Strain identifier

BacDive ID: 164823

Type strain: No

Species: Clostridium perfringens

Strain history: ATCC 3626 <-- I. C. Hall.

NCBI tax ID(s): 1502 (species)

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General

@ref: 67770

BacDive-ID: 164823

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, toxin production

description: Clostridium perfringens JCM 3817 is a mesophilic bacterium that produces toxins and was isolated from Intestinal contents of lamb.

NCBI tax id

  • NCBI tax id: 1502
  • Matching level: species

strain history

  • @ref: 67770
  • history: ATCC 3626 <-- I. C. Hall.

doi: 10.13145/bacdive164823.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium perfringens
  • full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus perfringens

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium perfringens

full scientific name: Clostridium perfringens (Veillon and Zuber 1898) Hauduroy et al. 1937

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

compound production

@refcompound
67770haemolysins
67770lethal toxins

enzymes

  • @ref: 67770
  • value: phospholipase C
  • ec: 3.1.4.11

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Intestinal contents of lamb

taxonmaps

  • @ref: 69479
  • File name: preview.99_335.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_235;97_257;98_286;99_335&stattab=map
  • Last taxonomy: Clostridium perfringens subclade
  • 16S sequence: AB588015
  • Sequence Identity:
  • Total samples: 88326
  • soil counts: 3063
  • aquatic counts: 8762
  • animal counts: 75654
  • plant counts: 847

Sequence information

16S sequences

  • @ref: 67770
  • description: Clostridium perfringens gene for 16S ribosomal RNA, partial sequence, strain: JCM 3817
  • accession: AB588015
  • length: 1474
  • database: ena
  • NCBI tax ID: 1502

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Clostridium perfringens B str. ATCC 3626451754.5wgspatric451754
66792Clostridium perfringens type B - ATCC 3626641736146draftimg451754
67770Clostridium perfringens B str. ATCC 3626GCA_000171155contigncbi451754
66792Clostridium perfringens B ATCC 3626GCA_029393235completencbi451751

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno90.822no
gram-positiveyes94.523no
anaerobicyes97.822no
aerobicno96.571no
halophileno78.433no
spore-formingyes91.65no
glucose-fermentyes78.148no
thermophileno99.434yes
glucose-utilyes88.893no
motileno80.591no

External links

@ref: 67770

culture collection no.: JCM 3817, ATCC 3626, BCRC 10647, LMG 10468, NCIMB 10691

straininfo link

  • @ref: 114253
  • straininfo: 1961

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism9593138Isolation of nitrofurantoin-resistant mutants of nitroreductase-producing Clostridium sp. strains from the human intestinal tract.Rafii F, Hansen EB JrAntimicrob Agents Chemother10.1128/AAC.42.5.11211998Anti-Infective Agents, Urinary/metabolism/pharmacology, Bacterial Proteins/*metabolism, Clostridium/*drug effects/enzymology/isolation & purification/metabolism, Colony Count, Microbial, Drug Resistance, Microbial/physiology, Humans, Intestines/microbiology, Microbial Sensitivity Tests, Nitrofurantoin/metabolism/pharmacology, Nitroreductases/*metabolismEnzymology
Enzymology10071864Cloning and expression in Escherichia coli of an azoreductase gene from Clostridium perfringens and comparison with azoreductase genes from other bacteria.Rafii F, Coleman TJ Basic Microbiol10.1002/(SICI)1521-4028(199903)39:1<29::AID-JOBM29>3.0.CO;2-W1999Bacteria/enzymology, Bacteriophages/genetics, Cloning, Molecular, Clostridium perfringens/*enzymology/genetics, Coloring Agents/metabolism, Escherichia coli/*enzymology/*genetics, Genes, Bacterial, Humans, NADH, NADPH Oxidoreductases/*genetics/*metabolism, Nitroreductases, Nucleic Acid Hybridization, Polymerase Chain Reaction/methodsMetabolism
Pathogenicity23789809Effect of fluoroquinolone resistance selection on the fitness of three strains of Clostridium perfringens.Park M, Sutherland JB, Kim JN, Rafii FMicrob Drug Resist10.1089/mdr.2013.00562013Anti-Bacterial Agents/*pharmacology, Ciprofloxacin/*pharmacology, Clostridium perfringens/*drug effects/genetics/growth & development, Drug Resistance, Bacterial/genetics, Fluoroquinolones/*pharmacology, Gatifloxacin, Genetic Fitness/*drug effects, Microbial Sensitivity Tests, Microbial Viability/drug effects, Mutation, Norfloxacin/*pharmacology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
114253Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1961.1