Clostridium perfringens S107 | Type strain | DSM 756, ATCC 13124, ATCC 19408, NCIB 6125, NCTC 6125, NCTC 8237, WDCM 00007, CCUG 1795, CIP 103409

Strain identifier

BacDive ID: 2631

Type strain:

Species: Clostridium perfringens

Strain Designation: S107

Culture col. no.: DSM 756, ATCC 13124, ATCC 19408, NCIB 6125, NCTC 6125, NCTC 8237, WDCM 00007, CCUG 1795, CIP 103409

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Clostridium perfringens S107 is an anaerobe, mesophilic human pathogen that produces toxins and was isolated from bovine.

toxin production
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	10-09-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Clostridia
	Order	Eubacteriales
	Family	Clostridiaceae
	Genus	Clostridium
	Species	Clostridium perfringens
	Full Scientific Name (PNU)	Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

Synonym

Bacillus perfringens

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #428]	Name of produced compound	haemolysins
[Ref.: #428]	Name of produced compound	lecithinase
[Ref.: #428]	Name of produced compound	lethal toxins
[Ref.: #428]	Name of produced compound	phospholipase C

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #428]	812	-	-	+	+/-	+	+	+	-	-	-	+	+	+	-	+	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #428]	834	-	-	+	-	+	+	+	-	-	-	+	+	-	-	+	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #428]	5999	-	+	+	+	+	+	+	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-
[Ref.: #428]	6068	-	+	+	+	-	+	-	-	-	+	+	+	-	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-

[Ref.: #428]	Oxygen tolerance	anaerobe
[Ref.: #44424]	Oxygen tolerance	anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #428]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), 37°C, anaerobic

[Ref.: #428]

Culture medium growth

[Ref.: #428]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #428]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a), 37°C, anaerobic

[Ref.: #428]

Culture medium growth

[Ref.: #428]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #428]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110), 37°C, anaerobic

[Ref.: #428]

Culture medium growth

[Ref.: #428]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #42056]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #42056]

Culture medium growth

[Ref.: #42056]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #428]	growth	37 ̊C
[Ref.: #42056]	growth	37 ̊C
[Ref.: #44424]	growth	37 ̊C

[Ref.: #428]	Temperature range	mesophilic
[Ref.: #42056]	Temperature range	mesophilic
[Ref.: #44424]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #428]

Sample type/isolated from

bovine

[Ref.: #44424]

Sample type/isolated from

Bovine

Isolation sources categories

#Host

#Mammals

#Bovinae (Cow, Cattle)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #428]	Pathogenicity (human)	yes
[Ref.: #428]	Pathogenicity (animal)	yes
[Ref.: #428]	Biosafety level	2	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #428]

GC-content

24.0 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens DNA for butyrate kinase and hydrogenase, complete cds	AB016775 ENA		3230	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens genes of hem operon, complete cds	AB017186 ENA		10665	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens rpsD, rpoA, rplQ genes for ribosomal protein S4, RNA polymerase alpha subunit, ribosomal protein L17, partial and complete cds	AB034247 ENA		1540	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens orf1, ptb, buk, hydA, orf5,orf6, orf7 genes for Orf1, phosphotransbutyrylase, butyrate kinase, hydrogenase, Orf5, Orf6, Orf7, complete and partial cds	AB035092 ENA		9033	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens dnaG and rpoD genes for DNA primase and RNA polymerase major sigma factor, partial and complete cds	AB055809 ENA		1178	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens rpoB, rpoC, ybxF, rpsL genes, complete and partial cds	AB055810 ENA		7827	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens gene for 16S rRNA, partial sequence, strain: ATCC 13124	AB075767 ENA	16S	1460	195103 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens colA gene for collagenase A, partial cds, strain: ATCC13124	AB477536 ENA		670	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens groEL gene for chaperonin GroEL, partial cds, strain: ATCC13124	AB477590 ENA		685	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens gyrB gene for DNA gyrase subunit B, partial cds, strain: ATCC13124	AB477644 ENA		735	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens nadA gene for quinolinate synthetase, partial cds, strain: ATCC13124	AB477698 ENA		689	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens pgk gene for phosphoglycerate kinase, partial cds, strain: ATCC13124	AB477752 ENA		681	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens plc gene for phosphplipase C alpha toxin, partial cds, strain: ATCC13124	AB477806 ENA		671	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens sigK gene for sporulation sigma factor SigK, partial cds, strain: ATCC13124	AB477860 ENA		589	1502 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens sodF gene for Mn/Fe superoxide dismutase, partial cds, strain: ATCC13124	AB477914 ENA		554	1502 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clostridium perfringens partial gapN gene for NADP-dependent non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase	AJ880321 ENA		708	195103 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 270 from Patent WO0123604	AX109537 ENA		829	1502 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 831 from Patent WO0123604	AX110098 ENA		456	1502 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clostridium perfringens strain ATCC 13124 triosephosphate isomerase (tpi) gene, partial cds	AY700146 ENA		494	195103 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Clostridium perfringens pbg gene for beta-galactosidase, complete cds	D49537 ENA		5531	1502 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Clostridium perfringens partial 16S rRNA gene, strain ATCC 13124	FM207095 ENA	16S	390	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 2095 from Patent WO2008142034	GM955141 ENA		312	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 8551 from Patent WO2008142034	GM961597 ENA		360	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 1757 from Patent WO2009037279	GN096976 ENA		1644	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 3283 from Patent WO2009037279	GN098502 ENA		1209	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 3828 from Patent WO2009037279	GN099047 ENA		990	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 5876 from Patent WO2009037279	GN101095 ENA		1278	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 7913 from Patent WO2009037279	GN103132 ENA		900	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 9131 from Patent WO2009037279	GN104350 ENA		1233	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 9922 from Patent WO2009037279	GN105141 ENA		1047	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 12666 from Patent WO2009037279	GN107885 ENA		1728	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 14974 from Patent WO2009037279	GN110193 ENA		990	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 316 from Patent WO2009037329	GN117420 ENA		1131	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 3783 from Patent WO2009037329	GN120887 ENA		1833	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 7532 from Patent WO2009037329	GN124636 ENA		699	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 8416 from Patent WO2009037329	GN125520 ENA		1470	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 9174 from Patent WO2009037329	GN126278 ENA		744	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 11841 from Patent WO2009037329	GN128945 ENA		1131	195103 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clostridium perfringens strain DSM 756 gyrase B (gyrB) gene, partial cds	GQ426103 ENA		1226	1502 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 1753 from Patent WO2009077611	HB438935 ENA		741	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 3213 from Patent WO2009077611	HB440395 ENA		741	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 1918 from Patent WO2010046221	HC744827 ENA		777	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	Sequence 10469 from Patent WO2010046221	HC753378 ENA		1233	195103 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Clostridium perfringens ATCC 13124 SRP RNA for signal recognition particle RNA	HG323484 ENA		268	195103 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Clostridium perfringens ATCC 13124 transfer-messenger mRNA Clost_perfr_13124, single chain mature transcript	HG788429 ENA		361	195103 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Clostridium perfringens strain DSM 756 16S ribosomal RNA gene, partial sequence	HQ012013 ENA	16S	933	1502 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	JP 2003511015-A/32: HIGHLY CONSERVED GENES AND THEIR USE TO GENERATE SPECIES-SPECIFIC, GENUS-SPECIFIC, FAMILY-SPECIFIC, GROUP-SPECIFIC AND UNIVERSAL NUCLEIC ACID PROBES AND AMPLIFICATION PRIMERS TO RAPIDLY DETECT AND IDENTIFY ALGAL, ARCHAEAL, BACTERIAL, FUNGAL AND PARASITICAL MICROOR-GANISMS FROM CLINICAL SPECIMENS FOR DIAGNOSIS	HV223030 ENA		841	195103 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	JP 2003511015-A/270: HIGHLY CONSERVED GENES AND THEIR USE TO GENERATE SPECIES-SPECIFIC, GENUS-SPECIFIC, FAMILY-SPECIFIC, GROUP-SPECIFIC AND UNIVERSAL NUCLEIC ACID PROBES AND AMPLIFICATION PRIMERS TO RAPIDLY DETECT AND IDENTIFY ALGAL, ARCHAEAL, BACTERIAL, FUNGAL AND PARASITICAL MICROOR-GANISMS FROM CLINICAL SPECIMENS FOR DIAGNOSIS	HV223268 ENA		829	195103 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	JP 2003511015-A/831: HIGHLY CONSERVED GENES AND THEIR USE TO GENERATE SPECIES-SPECIFIC, GENUS-SPECIFIC, FAMILY-SPECIFIC, GROUP-SPECIFIC AND UNIVERSAL NUCLEIC ACID PROBES AND AMPLIFICATION PRIMERS TO RAPIDLY DETECT AND IDENTIFY ALGAL, ARCHAEAL, BACTERIAL, FUNGAL AND PARASITICAL MICROOR-GANISMS FROM CLINICAL SPECIMENS FOR DIAGNOSIS	HV223829 ENA		456	195103 tax ID	*
[Ref.: #20218]	INSDC Sequence	C.perfringens pyruvoyl-dependent histidine decarboxylase (hdc), gene, complete cds	J02880 ENA		1117	1502 tax ID	*
[Ref.: #20218]	INSDC Sequence	Clostridium perfringens 16S ribosomal RNA	M59103 ENA	16S	1462	1502 tax ID	*
[Ref.: #20218]	INSDC Sequence	{16S/23S ribosomal DNA spacer region} [Clostridium perfringens, ATCC 13124, Genomic, 239 nt]	S51964 ENA	16S	239	1502 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	C.perfringens plc gene for phospholipase C upstream region containing bent DNA fragment	X62825 ENA		800	1502 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	C.perfringens NCTC8237 pbg, arcA, arcB genes	X97684 ENA		2645	1502 tax ID	*
[Ref.: #428]	complete genome, GenBank Genome project data	Clostridium perfringens ATCC 13124, complete genome	CP000246 ENA	WGS	3256683	195103 tax ID

Availability in culture collectionsStrain availability

[Ref.: #428]

Culture collection no.

DSM 756, ATCC 13124, ATCC 19408, NCIB 6125, NCTC 6125, NCTC 8237, WDCM 00007, CCUG 1795, CIP 103409

[Ref.: #428]

Strain history

<- NCIB <- NCTC <- D. McClean <- H. Schmidt, Marburg, Germany, S107 ("Clostridium welchii")

[Ref.: #20218]

Associated Passport(s) in StrainInfo

7948, 7940, 7941, 7951, 7952, 7953, 866259

References

#428	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 756

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42056 ; Curators of the CIP;
#44424 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1795
* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium perfringens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF