Name: Gluconobacter oxydans I
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 48

Type strain:

Species: Gluconobacter oxydans

Strain Designation: I, 1

Variant: Isotype of BacDive ID 49 & 23496

Culture col. no.: DSM 3503, ATCC 19357, DSM 4494, IAM 14436, NCIB 9013, JCM 7642, CCM 3607, CCUG 18132, CIP 103106, DSM 7145, IFO 14819, LMG 1408, LMG 1589, NBRC 14819, NCIMB 9013, NRIC 1843

Strain history: CIP <- 1984, ATCC <- NCIB, Acetomonas oxydans <- J.G. Carr: strain 1

NCBI tax ID(s): 442 (species)

SI-ID 311027

LMG 1408, ATCC 19357, CCUG 18132, DSM 3503, LMG 1589, NCIB 9013, CIP 103106, IAM 14436, DSM 7145, JCM 7642, CCM 3607, IFO 14819, NCIMB 9013, LMD 75.5, NBRC 14819, NCCB 75005, ICMP 12533, BCC 7224, BCRC 12956, CCRC 12956, BCRC 14103, CCRC 14103, KCTC 12449, VTT E-89365, VTT E-97864, DSM 4494

Special Collections

Other strains from Gluconobacter oxydans

Section

Gluconobacter oxydans I is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from Beer.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter oxydans**
	Full Scientific Name (LPSN)	Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

	Synonym	"Acetobacter* suboxydans"*
	Synonym	"Gluconobacter* industrius"*
	Synonym	"Acetobacter* melanogenus"*
	Synonym	"Bacterium* industrium"*
	Synonym	Gluconobacter oxydans subsp. suboxydans
	Synonym	"Acetomonas* suboxydans"*
	Synonym	"Bacterium* oxydans"*
	Synonym	"Gluconobacter* suboxydans"*
	Synonym	Gluconobacter uchimurae
	Synonym	Gluconobacter oxydans subsp. industrius
	Synonym	Gluconobacter oxydans subsp. melanogenes

Information on morphological and physiological properties Morphology

[Ref.: #23244]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.833

[Ref.: #23244]	Cell shape	rod-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1399]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #1399]

Culture medium growth

[Ref.: #1399]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1399]

Culture medium composition

expand / minimize

[Ref.: #1399]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #1399]

Culture medium growth

[Ref.: #1399]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1399]

Culture medium composition

expand / minimize

[Ref.: #40524]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #40524]

Culture medium growth

[Ref.: #40524]

Culture medium composition

expand / minimize

[Ref.: #121484]

Culture medium

CIP Medium 1

[Ref.: #121484]

Culture medium growth

[Ref.: #121484]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1399]		growth	26 °C
[Ref.: #1399]		growth	25 °C
[Ref.: #23244]	inconsistent	growth	33 °C
[Ref.: #23244]	inconsistent	growth	34 °C
[Ref.: #23244]	no	growth	35 °C
[Ref.: #23244]	no	growth	37 °C
[Ref.: #40524]		growth	30 °C
[Ref.: #67770]		growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.486
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #23244]	NaCl		growth	0.5	%
[Ref.: #23244]	NaCl		growth	0.75	%
[Ref.: #23244]	NaCl		growth	1	%
[Ref.: #23244]	NaCl	inconsistent	growth	1.2	%
[Ref.: #23244]	NaCl	inconsistent	growth	1.4	%
[Ref.: #23244]	NaCl	no	growth	1.5	%
[Ref.: #23244]	NaCl	no	growth	2	%

[Ref.: #67770]

Observation

quinones: Q-10

[Ref.: #23244]	Name of tolerated compound	Glucose
[Ref.: #23244]	Tolerance percentage	10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23244]	acetamide ChEBI	-	hydrolysis
[Ref.: #23244]	esculin ChEBI	-	hydrolysis
[Ref.: #23244]	glucose ChEBI	+	builds acid from
[Ref.: #23244]	glucose ChEBI	+/-	growth
[Ref.: #23244]	lactose ChEBI	+	builds acid from
[Ref.: #23244]	maltose ChEBI	+	builds acid from
[Ref.: #23244]	mannitol ChEBI	+	builds acid from
[Ref.: #23244]	myo-inositol ChEBI	-	growth
[Ref.: #23244]	myo-inositol ChEBI	+	builds acid from
[Ref.: #23244]	ribitol ChEBI	+	builds acid from
[Ref.: #23244]	sorbitol ChEBI	+	builds acid from
[Ref.: #23244]	sucrose ChEBI	-	growth
[Ref.: #23244]	urea ChEBI	-	hydrolysis
[Ref.: #23244]	xylitol ChEBI	-	growth
[Ref.: #23244]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23244]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #23244]	acid phosphatase	+	3.1.3.2
[Ref.: #23244]	alkaline phosphatase	-	3.1.3.1
[Ref.: #23244]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #23244]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23244]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23244]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #23244]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23244]	beta-galactosidase	-	3.2.1.23
[Ref.: #23244]	beta-glucosidase	-	3.2.1.21
[Ref.: #23244]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23244]	cystine arylamidase	+	3.4.11.3
[Ref.: #23244]	Dnase	-
[Ref.: #23244]	esterase	+/-
[Ref.: #23244]	esterase lipase (C 8)	+
[Ref.: #23244]	leucine arylamidase	+	3.4.11.1
[Ref.: #23244]	lipase	-
[Ref.: #23244]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #23244]	phosphatidate phosphatase	+	3.1.3.4
[Ref.: #23244]	trypsin	+	3.4.21.4
[Ref.: #23244]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Beer

[Ref.: #121484]	Sample type/isolated from	Food, Beer

[Ref.: #1399]	Sample type/isolated from	Beer
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JF794027 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1399]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121484]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20591]	Gluconobacter oxydans gene for 16S rRNA	X73820	1476	GenBank ENA	442 tax ID
[Ref.: #20218]	Gluconobacter oxydans strain DSM 3503 16S ribosomal RNA gene, partial sequence	JF794027	1355	GenBank ENA	442 tax ID	*
[Ref.: #20218]	Gluconobacter oxydans genes for 16S rRNA, 16S-23S rRNA internal transcribed spacer and 23S rRNA, partial and complete sequence	AB162115	1162	GenBank ENA	442 tax ID	*
[Ref.: #20218]	Gluconobacter oxydans strain LMG 1408 16S ribosomal RNA gene, partial sequence	JF794026	1347	GenBank ENA	442 tax ID	*
[Ref.: #20218]	Gluconobacter oxydans DNA, 16S-23S rRNA ITS region. strain:NBRC 14819	AB111901	805	GenBank ENA	442 tax ID	*
[Ref.: #20218]	Gluconobacter oxydans DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 14819	AB163869	676	GenBank ENA	442 tax ID	*
[Ref.: #20218]	Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 14819	AB178433	1409	GenBank ENA	442 tax ID	*
[Ref.: #20218]	Gluconobacter oxydans 16S rRNA, partial sequence	AB003953	155	GenBank ENA	442 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter oxydans NBRC 14819	GCA_006539685	contig	GenBank ENA	442 tax ID
[Ref.: #67770]	Gluconobacter oxydans DSM 3503	GCA_004346605	contig	GenBank ENA	442 tax ID
[Ref.: #66792]	Gluconobacter oxydans LMG1408	GCA_015244575	contig	GenBank ENA	442 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans strain DSM 3503	442.16	wgs	PATRIC	442 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans strain LMG1408	442.42	wgs	PATRIC	442 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans strain NBRC 14819	442.19	wgs	PATRIC	442 tax ID	*

[Ref.: #22919]	GC-content	53-55 mol%
[Ref.: #67770]	GC-content	60.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	57.9 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter oxydans strain NBRC 14819 PATRIC: 442.19
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter oxydans strain DSM 3503 PATRIC: 442.16
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.833	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.871	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.486	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.627	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.442	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	61.619	no

Availability in culture collections External links

[Ref.: #1399]

Culture collection no.

DSM 3503, ATCC 19357, DSM 4494, IAM 14436, NCIB 9013, JCM 7642, CCM 3607, CCUG 18132, CIP 103106, DSM 7145, IFO 14819, LMG 1408, LMG 1589, NBRC 14819, NCIMB 9013, NRIC 1843

[Ref.: #69733]

SI-ID 311027

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Dihydroxyacetone production via heterogeneous biotransformations of crude glycerol.	Ripoll M, Jackson E, Trelles JA, Betancor L	J Biotechnol	10.1016/j.jbiotec.2021.08.011	2021	*
Phylogeny	Gluconobacter aidae sp. nov., an acetic acid bacterium isolated from tropical fruits in Thailand.	Yukphan P, Charoenyingcharoen P, Malimas S, Muramatsu Y, Nakagawa Y, Tanasupawat S, Yamada Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004292	2020	*
Metabolism	Characterization and inactivation of the membrane-bound polyol dehydrogenase in Gluconobacter oxydans DSM 7145 reveals a role in meso-erythritol oxidation.	Voss J, Ehrenreich A, Liebl W	Microbiology (Reading)	10.1099/mic.0.037598-0	2010	*
Phylogeny	Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions.	Yukphan P, Potacharoen W, Nakagawa Y, Tanticharoen M, Yamada Y	J Gen Appl Microbiol	10.2323/jgam.50.9	2004	*
Phylogeny	Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984.	Katsura K, Yamada Y, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1635	2002	*
Enzymology	Biochemical characterization and sequence analysis of the gluconate:NADP 5-oxidoreductase gene from Gluconobacter oxydans.	Klasen R, Bringer-Meyer S, Sahm H	J Bacteriol	10.1128/jb.177.10.2637-2643.1995	1995	*
	Incapability of Gluconobacter oxydans to produce tartaric acid.	Klasen R, Bringer-Meyer S, Sahm H	Biotechnol Bioeng	10.1002/bit.260400126	1992	*

References

#1399

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3503

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#20591

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4494

#22919

L E Fuentes-Ramírez, R Bustillos-Cristales, A Tapia-Hernández, T Jiménez-Salgado, E T Wang, E Martínez-Romero, J Caballero-Mellado: Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants.. IJSEM 51: 1305 - 1314 2001 ( DOI 10.1099/00207713-51-4-1305 , PubMed 11491326 )

#23244

Lori M. Mason, G. William Claus: Phenotypic Characteristics Correlated with Deoxyribonucleic Acid Sequence Similarities for Three Species of Gluconobacter: G. oxydans (Henneberg 1897) De Ley 1961, G. frateurii sp. nov., and G. asaii sp. nov.. IJSEM 39: 174 - 184 1989 ( DOI 10.1099/00207713-39-2-174 )

#40524 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69733

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311027.1 )

#121484 Collection of Institut Pasteur ; Curators of the CIP; CIP 103106
* These data were automatically processed and therefore are not curated

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Gluconobacter oxydans strain NBRC 14819

Gluconobacter oxydans strain DSM 3503

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