, Griffais R, Guillou JP, Popoff MR.	Appl Environ Microbiol	10.1128/aem.61.1.389-392.1995	1995
Pathogenicity	Risk of development of in vitro resistance to amoxicillin, clarithromycin, and metronidazole in Helicobacter pylori.	Sorberg M, Hanberger H, Nilsson M, Bjorkman A, Nilsson LE.	Antimicrob Agents Chemother	10.1128/aac.42.5.1222	1998
Pathogenicity	In vitro activities of daptomycin (LY146032) and paldimycin (U-70,138F) against anaerobic gram-positive bacteria.	Chow AW, Cheng N.	Antimicrob Agents Chemother	10.1128/aac.32.5.788	1988
Pathogenicity	Differences in susceptibilities of species of the Bacteroides fragilis group to several beta-lactam antibiotics: indole production as an indicator of resistance.	Jenkins SG, Birk RJ, Zabransky RJ.	Antimicrob Agents Chemother	10.1128/aac.22.4.628	1982
Metabolism	Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads.	Tiirola MA, Wang H, Paulin L, Kulomaa MS.	Appl Environ Microbiol	10.1128/aem.68.9.4495-4501.2002	2002
	Protective role of intestinal flora against infection with Pseudomonas aeruginosa in mice: influence of antibiotics on colonization resistance.	Hentges DJ, Stein AJ, Casey SW, Que JU.	Infect Immun	10.1128/iai.47.1.118-122.1985	1985
	Characterization and Ecology of Carboxymethylcellulase-Producing Anaerobic Bacterial Communities Associated with the Intestinal Tract of the Pinfish, Lagodon rhomboides.	Stellwag EJ, Smith TD, Luczkovich JJ.	Appl Environ Microbiol	10.1128/aem.61.2.813-816.1995	1995
	PCR detection, characterization, and distribution of virulence genes in Aeromonas spp.	Kingombe CI, Huys G, Tonolla M, Albert MJ, Swings J, Peduzzi R, Jemmi T.	Appl Environ Microbiol	10.1128/aem.65.12.5293-5302.1999	1999
Genetics	Genomic insights that advance the species definition for prokaryotes.	Konstantinidis KT, Tiedje JM.	Proc Natl Acad Sci U S A	10.1073/pnas.0409727102	2005
Phylogeny	16S ribosomal DNA amplification for phylogenetic study.	Weisburg WG, Barns SM, Pelletier DA, Lane DJ.	J Bacteriol	10.1128/jb.173.2.697-703.1991	1991
	Rapid detection of Mycobacterium avium in stool samples from AIDS patients by immunomagnetic PCR.	Li Z, Bai GH, von Reyn CF, Marino P, Brennan MJ, Gine N, Morris SL.	J Clin Microbiol	10.1128/jcm.34.8.1903-1907.1996	1996
Enzymology	Evaluation of the ATB 32 A system for identification of anaerobic bacteria isolated from clinical specimens.	Looney WJ, Gallusser AJ, Modde HK.	J Clin Microbiol	10.1128/jcm.28.7.1519-1524.1990	1990
Pathogenicity	Comparison of anaerobic susceptibility results obtained by two methods of inoculum preparation.	Bourgault AM, Lamothe F.	J Clin Microbiol	10.1128/jcm.20.6.1060-1064.1984	1984
	Anaerobic sulfatase-maturating enzymes, first dual substrate radical S-adenosylmethionine enzymes.	Benjdia A, Subramanian S, Leprince J, Vaudry H, Johnson MK, Berteau O.	J Biol Chem	10.1074/jbc.m710074200	2008
Pathogenicity	Comparative activity of beta-lactamase inhibitors YTR 830, clavulanate, and sulbactam combined with beta-lactams against beta-lactamase-producing anaerobes.	Appelbaum PC, Jacobs MR, Spangler SK, Yamabe S.	Antimicrob Agents Chemother	10.1128/aac.30.5.789	1986
Pathogenicity	Preparing inoculum for susceptibility testing of anaerobes.	Swenson JM, Thornsberry C.	J Clin Microbiol	10.1128/jcm.19.3.321-325.1984	1984
Pathogenicity	Criteria for disk susceptibility tests and quality control guidelines for the cefoperazone-sulbactam combination.	Barry AL, Jones RN.	J Clin Microbiol	10.1128/jcm.26.1.13-17.1988	1988
Pathogenicity	Predicting the susceptibility of anaerobes to cefoperazone, cefotaxime, and cefoxitin with the thioglycolate broth disk procedure.	Zabransky RJ, Birk RJ, Kurzynski TA, Toohey KL.	J Clin Microbiol	10.1128/jcm.24.2.181-185.1986	1986
Metabolism	Comparison of compositions and metabolic activities of fecal microbiotas in young adults and in antibiotic-treated and non-antibiotic-treated elderly subjects.	Woodmansey EJ, McMurdo ME, Macfarlane GT, Macfarlane S.	Appl Environ Microbiol	10.1128/aem.70.10.6113-6122.2004	2004
Pathogenicity	Disk diffusion susceptibility testing of the Bacteroides fragilis group.	Horn R, Bourgault AM, Lamothe F.	Antimicrob Agents Chemother	10.1128/aac.31.10.1596	1987
Pathogenicity	Antibacterial activities and pharmacokinetics of E-4767 and E-5065, two new 8-chlorofluoroquinolones with a 7-azetidin ring substituent.	Gargallo-Viola D, Ferrer S, Tudela E, Robert M, Coll R, Roser R, Guinea J.	Antimicrob Agents Chemother	10.1128/aac.45.11.3113-3121.2001	2001
Pathogenicity	Effect of clavulanic acid on the activities of ten beta-lactam agents against members of the Bacteroides fragilis group.	Lamothe F, Auger F, Lacroix JM.	Antimicrob Agents Chemother	10.1128/aac.25.5.662	1984
Enzymology	Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe.	Tevere VJ, Hewitt PL, Dare A, Hocknell P, Keen A, Spadoro JP, Young KK.	J Clin Microbiol	10.1128/jcm.34.4.918-923.1996	1996
Pathogenicity	Antimicrobial resistance in human oral and intestinal anaerobic microfloras.	Stark CA, Edlund C, Sjostedt S, Kristensen G, Nord CE.	Antimicrob Agents Chemother	10.1128/aac.37.8.1665	1993
Pathogenicity	Antimicrobial susceptibilities of anaerobic bacteria isolated from female genital tract infections.	Hill GB, Ayers OM.	Antimicrob Agents Chemother	10.1128/aac.27.3.324	1985
Pathogenicity	In vitro and in vivo antibacterial activities of GV129606, a new broad-spectrum trinem.	Di Modugno E, Broggio R, Erbetti I, Lowther J.	Antimicrob Agents Chemother	10.1128/aac.41.12.2742	1997
Pathogenicity	Collaborative evaluation of the micro-media systems anaerobe susceptibility panel: comparisons with reference methods and test reproducibility.	Jones RN, Barry AL, Cotton JL, Sutter VL, Swenson JM.	J Clin Microbiol	10.1128/jcm.16.2.245-249.1982	1982
Phylogeny	DNA probes for the identification of Haemophilus ducreyi.	Parsons LM, Shayegani M, Waring AL, Bopp LH.	J Clin Microbiol	10.1128/jcm.27.7.1441-1445.1989	1989
Metabolism	Gingival crevicular fluid levels of clindamycin compared with its minimal inhibitory concentrations for periodontal bacteria.	Walker CB, Gordon JM, Cornwall HA, Murphy JC, Socransky SS.	Antimicrob Agents Chemother	10.1128/aac.19.5.867	1981
	Continuous quality improvement for introduction of automated blood culture instrument.	Alfa M, Sanche S, Roman S, Fiola Y, Lenton P, Harding G.	J Clin Microbiol	10.1128/jcm.33.5.1185-1191.1995	1995
Pathogenicity	Evaluation of the E test for susceptibility testing of anaerobic bacteria.	Citron DM, Ostovari MI, Karlsson A, Goldstein EJ.	J Clin Microbiol	10.1128/jcm.29.10.2197-2203.1991	1991
Pathogenicity	Comparative in vitro and in vivo activities of six new monofluoroquinolone and difluoroquinolone 3-carboxylic acids with a 7-azetidin ring substituent.	Gargallo-Viola D, Esteve M, Moros M, Coll R, Xicota MA, de Andres C, Roser R, Guinea J.	Antimicrob Agents Chemother	10.1128/aac.34.12.2318	1990
Enzymology	High levels of Gardnerella vaginalis detected with an oligonucleotide probe combined with elevated pH as a diagnostic indicator of bacterial vaginosis.	Sheiness D, Dix K, Watanabe S, Hillier SL.	J Clin Microbiol	10.1128/jcm.30.3.642-648.1992	1992
Pathogenicity	In vitro activities of three semisynthetic amide derivatives of teicoplanin, MDL 62208, MDL 62211, and MDL 62873.	Biavasco F, Lupidi R, Varaldo PE.	Antimicrob Agents Chemother	10.1128/aac.36.2.331	1992
Enzymology	Role of Bacteroides bivius beta-lactamase in beta-lactam susceptibility.	Lacroix JM, Lamothe F, Malouin F.	Antimicrob Agents Chemother	10.1128/aac.26.5.694	1984
Pathogenicity	Evaluation of broth disk elution methods for susceptibility testing of anaerobic bacteria with the newer beta-lactam antibiotics.	Jorgensen JH, Redding JS, Howell AW.	J Clin Microbiol	10.1128/jcm.23.3.545-550.1986	1986
Phylogeny	Electrophoretic study of Clostridium species.	Cato EP, Hash DE, Holdeman LV, Moore WE.	J Clin Microbiol	10.1128/jcm.15.4.688-702.1982	1982
	Clinical presentation of leptospirosis: a retrospective study of 34 patients admitted to a single institution in metropolitan France.	Jaureguiberry S, Roussel M, Brinchault-Rabin G, Gacouin A, Le Meur A, Arvieux C, Michelet C, Tattevin P.	Clin Microbiol Infect	10.1111/j.1469-0691.2005.01148.x	2005
Pathogenicity	Activity of a peptidyl prodrug, alafosfalin, against anaerobic bacteria.	Grappel SF, Giovenella AJ, Nisbet LJ.	Antimicrob Agents Chemother	10.1128/aac.27.6.961	1985
Pathogenicity	Clostridium perfringens-Opportunistic Foodborne Pathogen, Its Diversity and Epidemiological Significance.	Grenda T, Jarosz A, Sapala M, Grenda A, Patyra E, Kwiatek K.	Pathogens	10.3390/pathogens12060768	2023
	Predictive modeling and probabilistic risk assessment of Clostridium perfringens in hamburgers and sandwiches.	Choi YH, Park JH, Kang MS, Yoon Y, Ha SD, Kim HJ.	Food Sci Biotechnol	10.1007/s10068-021-01000-z	2021
	Clostridial Myonecrosis: A Comprehensive Review of Toxin Pathophysiology and Management Strategies.	Hussain H, Fadel A, Garcia E, Hernandez RJ, Saadoon ZF, Naseer L, Casmartino E, Hamad M, Schnepp T, Sarfraz R, Angly S, Jayakumar AR.	Microorganisms	10.3390/microorganisms12071464	2024
	Comparative efficacy of postbiotic, probiotic, and antibiotic against necrotic enteritis in broiler chickens.	Abd El-Ghany WA, Abdel-Latif MA, Hosny F, Alatfeehy NM, Noreldin AE, Quesnell RR, Chapman R, Sakai L, Elbestawy AR.	Poult Sci	10.1016/j.psj.2022.101988	2022
	Green Alternatives to Synthetic Antioxidants, Antimicrobials, Nitrates, and Nitrites in Clean Label Spanish Chorizo.	Martinez L, Bastida P, Castillo J, Ros G, Nieto G.	Antioxidants (Basel)	10.3390/antiox8060184	2019
	Epidemiologic profile of community-acquired Clostridioides difficile infections: a systematic review and meta-analysis.	Alvarez-Villalobos NA, Ruiz-Hernandez FG, Mendez-Arellano AC, Azamar-Marquez JM, Camacho-Ortiz A.	Epidemiol Infect	10.1017/s0950268825000202	2025
Pathogenicity	Expansion of the Clostridium perfringens toxin-based typing scheme.	Rood JI, Adams V, Lacey J, Lyras D, McClane BA, Melville SB, Moore RJ, Popoff MR, Sarker MR, Songer JG, Uzal FA, Van Immerseel F.	Anaerobe	10.1016/j.anaerobe.2018.04.011	2018
Enzymology	Poikilothermic Animals as a Previously Unrecognized Source of Fecal Indicator Bacteria in a Backwater Ecosystem of a Large River.	Frick C, Vierheilig J, Linke R, Savio D, Zornig H, Antensteiner R, Baumgartner C, Bucher C, Blaschke AP, Derx J, Kirschner AKT, Ryzinska-Paier G, Mayer R, Seidl D, Nadiotis-Tsaka T, Sommer R, Farnleitner AH.	Appl Environ Microbiol	10.1128/aem.00715-18	2018
	Risk Factors of Patients With Diarrhea for Having Clostridioides (Clostridium) difficile Infection.	Lang V, Gunka K, Ortlepp JR, Zimmermann O, Gross U.	Front Microbiol	10.3389/fmicb.2022.840846	2022
Enzymology	Simple lysis of bacterial cells for DNA-based diagnostics using hydrophilic ionic liquids.	Martzy R, Bica-Schroder K, Palvolgyi AM, Kolm C, Jakwerth S, Kirschner AKT, Sommer R, Krska R, Mach RL, Farnleitner AH, Reischer GH.	Sci Rep	10.1038/s41598-019-50246-5	2019
Enzymology	Occurrence of human-associated Bacteroidetes genetic source tracking markers in raw and treated wastewater of municipal and domestic origin and comparison to standard and alternative indicators of faecal pollution.	Mayer RE, Bofill-Mas S, Egle L, Reischer GH, Schade M, Fernandez-Cassi X, Fuchs W, Mach RL, Lindner G, Kirschner A, Gaisbauer M, Piringer H, Blaschke AP, Girones R, Zessner M, Sommer R, Farnleitner AH.	Water Res	10.1016/j.watres.2015.12.031	2016
	An update on the human and animal enteric pathogen Clostridium perfringens.	Kiu R, Hall LJ.	Emerg Microbes Infect	10.1038/s41426-018-0144-8	2018
Enzymology	Highly conserved alpha-toxin sequences of avian isolates of Clostridium perfringens.	Sheedy SA, Ingham AB, Rood JI, Moore RJ.	J Clin Microbiol	10.1128/jcm.42.3.1345-1347.2003	2004
	Further characterization of Cys-type and Ser-type anaerobic sulfatase maturating enzymes suggests a commonality in the mechanism of catalysis.	Grove TL, Ahlum JH, Qin RM, Lanz ND, Radle MI, Krebs C, Booker SJ.	Biochemistry	10.1021/bi400136u	2013
	Analysis of the phospholipase C gene of Clostridium perfringens KZ1340 isolated from Antarctic soil.	Kameyama K, Matsushita O, Katayama S, Minami J, Maeda M, Nakamura S, Okabe A.	Microbiol Immunol	10.1111/j.1348-0421.1996.tb03344.x	1996
	Recombinant Bacillus subtilis expressing the Clostridium perfringens alpha toxoid is a candidate orally delivered vaccine against necrotic enteritis.	Hoang TH, Hong HA, Clark GC, Titball RW, Cutting SM.	Infect Immun	10.1128/iai.00686-08	2008
	Clostridium difficile: epidemiology, diagnostic and therapeutic possibilities-a systematic review.	Kazanowski M, Smolarek S, Kinnarney F, Grzebieniak Z.	Tech Coloproctol	10.1007/s10151-013-1081-0	2014
	Characterisation of Clostridium difficile biofilm formation, a role for Spo0A.	Dawson LF, Valiente E, Faulds-Pain A, Donahue EH, Wren BW.	PLoS One	10.1371/journal.pone.0050527	2012
Enzymology	Differences in the carboxy-terminal (Putative phospholipid binding) domains of Clostridium perfringens and Clostridium bifermentans phospholipases C influence the hemolytic and lethal properties of these enzymes.	Jepson M, Howells A, Bullifent HL, Bolgiano B, Crane D, Miller J, Holley J, Jayasekera P, Titball RW.	Infect Immun	10.1128/iai.67.7.3297-3301.1999	1999
	Rapid expansion of the physical and genetic map of the chromosome of Clostridium perfringens CPN50.	Katayama S, Dupuy B, Garnier T, Cole ST.	J Bacteriol	10.1128/jb.177.19.5680-5685.1995	1995
Enzymology	An automated blood culture system: the detection of anaerobic bacteria using a Malthus Microbiological Growth Analyser.	McMaster JP, Barr JG, Campbell RR, Bennett RB, Smyth ET.	Ulster Med J		1985
	Promoter upstream bent DNA activates the transcription of the Clostridium perfringens phospholipase C gene in a low temperature-dependent manner.	Katayama S, Matsushita O, Jung CM, Minami J, Okabe A.	EMBO J	10.1093/emboj/18.12.3442	1999
Metabolism	Regulation of Clostridium perfringens alpha-toxin-activated phospholipase C in rabbit erythrocyte membranes.	Sakurai J, Ochi S, Tanaka H.	Infect Immun	10.1128/iai.62.2.717-721.1994	1994
Metabolism	Epitope mapping of the alpha-toxin of Clostridium perfringens.	Logan AJ, Williamson ED, Titball RW, Percival DA, Shuttleworth AD, Conlan JW, Kelly DC.	Infect Immun	10.1128/iai.59.12.4338-4342.1991	1991
Phylogeny	Lecithinase-negative variants of Clostridium perfringens; the identity of C. plagarum with C. perfringens.	Nakamura S, Sakurai M, Nishida S.	Can J Microbiol	10.1139/m76-221	1976
Pathogenicity	Contraction of the rat isolated aorta caused by Clostridium perfringens alpha toxin (phospholipase C): evidence for the involvement of arachidonic acid metabolism.	Fujii Y, Sakurai J.	Br J Pharmacol	10.1111/j.1476-5381.1989.tb11931.x	1989
	Molecular genetics and pathogenesis of Clostridium perfringens.	Rood JI, Cole ST.	Microbiol Rev	10.1128/mr.55.4.621-648.1991	1991
	Enterotoxic Clostridia: Clostridioides difficile Infections.	Mileto S, Das A, Lyras D.	Microbiol Spectr	10.1128/microbiolspec.gpp3-0015-2018	2019
Metabolism	Evidence for coupling of Clostridium perfringens alpha-toxin-induced hemolysis to stimulated phosphatidic acid formation in rabbit erythrocytes.	Sakurai J, Ochi S, Tanaka H.	Infect Immun	10.1128/iai.61.9.3711-3718.1993	1993
Metabolism	Variations in virulence and molecular biology among emerging strains of Clostridium difficile.	Hunt JJ, Ballard JD.	Microbiol Mol Biol Rev	10.1128/mmbr.00017-13	2013
Enzymology	Purification and characterization of Clostridium perfringens 120-kilodalton collagenase and nucleotide sequence of the corresponding gene.	Matsushita O, Yoshihara K, Katayama S, Minami J, Okabe A.	J Bacteriol	10.1128/jb.176.1.149-156.1994	1994
Pathogenicity	Excitatory effect of Clostridium perfringens alpha toxin on the rat isolated aorta.	Fujii Y, Nomura S, Oshita Y, Sakurai J.	Br J Pharmacol	10.1111/j.1476-5381.1986.tb10233.x	1986
Enzymology	Proteases of Clostridium botulinum. V. Studies on the serological relationship between proteases from Clostridium botulinum and other spore-forming bacteria.	Tjaberg TB, Fossum K.	Acta Vet Scand	10.1186/bf03547399	1973
	Clostridial toxins in neonatal necrotising enterocolitis.	Thomas DF, Fernie DS, Bayston R, Spitz L.	Arch Dis Child	10.1136/adc.59.3.270	1984
Biotechnology	A real-time PCR assay for the detection of Campylobacter jejuni in foods after enrichment culture.	Sails AD, Fox AJ, Bolton FJ, Wareing DR, Greenway DL.	Appl Environ Microbiol	10.1128/aem.69.3.1383-1390.2003	2003
	Safety and efficacy of Sacox^® microGranulate (salinomycin sodium) for chickens for fattening and chickens reared for laying.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Rychen G, Aquilina G, Azimonti G, Bampidis V, de Lourdes Bastos M, Bories G, Chesson A, Cocconcelli PS, Flachowsky G, Kolar B, Kouba M, Puente SL, Lopez-Alonso M, Mayo B, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Brantom P, Halle I, van Beelen P, Holczknecht O, Vettori MV, Gropp J.	EFSA J	10.2903/j.efsa.2017.4670	2017
Metabolism	Medium for toxin production by Clostridium perfringens in continuous culture.	Chou G.	Appl Microbiol	10.1128/am.21.5.794-798.1971	1971
Metabolism	Detection and quantification of functional genes of cellulose- degrading, fermentative, and sulfate-reducing bacteria and methanogenic archaea.	Pereyra LP, Hiibel SR, Prieto Riquelme MV, Reardon KF, Pruden A.	Appl Environ Microbiol	10.1128/aem.01285-09	2010
Phylogeny	Sensitive PCR-restriction fragment length polymorphism assay for detection and genotyping of Giardia duodenalis in human feces.	Amar CF, Dear PH, Pedraza-Diaz S, Looker N, Linnane E, McLauchlin J.	J Clin Microbiol	10.1128/jcm.40.2.446-452.2002	2002
	Safety and efficacy of Monimax^® (monensin sodium and nicarbazin) for turkeys for fattening.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Rychen G, Aquilina G, Azimonti G, Bampidis V, Bastos ML, Bories G, Chesson A, Cocconcelli PS, Flachowsky G, Kolar B, Kouba M, Lopez-Alonso M, Lopez Puente S, Mantovani A, Mayo B, Ramos F, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Brantom P, Halle I, van Beelen P, Holczknecht O, Vettori MV, Gropp J.	EFSA J	10.2903/j.efsa.2017.5094	2017
	Clostridium difficile toxins: mechanism of action and role in disease.	Voth DE, Ballard JD.	Clin Microbiol Rev	10.1128/cmr.18.2.247-263.2005	2005
Biotechnology	Detection of Klebsiella pneumoniae in Veterinary and Food Matrices Using Loop-Mediated Isothermal Amplification.	Bermudez-Fornos I, Cepeda A, Garrido-Maestu A, Lamas A.	Pathogens	10.3390/pathogens14030296	2025
	Antibacterial Activity of Crocus sativus L. Petals Extracts against Foodborne Pathogenic and Spoilage Microorganisms, with a Special Focus on Clostridia.	Primavilla S, Pagano C, Roila R, Branciari R, Ranucci D, Valiani A, Ricci M, Perioli L.	Life (Basel)	10.3390/life13010060	2022
	From Nature to Nurture: The Science and Applications of Snail Slime in Health and Beauty.	Rashad M, Sampo S, Cataldi A, Zara S.	J Cosmet Dermatol	10.1111/jocd.70002	2025
Phylogeny	Diversity of Clostridium perfringens toxin-genotypes from dairy farms.	Fohler S, Klein G, Hoedemaker M, Scheu T, Seyboldt C, Campe A, Jensen KC, Abdulmawjood A.	BMC Microbiol	10.1186/s12866-016-0812-6	2016
	A novel real-time PCR assay for specific detection of Brucella melitensis.	Kaden R, Ferrari S, Alm E, Wahab T.	BMC Infect Dis	10.1186/s12879-017-2327-7	2017
Metabolism	Photocatalytic disinfection using titanium dioxide: spectrum and mechanism of antimicrobial activity.	Foster HA, Ditta IB, Varghese S, Steele A.	Appl Microbiol Biotechnol	10.1007/s00253-011-3213-7	2011
	Antimicrobial photodynamic inactivation in nanomedicine: small light strides against bad bugs.	Yin R, Agrawal T, Khan U, Gupta GK, Rai V, Huang YY, Hamblin MR.	Nanomedicine (Lond)	10.2217/nnm.15.67	2015
	Impact of Heat Treatment on the Microbiological Quality of Frass Originating from Black Soldier Fly Larvae (Hermetia illucens).	Van Looveren N, Vandeweyer D, Van Campenhout L.	Insects	10.3390/insects13010022	2021
	Anti-infective properties of bacteriocins: an update.	Hammami R, Fernandez B, Lacroix C, Fliss I.	Cell Mol Life Sci	10.1007/s00018-012-1202-3	2013
	The novel immunobiotic Clostridium butyricum S-45-5 displays broad-spectrum antiviral activity in vitro and in vivo by inducing immune modulation.	Chathuranga K, Shin Y, Uddin MB, Paek J, Chathuranga WAG, Seong Y, Bai L, Kim H, Shin JH, Chang YH, Lee JS.	Front Immunol	10.3389/fimmu.2023.1242183	2023
Biotechnology	Lactobacillus brevis strains from fermented aloe vera survive gastroduodenal environment and suppress common food borne enteropathogens.	Kim YW, Jeong YJ, Kim AY, Son HH, Lee JA, Jung CH, Kim CH, Kim J.	PLoS One	10.1371/journal.pone.0090866	2014
	Natural Honey-Propolis Combinations with Health-Promoting Potential: Antibacterial Activity Against Foodborne Pathogens.	Sanchez-Martin V, Lopez-Parra MB, Iriondo-DeHond A, Wojdylo A, Michalska-Ciechanowska A, Haza AI, Morales P, Del Castillo MD.	Pharmaceuticals (Basel)	10.3390/ph18070988	2025
	Antimicrobial Effect of Simira ecuadorensis Extracts and Their Impact on Improving Shelf Life in Chicken and Fish Products.	Reyes JF, Diez AM, Melero B, Rovira J, Jaime I.	Foods	10.3390/foods11152352	2022
Genetics	Increased prevalence of pathogenic bacteria in the gut microbiota of infants at risk of developing celiac disease: The PROFICEL study.	Olivares M, Benitez-Paez A, de Palma G, Capilla A, Nova E, Castillejo G, Varea V, Marcos A, Garrote JA, Polanco I, Donat E, Ribes-Koninckx C, Calvo C, Ortigosa L, Palau F, Sanz Y.	Gut Microbes	10.1080/19490976.2018.1451276	2018
	Nutritional composition, heavy metal content and in vitro effect on the human gut microbiota of Talitrus saltator, an underutilized crustacean from the Atlantic coast.	Lopez-Santamarina A, Cardelle-Cobas A, Lamas A, Mondragon-Portocarrero A, Cepeda A, Miranda JM.	Front Nutr	10.3389/fnut.2022.943133	2022
Enzymology	Quantitative detection of Legionella pneumophila in water samples by immunomagnetic purification and real-time PCR amplification of the dotA gene.	Yanez MA, Carrasco-Serrano C, Barbera VM, Catalan V.	Appl Environ Microbiol	10.1128/aem.71.7.3433-3441.2005	2005
	Gut microbiota composition in male rat models under different nutritional status and physical activity and its association with serum leptin and ghrelin levels.	Queipo-Ortuno MI, Seoane LM, Murri M, Pardo M, Gomez-Zumaquero JM, Cardona F, Casanueva F, Tinahones FJ.	PLoS One	10.1371/journal.pone.0065465	2013
Phylogeny	Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study.	Murri M, Leiva I, Gomez-Zumaquero JM, Tinahones FJ, Cardona F, Soriguer F, Queipo-Ortuno MI.	BMC Med	10.1186/1741-7015-11-46	2013
Enzymology	Characterization of Rosa canina Fruits Collected in Urban Areas of Slovakia. Genome Size, iPBS Profiles and Antioxidant and Antimicrobial Activities.	Rovna K, Ivanisova E, Ziarovska J, Ferus P, Terentjeva M, Kowalczewski PL, Kacaniova M.	Molecules	10.3390/molecules25081888	2020
Pathogenicity	In Vitro Selective Growth-Inhibitory Effect of 8-Hydroxyquinoline on Clostridium perfringens versus Bifidobacteria in a Medium Containing Chicken Ileal Digesta.	Skrivanova E, Van Immerseel F, Hovorkova P, Kokoska L.	PLoS One	10.1371/journal.pone.0167638	2016
	Bee Bread as a Promising Source of Bioactive Molecules and Functional Properties: An Up-To-Date Review.	Bakour M, Laaroussi H, Ousaaid D, El Ghouizi A, Es-Safi I, Mechchate H, Lyoussi B.	Antibiotics (Basel)	10.3390/antibiotics11020203	2022
Pathogenicity	Assessment of Chemical Impact of Invasive Bryozoan Pectinatella magnifica on the Environment: Cytotoxicity and Antimicrobial Activity of P. magnifica Extracts.	Kollar P, Smejkal K, Salmonova H, Vlkova E, Lepsova-Skacelova O, Balounova Z, Rajchard J, Cvacka J, Jasa L, Babica P, Pazourek J.	Molecules	10.3390/molecules21111476	2016
	Biological Activity of Essential Oils of Four Juniper Species and Their Potential as Biopesticides.	Semerdjieva I, Zheljazkov VD, Radoukova T, Dincheva I, Piperkova N, Maneva V, Astatkie T, Kacaniova M.	Molecules	10.3390/molecules26216358	2021
	Insights into the Mechanism of Action of Bactericidal Lipophosphonoxins.	Panova N, Zbornikova E, Simak O, Pohl R, Kolar M, Bogdanova K, Vecerova R, Seydlova G, Fiser R, Hadravova R, Sanderova H, Vitovska D, Sikova M, Latal T, Lovecka P, Barvik I, Krasny L, Rejman D.	PLoS One	10.1371/journal.pone.0145918	2015
	An autopsy case of gas gangrene, massive intravascular hemolysis, and cytokine storm due to Clostridium perfringens type A infection.	Hara A, Minaga K, Otsuka Y, Masuta Y, Nakamura Y, Kajiyama H, Park AM, Kudo M, Watanabe T.	IDCases	10.1016/j.idcr.2024.e02085	2024
	In vitro competition with Bifidobacterium strains impairs potentially pathogenic growth of Clostridium perfringens on 2'-fucosyllactose.	Nakajima A, Arzamasov AA, Sakanaka M, Murakami R, Kozakai T, Yoshida K, Katoh T, Ojima MN, Hirose J, Nagao S, Xiao JZ, Odamaki T, Rodionov DA, Katayama T.	Gut Microbes	10.1080/19490976.2025.2478306	2025
	The effect of culturing temperature on the growth of the most dominant bacterial species of human gut microbiota and harmful bacterial species.	Shimokawa H, Sakakibara H, Ami Y, Hirano R, Kurihara S.	Biosci Microbiota Food Health	10.12938/bmfh.2024-087	2025
Genetics	The estrobolome: Estrogen-metabolizing pathways of the gut microbiome and their relation to breast cancer.	Larnder AH, Manges AR, Murphy RA.	Int J Cancer	10.1002/ijc.35427	2025
	Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes.	Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N.	Eng Microbiol	10.1016/j.engmic.2024.100147	2024
Biotechnology	Simultaneous quantification of multiple food- and waterborne pathogens by use of microfluidic quantitative PCR.	Ishii S, Segawa T, Okabe S.	Appl Environ Microbiol	10.1128/aem.00205-13	2013
Enzymology	Rapid and simple method for detecting the toxin B gene of Clostridium difficile in stool specimens by loop-mediated isothermal amplification.	Kato H, Yokoyama T, Kato H, Arakawa Y.	J Clin Microbiol	10.1128/jcm.43.12.6108-6112.2005	2005
	Intestinal Bacteria as Powerful Trapping Lifeforms for the Elimination of Radioactive Cesium.	Saito K, Kuroda K, Suzuki R, Kino Y, Sekine T, Shinoda H, Yamashiro H, Fukuda T, Kobayashi J, Abe Y, Nishimura J, Urushihara Y, Yoneyama H, Fukumoto M, Isogai E.	Front Vet Sci	10.3389/fvets.2019.00070	2019
Pathogenicity	In-laboratory quality control of nutrients for automatic bacteriology analyzer YUNON(R)Labstar 50.	Boronina LG, Samatova EV, Kukushkina MP, Panova SA, Ustyugova SS	Klin Lab Diagn	10.51620/0869-2084-2021-66-2-110-114	2021
Phylogeny	Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa.	Lone A, Mottawea W, Ait Chait Y, Hammami R	Microorganisms	10.3390/microorganisms9010166	2021
Phylogeny	Biodiversity and Phylogenetic Relationships of Novel Bacteriocinogenic Strains Isolated from Animal's Droppings at the Zoological Garden of Lille, France.	Eveno M, Salouhi A, Belguesmia Y, Bazinet L, Gancel F, Fliss I, Drider D	Probiotics Antimicrob Proteins	10.1007/s12602-020-09657-4	2021
Phylogeny	Antibiotic resistance, genome analysis and further safe traits of Clostridium perfringens ICVB082; a strain capable of producing an inhibitory compound directed only against a closely related pathogenic strain.	Vieco-Saiz N, Belguesmia Y, Vachee A, Le Marechal C, Salvat G, Drider D	Anaerobe	10.1016/j.anaerobe.2020.102177	2020
Pathogenicity	beta-Lactam resistance development affects binding of penicillin-binding proteins (PBPs) of Clostridium perfringens to the fluorescent penicillin, BOCILLIN FL.	Park M, Sutherland JB, Rafii F	Anaerobe	10.1016/j.anaerobe.2020.102179	2020
Phylogeny	Capsular Polysaccharide Is a Receptor of a Clostridium perfringens Bacteriophage CPS1.	Ha E, Chun J, Kim M, Ryu S	Viruses	10.3390/v11111002	2019
	Galleria mellonella Infection Model Identifies Both High and Low Lethality of Clostridium perfringens Toxigenic Strains and Their Response to Antimicrobials.	Kay S, Edwards J, Brown J, Dixon R	Front Microbiol	10.3389/fmicb.2019.01281	2019
Pathogenicity	[A study on clinical application of a novel reagent detecting toxigenic strains of Clostridium difficile].	Wang SM, Wang ZY	Zhonghua Yi Xue Za Zhi	10.3760/cma.j.issn.0376-2491.2018.48.013	2018
Biotechnology	Evaluation of Lactobacillus plantarum encapsulated with Eleutherine americana oligosaccharide extract as food additive in yoghurt.	Phoem AN, Mayiding A, Saedeh F, Permpoonpattana P	Braz J Microbiol	10.1007/s42770-018-0017-2	2018
	Inhibition of Clostridium perfringens using Bacteriophages and Bacteriocin Producing Strains.	Heo S, Kim MG, Kwon M, Lee HS, Kim GB	Korean J Food Sci Anim Resour	10.5851/kosfa.2018.38.1.88	2018
Enzymology	Enzymatic Synthesis of 6'-Sialyllactose, a Dominant Sialylated Human Milk Oligosaccharide, by a Novel exo-alpha-Sialidase from Bacteroides fragilis NCTC9343.	Guo L, Chen X, Xu L, Xiao M, Lu L	Appl Environ Microbiol	10.1128/AEM.00071-18	2018
Metabolism	Structural characterization of wall and lipidated polysaccharides from Clostridium perfringens ATCC 13124.	Vinogradov E, Aubry A, Logan SM	Carbohydr Res	10.1016/j.carres.2017.06.003	2017
Pathogenicity	Effect of continuous sub-culturing on infectivity of Clostridium perfringens ATCC13124 in mouse gas gangrene model.	Kumar RB, Alam SI	Folia Microbiol (Praha)	10.1007/s12223-017-0503-1	2017
Enzymology	Exposure to beta-lactams results in the alteration of penicillin-binding proteins in Clostridium perfringens.	Park M, Rafii F	Anaerobe	10.1016/j.anaerobe.2017.02.004	2017
Stress	Effect of Trehalose and Trehalose Transport on the Tolerance of Clostridium perfringens to Environmental Stress in a Wild Type Strain and Its Fluoroquinolone-Resistant Mutant.	Park M, Mitchell WJ, Rafii F	Int J Microbiol	10.1155/2016/4829716	2016
Enzymology	Efficient and Regioselective Synthesis of beta-GalNAc/GlcNAc-Lactose by a Bifunctional Transglycosylating beta-N-Acetylhexosaminidase from Bifidobacterium bifidum.	Chen X, Xu L, Jin L, Sun B, Gu G, Lu L, Xiao M	Appl Environ Microbiol	10.1128/AEM.01325-16	2016
Metabolism	Putative function of hypothetical proteins expressed by Clostridium perfringens type A strains and their protective efficacy in mouse model.	Alam SI, Dwivedi P	Infect Genet Evol	10.1016/j.meegid.2016.06.040	2016
Pathogenicity	Ex vivo pharmacokinetic/pharmacodynamic relationship of valnemulin against Clostridium perfringens in plasma, the small intestinal and caecal contents of rabbits.	Zhou YF, Yu Y, Sun J, Tao MT, Zhou WJ, Li X, Liao XP, Liu YH	Anaerobe	10.1016/j.anaerobe.2016.04.005	2016
Metabolism	The Details of Glycolipid Glycan Hydrolysis by the Structural Analysis of a Family 123 Glycoside Hydrolase from Clostridium perfringens.	Noach I, Pluvinage B, Laurie C, Abe KT, Alteen MG, Vocadlo DJ, Boraston AB	J Mol Biol	10.1016/j.jmb.2016.03.020	2016
Enzymology	Cloning, characterization, and production of three alpha-L-fucosidases from Clostridium perfringens ATCC 13124.	Fan S, Zhang H, Chen X, Lu L, Xu L, Xiao M	J Basic Microbiol	10.1002/jobm.201500582	2015
Genetics	Identification of a Bacteria-Specific Binding Protein from the Sequenced Bacterial Genome.	Kong M, Ryu S	J Microbiol Biotechnol	10.4014/jmb.1510.10056	2016
Biotechnology	Changes in microbial community during biohydrogen production using gamma irradiated sludge as inoculum.	Yin Y, Wang J	Bioresour Technol	10.1016/j.biortech.2015.10.027	2015
Enzymology	Comparative analysis of extractable proteins from Clostridium perfringens type A and type C strains showing varying degree of virulence.	Dwivedi P, Alam SI, Kumar O, Kumar RB	Anaerobe	10.1016/j.anaerobe.2015.07.006	2015
	Screening of Bacteriocin-producing Enterococcus faecalis Strains for Antagonistic Activities against Clostridium perfringens.	Han SK, Shin MS, Park HE, Kim SY, Lee WK	Korean J Food Sci Anim Resour	10.5851/kosfa.2014.34.5.614	2014
Pathogenicity	Inhibition of Clostridium perfringens growth by potassium lactate during an extended cooling of cooked uncured ground turkey breasts.	Kennedy KM, Milkowski AL, Glass KA	J Food Prot	10.4315/0362-028X.JFP-13-106	2013
Pathogenicity	Growth-Inhibiting and morphostructural effects of constituents identified in Asarum heterotropoides root on human intestinal bacteria.	Perumalsamy H, Jung MY, Hong SM, Ahn YJ	BMC Complement Altern Med	10.1186/1472-6882-13-245	2013
Pathogenicity	Effect of fluoroquinolone resistance selection on the fitness of three strains of Clostridium perfringens.	Park M, Sutherland JB, Kim JN, Rafii F	Microb Drug Resist	10.1089/mdr.2013.0056	2013
Pathogenicity	A recombinant carboxy-terminal domain of alpha-toxin protects mice against Clostridium perfringens.	Nagahama M, Oda M, Kobayashi K, Ochi S, Takagishi T, Shibutani M, Sakurai J	Microbiol Immunol	10.1111/1348-0421.12036	2013
Pathogenicity	Comparative transcription analysis and toxin production of two fluoroquinolone-resistant mutants of Clostridium perfringens.	Park S, Park M, Rafii F	BMC Microbiol	10.1186/1471-2180-13-50	2013
Metabolism	Structural analysis of CPF_2247, a novel alpha-amylase from Clostridium perfringens.	Ficko-Blean E, Stuart CP, Boraston AB	Proteins	10.1002/prot.23116	2011
Enzymology	Lytic enzyme discovery through multigenomic sequence analysis in Clostridium perfringens.	Schmitz JE, Ossiprandi MC, Rumah KR, Fischetti VA	Appl Microbiol Biotechnol	10.1007/s00253-010-2982-8	2010
Pathogenicity	Comparison of a nontoxic variant of Clostridium perfringens alpha-toxin with the toxic wild-type strain.	Vachieri SG, Clark GC, Alape-Giron A, Flores-Diaz M, Justin N, Naylor CE, Titball RW, Basak AK	Acta Crystallogr D Biol Crystallogr	10.1107/S090744491003369X	2010
Enzymology	Comparative proteomic analysis of extracellular proteins of Clostridium perfringens type A and type C strains.	Sengupta N, Alam SI, Kumar B, Kumar RB, Gautam V, Kumar S, Singh L	Infect Immun	10.1128/IAI.00374-10	2010
Pathogenicity	Virulence for chickens of Clostridium perfringens isolated from poultry and other sources.	Cooper KK, Theoret JR, Stewart BA, Trinh HT, Glock RD, Songer JG	Anaerobe	10.1016/j.anaerobe.2010.02.006	2010
Metabolism	Differential proteomic analysis of Clostridium perfringens ATCC13124; identification of dominant, surface and structure associated proteins.	Alam SI, Bansod S, Kumar RB, Sengupta N, Singh L	BMC Microbiol	10.1186/1471-2180-9-162	2009
Metabolism	Characterization of two putative fibronectin-binding proteins of Clostridium perfringens.	Katayama S, Nozu N, Okuda M, Hirota S, Yamasaki T, Hitsumoto Y	Anaerobe	10.1016/j.anaerobe.2009.03.001	2009
Proteome	Immunization against Clostridium perfringens cells elicits protection against Clostridium tetani in mouse model: identification of cross-reactive proteins using proteomic methodologies.	Alam SI, Bansod S, Singh L	BMC Microbiol	10.1186/1471-2180-8-194	2008
	Use of gamma-irradiation to reduce Clostridium perfringens on ready-to-eat bovine tripe.	Parry-Hanson A, Hall A, Minnaar A, Buys EM	Meat Sci	10.1016/j.meatsci.2007.06.010	2007
Enzymology	Identification of galacto-N-biose phosphorylase from Clostridium perfringens ATCC13124.	Nakajima M, Nihira T, Nishimoto M, Kitaoka M	Appl Microbiol Biotechnol	10.1007/s00253-007-1319-8	2008
Pathogenicity	Carbon catabolite repression of type IV pilus-dependent gliding motility in the anaerobic pathogen Clostridium perfringens.	Mendez M, Huang IH, Ohtani K, Grau R, Shimizu T, Sarker MR	J Bacteriol	10.1128/JB.01407-07	2007
Metabolism	Detection of fibronectin-binding proteins in Clostridium perfringens.	Katayama S, Nozu N, Yokoyama M, Hitsumoto Y	Acta Med Okayama	10.18926/AMO/30720	2006
Genetics	Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.	Myers GS, Rasko DA, Cheung JK, Ravel J, Seshadri R, DeBoy RT, Ren Q, Varga J, Awad MM, Brinkac LM, Daugherty SC, Haft DH, Dodson RJ, Madupu R, Nelson WC, Rosovitz MJ, Sullivan SA, Khouri H, Dimitrov GI, Watkins KL, Mulligan S, Benton J, Radune D, Fisher DJ, Atkins HS, Hiscox T, Jost BH, Billington SJ, Songer JG, McClane BA, Titball RW, Rood JI, Melville SB, Paulsen IT	Genome Res	10.1101/gr.5238106	2006
Enzymology	Cloning, recombinant production, crystallization and preliminary X-ray diffraction studies of a family 84 glycoside hydrolase from Clostridium perfringens.	Ficko-Blean E, Boraston AB	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309105024012	2005
Metabolism	Inhibition of Clostridium perfringens by a novel strain of Bacillus subtilis isolated from the gastrointestinal tracts of healthy chickens.	Teo AY, Tan HM	Appl Environ Microbiol	10.1128/AEM.71.8.4185-4190.2005	2005
Cultivation	Susceptibility of Clostridium perfringens to C-C fatty acids.	Skrivanova E, Marounek M, Dlouha G, Kanka J	Lett Appl Microbiol	10.1111/j.1472-765X.2005.01709.x	2005
Pathogenicity	Growth inhibition of intestinal bacteria and mutagenicity of 2-, 3-, 4-aminobiphenyls, benzidine, and biphenyl.	Chung KT, Adris P	Toxicol In Vitro	10.1016/s0887-2333(02)00131-5	2003
Pathogenicity	Activity of endodontic antibacterial agents against selected anaerobic bacteria.	Ferreira CM, da Silva Rosa OP, Torres SA, Ferreira FB, Bernardinelli N	Braz Dent J	10.1590/s0103-64402002000200008	2002
Pathogenicity	In vitro effect of intracanal medicaments on strict anaerobes by means of the broth dilution method.	Rosa OP, Torres SA, Ferreira CM, Ferreira FB	Pesqui Odontol Bras	10.1590/s1517-74912002000100006	2002
Pathogenicity	Bactericidal properties of the chloroform fraction from rhizomes of Aristolochia paucinervis Pomel.	Gadhi CA, Hatier R, Mory F, Marchal L, Weber M, Benharref A, Jana M, Lozniewski A	J Ethnopharmacol	10.1016/s0378-8741(01)00185-4	2001
Cultivation	An effective lacticin biopreservative in fresh pork sausage.	Scannell AG, Ross RP, Hill C, Arendt EK	J Food Prot	10.4315/0362-028x-63.3.370	2000
Enzymology	A Clostridium perfringens hem gene cluster contains a cysG(B) homologue that is involved in cobalamin biosynthesis.	Koyama M, Katayama S, Kaji M, Taniguchi Y, Matsushita O, Minami J, Morita S, Okabe A	Microbiol Immunol	10.1111/j.1348-0421.1999.tb03355.x	1999
Phylogeny	Crystallization and preliminary X-ray diffraction studies of alpha-toxin from two different strains (NCTC8237 and CER89L43) of Clostridium perfringens.	Basak AK, Howells A, Eaton JT, Moss DS, Naylor CE, Miller J, Titball RW	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444998005186	1998
Phylogeny	Evaluation of the synergistic haemolysis (CAMP-like) test in the identification of motile, mesophilic Aeromonas species.	Gubash SM	Zentralbl Bakteriol	10.1016/s0934-8840(97)80073-4	1997
Genetics	Collagenase gene (colA) is located in the 3'-flanking region of the perfringolysin O (pfoA) locus in Clostridium perfringens.	Ohtani K, Bando M, Swe T, Banu S, Oe M, Hayashi H, Shimizu T	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb10186.x	1997
Phylogeny	Improved isolation of Clostridium perfringens from foal faeces.	Netherwood T, Chanter N, Mumford JA	Res Vet Sci	10.1016/s0034-5288(96)90090-9	1996
Metabolism	Characterization of a toxin-deficient Clostridium perfringens strain, KZ1340.	Shimizu T, Ohtani K, Ba-Thein W, Inui S, Nakamura S, Hayashi H	Microbiol Immunol	10.1111/j.1348-0421.1996.tb03329.x	1996
Pathogenicity	Molecular variation between the alpha-toxins from the type strain (NCTC 8237) and clinical isolates of Clostridium perfringens associated with disease in man and animals.	Ginter A, Williamson ED, Dessy F, Coppe P, Bullifent H, Howells A, Titball RW	Microbiology (Reading)	10.1099/13500872-142-1-191	1996
Enzymology	Diversity in the properties of two sialidase isoenzymes produced by Clostridium perfringens spp.	Roggentin P, Kleineidam RG, Schauer R	Biol Chem Hoppe Seyler	10.1515/bchm3.1995.376.9.569	1995
Phylogeny	Synthesis and evaluation of a non-radioactive gene probe for the detection of C.perfringens alpha toxin.	Schlapp T, Blaha I, Bauerfeind R, Wieler LH, Schoepe H, Weiss R, Baljer G	Mol Cell Probes	10.1016/s0890-8508(95)80034-4	1995
Metabolism	Role of alpha-toxin in Clostridium perfringens infection determined by using recombinants of C. perfringens and Bacillus subtilis.	Ninomiya M, Matsushita O, Minami J, Sakamoto H, Nakano M, Okabe A	Infect Immun	10.1128/iai.62.11.5032-5039.1994	1994
Phylogeny	16S ribosomal DNA sequences of anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov.	Ezaki T, Li N, Hashimoto Y, Miura H, Yamamoto H	Int J Syst Bacteriol	10.1099/00207713-44-1-130	1994
Genetics	Comparison of the alpha-toxin genes of Clostridium perfringens type A and C strains: evidence for extragenic regulation of transcription.	Katayama S, Matsushita O, Minami J, Mizobuchi S, Okabe A	Infect Immun	10.1128/iai.61.2.457-463.1993	1993
Enzymology	Collagenase of Clostridium perfringens type A: degradation of human complement component C1q.	Wolf U, Bauer D, Traub WH	Zentralbl Bakteriol	10.1016/s0934-8840(11)80215-x	1991
Pathogenicity	Quality control criteria for testing the susceptibility of anaerobic bacteria to meropenem.	Zabransky RJ, Bayola-Mueller L, Jenkins SG, Pitkin DR, Schreckenberger PC, Celig DM, Spiegel CA	J Clin Microbiol	10.1128/jcm.28.12.2804-2805.1990	1990
Pathogenicity	Quality control guidelines for testing cefotetan in the reference agar dilution procedure for susceptibility testing of anaerobic bacteria.	Zabransky RJ, Bobey DG, Barry AL, Allen SD, Fuchs PC, Gerlach EH, Thornsberry C, Sheikh W, Jones RN	J Clin Microbiol	10.1128/jcm.27.1.190-191.1989	1989
Enzymology	Cloning and expression in Escherichia coli of the perfringolysin O (theta-toxin) gene from Clostridium perfringens and characterization of the gene product.	Tweten RK	Infect Immun	10.1128/iai.56.12.3228-3234.1988	1988
Cultivation	Growth curves of Clostridium perfringens in Schaedler and brain heart infusion broths.	Traub WH, Spohr M, Bauer D	Zentralbl Bakteriol Mikrobiol Hyg A	10.1016/s0176-6724(87)80035-4	1987
Cultivation	Evaluation of some commercial media for the cultivation and enumeration of Clostridium perfringens from the chick intestine.	Dafwang II, Ricke SC, Schaefer DM, Brotz PG, Sunde ML, Pringle DJ	Poult Sci	10.3382/ps.0660652	1987
Pathogenicity	Effect of antibiotics on toxin production and viability of Clostridium perfringens.	Stevens DL, Maier KA, Mitten JE	Antimicrob Agents Chemother	10.1128/AAC.31.2.213	1987
Enzymology	Inactivation of cefoxitin and moxalactam by Bacteroides bivius beta-lactamase.	Malouin F, Fijalkowski C, Lamothe F, Lacroix JM	Antimicrob Agents Chemother	10.1128/AAC.30.5.749	1986
Pathogenicity	Establishment of MICs of moxalactam for control and reference anaerobic organisms in agar dilution and microdilution techniques.	Sutter VL, Emmerman J, Randall E, Zabransky RJ, Birk RJ	Antimicrob Agents Chemother	10.1128/AAC.27.3.424	1985
Pathogenicity	Evaluation of broth microdilution susceptibility results for anaerobic organisms by use of a rapid direct colony inoculum.	Mangels JI, Lindberg LH	J Clin Microbiol	10.1128/jcm.21.2.269-272.1985	1985
Pathogenicity	Establishment of minimum inhibitory concentrations of cefoperazone for control and reference anaerobic organisms.	Zabransky RJ, Randall E, Sutter VL, Birk RJ, Westenfelder G, Emmerman J, Ghoneim AT	J Clin Microbiol	10.1128/jcm.17.4.711-714.1983	1983
Cultivation	Collaborative evaluation of a proposed reference dilution method of susceptibility testing of anaerobic bacteria.	Sutter VL, Barry AL, Wilkins TD, Zabransky RJ	Antimicrob Agents Chemother	10.1128/AAC.16.4.495	1979
Pathogenicity	Production of phospholipase C (alpha-toxin), haemolysins and lethal toxins by Clostridium perfringens types A to D.	Mollby R, Holme T, Nord CE, Smyth CJ, Wadstrom T	J Gen Microbiol	10.1099/00221287-96-1-137	1976
	Immunogenicity of a newly developed vaccine against Clostridium perfringens alpha-toxin in rabbits and cattle.	Saadh MJ, Lafi FF, Dahadha AA, Albannan MS	Vet World	10.14202/vetworld.2022.1617-1623	2022
	Clostridium massiliamazoniense sp. nov., New Bacterial Species Isolated from Stool Sample of a Volunteer Brazilian.	Dione N, Lo CI, Raoult D, Fenollar F, Fournier PE.	Curr Microbiol	10.1007/s00284-020-02099-9	2020
Genetics	Non-contiguous finished genome sequence and description of Clostridium ihumii sp. nov.	Merhej V, Pfleiderer A, Ramasamy D, Lagier JC, Michelle C, Raoult D, Fournier PE.	Stand Genomic Sci	10.1186/s40793-015-0025-x	2015

References

#428	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 756
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#42056	; Curators of the CIP;
#44424	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1795
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium perfringens (DSM 756, ATCC 13124, ATCC 19408)

Name and taxonomic classification

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@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
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428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	+	+	+	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	+	+	+	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	+	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-
428	-	+	+	+	+	+	+	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-