Clostridium perfringens (CCUG 6513, NCTC 11144)

Name: Clostridium perfringens (CCUG 6513, NCTC 11144)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141763

Type strain

Culture col. no. CCUG 6513 NCTC 11144

NCBI tax ID(s) 1502

Special Collections CCUG

Links

Clostridium perfringens CCUG 6513 is an anaerobe, mesophilic prokaryote that was isolated from Beef,food poisoning outbreak.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 52917

CCUG 6513,NCTC 11144

@ref 20215

Last LPSN update 2025-12-16 10:03:56

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium perfringens

Full scientific name Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

Synonyms (2)

"Bacillus perfringens"
"Clostridioides perfringens"

BacDive ID	Other strains from **Clostridium perfringens** (104)	Type strain
2631	C. perfringens S107, DSM 756, ATCC 13124, ATCC 19408, NCIB ... (type strain)
130925	C. perfringens D10, DSM 100947, NCTC 13170, WDCM 00201, ...
130924	C. perfringens MJJ0609-4-1, DSM 29991
2630	C. perfringens SM19b, DSM 628
2632	C. perfringens McClung 1988, BP6K, CCUG 35750, CIP 104612, ...
2633	C. perfringens DSM 2943, ATCC 25768, NCIB 10620
2634	C. perfringens C5, DSM 11778
2635	C. perfringens C8, DSM 11779
2636	C. perfringens C12, DSM 11780
2637	C. perfringens C33, DSM 11781
2638	C. perfringens C36, DSM 11782
2639	C. perfringens C42, DSM 11783
2640	C. perfringens 8239, C103, DSM 11784
2641	C. perfringens C186, DSM 11785
2642	C. perfringens C192, DSM 11786
2643	C. perfringens ES-MS 22, DSM 30770
2644	C. perfringens DSM 25589, VPI No.5
134383	C. perfringens 252, CIP 60.61
134433	C. perfringens 319.2000, CIP 106951
134565	C. perfringens CWC245, CIP 106464
134571	C. perfringens 3702/49, CIP 106516, ATCC 12915, NCTC 8359
134582	C. perfringens 132, CIP 106640
134596	C. perfringens 2882000, CIP 106939
134597	C. perfringens 4552000, CIP 106940
134598	C. perfringens 3232000, CIP 106942
134599	C. perfringens 3462000, CIP 106943
134627	C. perfringens 77.2000, CIP 106526
135320	C. perfringens CIP 60.19
135625	C. perfringens 2622 A, CIP 61.5
135929	C. perfringens 167/51, CIP 106515, ATCC 12919, NCTC 8678, ...
135938	C. perfringens 150, CIP 106894
135939	C. perfringens 3172000, CIP 106941
136396	C. perfringens CIP 105178
136465	C. perfringens CIP 105956, AIP 667-76
136487	C. perfringens CIP 106156, ATCC 27324, NCIMB 10748, CCUG ...
136536	C. perfringens 72.2000, CIP 106525
136541	C. perfringens C2823, CIP 106633
136547	C. perfringens 48899, CIP 106677
136548	C. perfringens 169, CIP 106904
136555	C. perfringens 3222000, CIP 106937
136563	C. perfringens 170, CIP 106903
136568	C. perfringens 3162000, CIP 106936
136569	C. perfringens 4692000, CIP 106944
136570	C. perfringens 72.2000, CIP 106946
137054	C. perfringens 117, CIP 106902
137142	C. perfringens CIP 60.60
137328	C. perfringens 2001036, CIP 106952
137329	C. perfringens 2001038, CIP 106953
138119	C. perfringens CIP 104880, ATCC 12917, NCTC 8239, CCUG 18370
138359	C. perfringens CWC238, CIP 106527
138373	C. perfringens 100, CIP 106888
138374	C. perfringens 101, CIP 106889
138375	C. perfringens 108, CIP 106890
138376	C. perfringens 124, CIP 106891
138377	C. perfringens 138, CIP 106892
138378	C. perfringens 146, CIP 106893
138384	C. perfringens 106, CIP 106901
138473	C. perfringens CIP 105568
138597	C. perfringens 4702000, CIP 106938
139291	C. perfringens CIP 106157, NCTC 8798, AIP 10201
139525	C. perfringens 281/50, CIP 110283, CCM 7176, ATCC 12916, ...
141458	C. perfringens CCUG 2035, NCTC 3110
141459	C. perfringens CCUG 2036, NCTC 3180, CECT 820
141460	C. perfringens CCUG 2037, NCTC 8346, CECT 821
141461	C. perfringens CCUG 2038, CECT 4110, ATCC 9856, NCTC 6719
143263	C. perfringens CCUG 18108
144106	C. perfringens CCUG 23083
146487	C. perfringens CCUG 31304
147279	C. perfringens CCUG 33277
147489	C. perfringens CCUG 33691
147722	C. perfringens CCUG 34085
147747	C. perfringens CCUG 34138
147970	C. perfringens CCUG 34598
147979	C. perfringens CCUG 34613
148253	C. perfringens CCUG 35110
148543	C. perfringens CCUG 35619
148944	C. perfringens CCUG 36620
148995	C. perfringens CCUG 36694
149024	C. perfringens CCUG 36741
149315	C. perfringens CCUG 37480
149354	C. perfringens CCUG 37568
149572	C. perfringens CCUG 37991
150006	C. perfringens CCUG 38829
150123	C. perfringens CCUG 39042
150183	C. perfringens CCUG 39212
150282	C. perfringens CCUG 39490
150576	C. perfringens CCUG 41642
150859	C. perfringens CCUG 42581 A
150860	C. perfringens CCUG 42581 B
150893	C. perfringens CCUG 42642
150905	C. perfringens CCUG 42684
151036	C. perfringens CCUG 43122
151270	C. perfringens CCUG 43593
152132	C. perfringens CCUG 45870
152872	C. perfringens CCUG 47829
152887	C. perfringens CCUG 47895
154898	C. perfringens CCUG 55613
155386	C. perfringens CCUG 57575
156004	C. perfringens CCUG 59984
158915	C. perfringens WCA-h-251-APC-2, DSM 106278
164822	C. perfringens JCM 3816, ATCC 3624, BCRC 13019
164823	C. perfringens JCM 3817, ATCC 3626, BCRC 10647, LMG 10468, ...
164824	C. perfringens JCM 3818, ATCC 3628, NCIMB 10662
164825	C. perfringens JCM 3819, ATCC 3629, BCRC 10914, NCIMB 10663

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
44904	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44904	anaerobe
125439	anaerobe	99.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	+	reduction	from API rID32A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	+	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
44904	-	+	+	+	-	+	+	-	+	+	+	+	-	-	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Meat

Isolation

44904

Sample typeBeef,food poisoning outbreak

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	52191_G01 assembly for Clostridium perfringens NCTC11144	contig	GCA_900447135	1502.487	1502	76.41

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Clostridium perfringens NCTC11144
NCBI: GCA_900447135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.80	no
125439	motility	BacteriaNetⓘ	yes	82.00	no
125439	gram_stain	BacteriaNetⓘ	positive	84.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium perfringens strain NCTC11144
PATRIC: 1502.487

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.56	no
125438	anaerobic	anaerobicⓘ	yes	85.83	no
125438	spore-forming	spore-formingⓘ	yes	73.47	no
125438	aerobic	aerobicⓘ	no	91.95	yes
125438	thermophilic	thermophileⓘ	no	94.82	yes
125438	flagellated	motile2+ⓘ	no	67.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential.	Abdel-Glil MY, Thomas P, Linde J, Busch A, Wieler LH, Neubauer H, Seyboldt C.	Sci Rep	10.1038/s41598-021-86148-8	2021
	Outbreaks of food poisoning attributed to lecithinase-negative Clostridium welchii.	Pinegar JA, Stringer MF.	J Clin Pathol	10.1136/jcp.30.5.491-b	1977

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44904	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 6513
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium perfringens (CCUG 6513, NCTC 11144)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900447135

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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