Name: Gluconobacter oxydans DSM 50049
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 52

Type strain:

Species: Gluconobacter oxydans

Culture col. no.: DSM 50049, ATCC 621, CIP 104737, NCIB 7069, NRRL B-72, CCUG 18135, ATCC 33448, NCTC 7069, LMG 1673, NCTC 621, ATCC 23774, JCM 20429, ATCC 23773, BCRC 12581, CCM 1787, IAM 12137, IFO 3130, KCTC 2779, LMG 1400, NBRC 3130, NCIMB 6723, NCTC 6723, CIP 53.162, CCM 1783, IFO 3172, IMET 10507, LMG 1393, NCDO 2008, LMG 1402, LMG 1401, NCIMB 7069

Strain history: CIP <- 1953, ATCC, Gluconobacter oxydans suboxydans <- K.B. Raper, NRRL, Acetobacter suboxydans <- A.J. Kluyver

NCBI tax ID(s): 442 (species)

SI-ID 69

NRRL B-72, LMG 1393, ATCC 23774, ATCC 33448, ATCC 621, CCM 1783, CCUG 18135, CECT 360, DSM 50049, IAM 1829, IFO 12528, IFO 3172, IMET 10507, LMG 1401, LMG 1402, LMG 1484, LMG 1494, LMG 1673, NCDO 2008, NCIB 621, NCIB 7069, NCIB 8035, NCTC 621, NCTC 7069, NRRL B-755, VKM B-885, CIP 104737, NCIMB 621, NCIMB7069, NCIMB8035, CCUG19135, LMD 23.2, CIP 53.162, CCRC 10684, HAMBI 374, NCAIM B.01220, NCFB 2008, VTT E-75003, KCTC 1091, KCTC 2111, NBRC 12528, NBRC 3172, NCCB 23002, BCRC 10684, CCT 0552, IAM 3130, NCIM 2048, NCIM 2440, CDBB 1090, VTT E-97003, JCM 20289

Special Collections

Other strains from Gluconobacter oxydans

Section

Gluconobacter oxydans DSM 50049 is a Gram-negative, rod-shaped bacterium that was isolated from Beer.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter oxydans**
	Full Scientific Name (LPSN)	Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

	Synonym	Gluconobacter oxydans subsp. suboxydans
	Synonym	"Acetomonas* suboxydans"*
	Synonym	"Gluconobacter* industrius"*
	Synonym	"Bacterium* oxydans"*
	Synonym	"Gluconobacter* suboxydans"*
	Synonym	Gluconobacter uchimurae
	Synonym	"Bacterium* industrium"*
	Synonym	Gluconobacter oxydans subsp. industrius
	Synonym	Gluconobacter oxydans subsp. melanogenes
	Synonym	"Acetobacter* suboxydans"*
	Synonym	"Acetobacter* melanogenus"*

Information on morphological and physiological properties Morphology

[Ref.: #121486]	Gram stain	negative

[Ref.: #121486]	Cell shape	rod-shaped

[Ref.: #46762]

Incubation period

3-4 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12608]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #12608]

Culture medium growth

[Ref.: #12608]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12608]

Culture medium composition

expand / minimize

[Ref.: #37739]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #37739]

Culture medium growth

[Ref.: #37739]

Culture medium composition

expand / minimize

[Ref.: #121486]

Culture medium

CIP Medium 1

[Ref.: #121486]

Culture medium growth

[Ref.: #121486]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12608]	growth	26 °C
[Ref.: #37739]	growth	30 °C
[Ref.: #46762]	growth	25-30 °C
[Ref.: #67770]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #12608]

Name of produced compound

sorbose

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #46762]	7344	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #46762]	Sample type/isolated from	Beer
[Ref.: #46762]	Country	Netherlands
[Ref.: #46762]	Country ISO 3 Code	NLD
[Ref.: #46762]	Continent	Europe

[Ref.: #121486]	Sample type/isolated from	Other, Amstel beer
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Beverage
#Engineered	#Food production	#Fermented
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB178386 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12608]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121486]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 3130	AB178386	1409	GenBank ENA	442 tax ID
[Ref.: #124043]	Gluconobacter oxydans 16S rRNA, partial sequence.	AB003959	155	GenBank ENA	442 tax ID	*
[Ref.: #124043]	Gluconobacter oxydans DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3130.	AB163822	676	GenBank ENA	442 tax ID	*

[Ref.: #12608]

GC-content

62.9 mol%

Availability in culture collections External links

[Ref.: #12608]

Culture collection no.

DSM 50049, ATCC 621, CIP 104737, NCIB 7069, NRRL B-72, CCUG 18135, ATCC 33448, NCTC 7069, LMG 1673, NCTC 621, ATCC 23774, JCM 20429, ATCC 23773, BCRC 12581, CCM 1787, IAM 12137, IFO 3130, KCTC 2779, LMG 1400, NBRC 3130, NCIMB 6723, NCTC 6723, CIP 53.162, CCM 1783, IFO 3172, IMET 10507, LMG 1393, NCDO 2008, LMG 1402, LMG 1401, NCIMB 7069

[Ref.: #69736]	SI-ID 69	*
[Ref.: #69737]	SI-ID 343901	*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Electrodialytic bioproduction of xylonic acid in a bioreactor of supplied-oxygen intensification by using immobilized whole-cell Gluconobacter oxydans as biocatalyst.	Zhou X, Han J, Xu Y	Bioresour Technol	10.1016/j.biortech.2019.03.042	2019	*
Metabolism	Effects of 8 chemical and bacterial additives on the quality of corn silage.	Queiroz OC, Arriola KG, Daniel JL, Adesogan AT	J Dairy Sci	10.3168/jds.2013-6691	2013	*
Enzymology	Cloning of the xylitol dehydrogenase gene from Gluconobacter oxydans and improved production of xylitol from D-arabitol.	Sugiyama M, Suzuki S, Tonouchi N, Yokozeki K	Biosci Biotechnol Biochem	10.1271/bbb.67.584	2003	*
Metabolism	Novel enzymatic method for the production of xylitol from D-arabitol by Gluconobacter oxydans.	Suzuki S, Sugiyama M, Mihara Y, Hashiguchi K, Yokozeki K	Biosci Biotechnol Biochem	10.1271/bbb.66.2614	2002	*
Metabolism	Phosphoenolpyruvate carboxylation and aspartate synthesis in Acetobacter suboxydans.	Claus GW, Orcutt ML, Belly RT	J Bacteriol	10.1128/jb.97.2.691-696.1969	1969	*
Metabolism	Characterization of Two Dehydrogenases from Gluconobacter oxydans Involved in the Transformation of Patulin to Ascladiol.	Chan ETS, Zhu Y, Li XZ, Zhou T, Seah SYK	Toxins (Basel)	10.3390/toxins14070423	2022	*
	FINE STRUCTURE OF THE GRAM-NEGATIVE BACTERIUM ACETOBACTER SUBOXYDANS.	CLAUS GW, ROTH LE	J Cell Biol	10.1083/jcb.20.2.217	1964	*

References

#12608

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50049

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37739 ; Curators of the CIP;
#46762 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18135
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69736

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID69.1 )

#69737

#121486 Collection of Institut Pasteur ; Curators of the CIP; CIP 53.162

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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