Clostridium perfringens CCUG 2037 is an anaerobe, mesophilic prokaryote that was isolated from Sheep.
anaerobe mesophilic genome sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Clostridiaceae |
| Genus Clostridium |
| Species Clostridium perfringens |
| Full scientific name Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 44465 | positive | growth | 37 | mesophilic |
| 44465 | Sample typeSheep |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 66792 | ASM2939295v1 assembly for Clostridium perfringens D NCTC8346 | complete | 107819 | 93.51 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 88.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 80.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 86.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 98.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 77.96 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 86.39 | yes |
| 125438 | aerobic | aerobicⓘ | no | 95.01 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 60.11 | no |
| 125438 | thermophilic | thermophileⓘ | no | 87.20 | no |
| 125438 | flagellated | motile2+ⓘ | no | 66.61 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Identification of a new Clostridium perfringens variant with a chromosomally encoded enterotoxin gene in a suspected persistent food poisoning outbreak in Eritrea. | Lahti P, Jaakkola K, Horman A, Heikinheimo A, Sovijarvi A, Korkeala H. | Front Microbiol | 10.3389/fmicb.2024.1459840 | 2024 | ||
| Phylogeny | Diversity of Clostridium perfringens toxin-genotypes from dairy farms. | Fohler S, Klein G, Hoedemaker M, Scheu T, Seyboldt C, Campe A, Jensen KC, Abdulmawjood A. | BMC Microbiol | 10.1186/s12866-016-0812-6 | 2016 | |
| Phylogeny | Identification of Clostridium species and DNA fingerprinting of Clostridium perfringens by amplified fragment length polymorphism analysis. | Keto-Timonen R, Heikinheimo A, Eerola E, Korkeala H. | J Clin Microbiol | 10.1128/jcm.01275-06 | 2006 | |
| Phylogeny | Genetic diversity of Clostridium perfringens type A isolates from animals, food poisoning outbreaks and sludge. | Johansson A, Aspan A, Bagge E, Baverud V, Engstrom BE, Johansson KE. | BMC Microbiol | 10.1186/1471-2180-6-47 | 2006 | |
| Humans as reservoir for enterotoxin gene--carrying Clostridium perfringens type A. | Heikinheimo A, Lindstrom M, Granum PE, Korkeala H. | Emerg Infect Dis | 10.3201/eid1211.060478 | 2006 | ||
| Phylogeny | Enumeration and isolation of cpe-positive Clostridium perfringens spores from feces. | Heikinheimo A, Lindstrom M, Korkeala H. | J Clin Microbiol | 10.1128/jcm.42.9.3992-3997.2004 | 2004 | |
| Phylogeny | Multiplex PCR assay for detection and identification of Clostridium botulinum types A, B, E, and F in food and fecal material. | Lindstrom M, Keto R, Markkula A, Nevas M, Hielm S, Korkeala H. | Appl Environ Microbiol | 10.1128/aem.67.12.5694-5699.2001 | 2001 | |
| Phylogeny | Genetic diversity and phylogenetic relationships of Clostridium perfringens strains isolated from mastitis and enteritis in Egyptian dairy farms. | Abo Elyazeed H, Elhariri M, Eldeen NE, Aziz DA, Elhelw R. | BMC Microbiol | 10.1186/s12866-024-03260-1 | 2024 | |
| Molecular characteristics and phylogenetic analysis of Clostridium perfringens from different regions in China, from 2013 to 2021. | Zhong JX, Zheng HR, Wang YY, Bai LL, Du XL, Wu Y, Lu JX. | Front Microbiol | 10.3389/fmicb.2023.1195083 | 2023 | ||
| Prevalence and multilocus sequence typing of Clostridium perfringens isolated from retail chicken products and diseased chickens in Tai'an region, China. | Xu W, Zhang H, Hu Z, Miao Z, Zhang Y, Wang H. | Vet Med Sci | 10.1002/vms3.616 | 2021 | ||
| Molecular Characterization of Clostridium perfringens Strains Isolated in Italy. | Forti K, Ferroni L, Pellegrini M, Cruciani D, De Giuseppe A, Crotti S, Papa P, Maresca C, Severi G, Marenzoni ML, Cagiola M. | Toxins (Basel) | 10.3390/toxins12100650 | 2020 | ||
| Prevalence and multilocus sequence typing of Clostridium perfringens isolated from 4 duck farms in Shandong province, China. | Xiu L, Liu Y, Wu W, Chen S, Zhong Z, Wang H. | Poult Sci | 10.1016/j.psj.2020.06.046 | 2020 | ||
| Clostridium perfringens epsilon toxin vaccine candidate lacking toxicity to cells expressing myelin and lymphocyte protein. | Morcrette H, Bokori-Brown M, Ong S, Bennett L, Wren BW, Lewis N, Titball RW. | NPJ Vaccines | 10.1038/s41541-019-0128-2 | 2019 | ||
| Clostridium perfringens epsilon toxin mutant Y30A-Y196A as a recombinant vaccine candidate against enterotoxemia. | Bokori-Brown M, Hall CA, Vance C, Fernandes da Costa SP, Savva CG, Naylor CE, Cole AR, Basak AK, Moss DS, Titball RW. | Vaccine | 10.1016/j.vaccine.2014.03.079 | 2014 | ||
| Pathogenicity | Evidence for a prepore stage in the action of Clostridium perfringens epsilon toxin. | Robertson SL, Li J, Uzal FA, McClane BA. | PLoS One | 10.1371/journal.pone.0022053 | 2011 | |
| Lethal effects of Clostridium perfringens epsilon toxin are potentiated by alpha and perfringolysin-O toxins in a mouse model. | Fernandez-Miyakawa ME, Jost BH, Billington SJ, Uzal FA. | Vet Microbiol | 10.1016/j.vetmic.2007.09.013 | 2008 | ||
| Enzymology | Lytic enzyme discovery through multigenomic sequence analysis in Clostridium perfringens. | Schmitz JE, Ossiprandi MC, Rumah KR, Fischetti VA. | Appl Microbiol Biotechnol | 10.1007/s00253-010-2982-8 | 2011 | |
| Enzymology | Targeted delivery of bleomycin to the brain using photo-chemical internalization of Clostridium perfringens epsilon prototoxin. | Hirschberg H, Zhang MJ, Gach HM, Uzal FA, Peng Q, Sun CH, Chighvinadze D, Madsen SJ. | J Neurooncol | 10.1007/s11060-009-9930-4 | 2009 | |
| Pathogenicity | Clostridium perfringens epsilon toxin increases the small intestinal permeability in mice and rats. | Goldstein J, Morris WE, Loidl CF, Tironi-Farinati C, McClane BA, Uzal FA, Fernandez Miyakawa ME. | PLoS One | 10.1371/journal.pone.0007065 | 2009 | |
| Enzymology | Prevalence of beta2-toxigenic Clostridium perfringens in horses with intestinal disorders. | Herholz C, Miserez R, Nicolet J, Frey J, Popoff M, Gibert M, Gerber H, Straub R. | J Clin Microbiol | 10.1128/jcm.37.2.358-361.1999 | 1999 | |
| Pathogenicity | Clostridium perfringens epsilon-toxin increases permeability of single perfused microvessels of rat mesentery. | Adamson RH, Ly JC, Fernandez-Miyakawa M, Ochi S, Sakurai J, Uzal F, Curry FE. | Infect Immun | 10.1128/iai.73.8.4879-4887.2005 | 2005 | |
| Metabolism | High-affinity binding of Clostridium perfringens epsilon-toxin to rat brain. | Nagahama M, Sakurai J. | Infect Immun | 10.1128/iai.60.3.1237-1240.1992 | 1992 | |
| Cloning and nucleotide sequencing of the Clostridium perfringens epsilon-toxin gene and its expression in Escherichia coli. | Hunter SE, Clarke IN, Kelly DC, Titball RW. | Infect Immun | 10.1128/iai.60.1.102-110.1992 | 1992 | ||
| Metabolism | Toxigenic characteristics of Clostridium perfringens type C in enterotoxemia of domestic animals. | Niilo L. | Can J Vet Res | 1987 | ||
| Anti-idiotypic antibody-induced protection against Clostridium perfringens type D. | Percival DA, Shuttleworth AD, Williamson ED, Kelly DC. | Infect Immun | 10.1128/iai.58.8.2487-2492.1990 | 1990 | ||
| Pathogenicity | Effect of Clostridium perfringens epsilon toxin on the cardiovascular system of rats. | Sakurai J, Nagahama M, Fujii Y. | Infect Immun | 10.1128/iai.42.3.1183-1186.1983 | 1983 | |
| Enzymology | Tryptophan content of Clostridium perfringens epsilon toxin. | Sakurai J, Nagahama M. | Infect Immun | 10.1128/iai.47.1.260-263.1985 | 1985 | |
| Enzymology | Identification and quantitation of mucosal and faecal desulfovibrios using real time polymerase chain reaction. | Fite A, Macfarlane GT, Cummings JH, Hopkins MJ, Kong SC, Furrie E, Macfarlane S. | Gut | 10.1136/gut.2003.031245 | 2004 | |
| Phylogeny | Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. | Bartosch S, Fite A, Macfarlane GT, McMurdo ME. | Appl Environ Microbiol | 10.1128/aem.70.6.3575-3581.2004 | 2004 | |
| Metabolism | Application of high-density DNA resequencing microarray for detection and characterization of botulinum neurotoxin-producing clostridia. | Vanhomwegen J, Berthet N, Mazuet C, Guigon G, Vallaeys T, Stamboliyska R, Dubois P, Kennedy GC, Cole ST, Caro V, Manuguerra JC, Popoff MR. | PLoS One | 10.1371/journal.pone.0067510 | 2013 | |
| Genomic Characterization of Piscicolin CM22 Produced by Carnobacterium maltaromaticum CM22 Strain Isolated from Salmon (Salmo salar). | Gonzalez-Gragera E, Garcia-Lopez JD, Teso-Perez C, Jimenez-Hernandez I, Peralta-Sanchez JM, Valdivia E, Montalban-Lopez M, Martin-Platero AM, Banos A, Martinez-Bueno M. | Probiotics Antimicrob Proteins | 10.1007/s12602-024-10316-1 | 2025 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #44465 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2037 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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