Name: Gluconobacter frateurii 40
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 53

Type strain:

Species: Gluconobacter frateurii

Strain Designation: 40

Culture col. no.: DSM 7146, ATCC 49207, IFO 3264, NBRC 3264

Strain history: <- ATCC <- G.W. Claus (IFO 3264) <- N.R. Palleroni <- IFO (Gluconobacter cerinus) <- K. Kondo, 40

NCBI tax ID(s): 38308 (species)

Other strains from Gluconobacter frateurii

G. frateurii CIP 104734, ATCC 12302, IFO 3260, ...
G. frateurii JCM 25109, NRIC 0289
G. frateurii JCM 25110, NRIC 0290
G. frateurii JCM 25111, NRIC 0291
G. frateurii JCM 25112, NRIC 0292

Section

Gluconobacter frateurii 40 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from strawberry.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter frateurii**
	Full Scientific Name (PNU)	Gluconobacter frateurii Mason and Claus 1989

Information on morphological and physiological properties Morphology

[Ref.: #23244]	Gram stain	negative
[Ref.: #23244]	Cell shape	rod-shaped

[Ref.: #23244]	Colony size	1 mm
[Ref.: #23244]	Colony color	cream

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3020]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #3020]

Culture medium growth

[Ref.: #3020]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #3020]

Culture medium composition

expand / minimize

[Ref.: #41283]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #41283]

Culture medium growth

[Ref.: #41283]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #3020]		growth	25 °C
[Ref.: #23244]		growth	33 °C
[Ref.: #23244]		growth	34 °C
[Ref.: #23244]	no	growth	35 °C
[Ref.: #23244]	no	growth	37 °C
[Ref.: #41283]		growth	30 °C

[Ref.: #3020]	Temperature range	mesophilic
[Ref.: #23244]	Temperature range	mesophilic
[Ref.: #41283]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #23244]	NaCl		growth	1	%
[Ref.: #23244]	NaCl	inconsistent	growth	1.2	%
[Ref.: #23244]	NaCl	inconsistent	growth	1.4	%
[Ref.: #23244]	NaCl		growth	0.5	%
[Ref.: #23244]	NaCl		growth	0.75	%
[Ref.: #23244]	NaCl	no	growth	1.5	%
[Ref.: #23244]	NaCl	no	growth	2	%

[Ref.: #23244]	Name of tolerated compound	Glucose
[Ref.: #23244]	Tolerance percentage	20

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23244]	acetamide ChEBI	-	hydrolysis
[Ref.: #23244]	acetate ChEBI	-	oxidation
[Ref.: #23244]	arabinitol ChEBI	+	carbon source
[Ref.: #23244]	esculin ChEBI	-	hydrolysis
[Ref.: #23244]	ethanol ChEBI	+	oxidation
[Ref.: #23244]	glucose ChEBI	+	builds acid from
[Ref.: #23244]	glucose ChEBI	+	growth
[Ref.: #23244]	lactate ChEBI	-	oxidation
[Ref.: #23244]	lactose ChEBI	+	builds acid from
[Ref.: #23244]	maltose ChEBI	+	builds acid from
[Ref.: #23244]	maltose ChEBI	+	growth
[Ref.: #23244]	mannitol ChEBI	+	builds acid from
[Ref.: #23244]	myo-inositol ChEBI	+	builds acid from
[Ref.: #23244]	myo-inositol ChEBI	+	growth
[Ref.: #23244]	ribitol ChEBI	+	builds acid from
[Ref.: #23244]	sorbitol ChEBI	+	builds acid from
[Ref.: #23244]	sucrose ChEBI	-	growth
[Ref.: #23244]	urea ChEBI	-	hydrolysis
[Ref.: #23244]	xylose ChEBI	+	builds acid from
[Ref.: #23244]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #23244]		2-dehydro-D-gluconate ChEBI
[Ref.: #23244]		hydrogen sulfide ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #23244]	acid phosphatase	+	3.1.3.2
[Ref.: #23244]	alkaline phosphatase	+/-	3.1.3.1
[Ref.: #23244]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #23244]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23244]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23244]	alpha-glucosidase	-	3.2.1.20
[Ref.: #23244]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23244]	beta-galactosidase	-	3.2.1.23
[Ref.: #23244]	beta-glucosidase	-	3.2.1.21
[Ref.: #23244]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23244]	cystine arylamidase	+	3.4.11.3
[Ref.: #23244]	Dnase	-
[Ref.: #23244]	esterase	-
[Ref.: #23244]	esterase lipase (C 8)	+
[Ref.: #23244]	leucine arylamidase	+	3.4.11.1
[Ref.: #23244]	lipase	-
[Ref.: #23244]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #23244]	phosphatidate phosphatase	+	3.1.3.4
[Ref.: #23244]	trypsin	+	3.4.21.4
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3020]	Sample type/isolated from	strawberry
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X82290 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	376
Soil Samples	546
Animal Samples	2369
Plant Samples	531
Total Samples	3822

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3020]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Gluconobacter frateurii strain LMG 1365 16S ribosomal RNA gene, partial sequence	JF794020	1347	ENA	38308 tax ID	*
[Ref.: #20218]	Gluconobacter frateurii DNA, 16S-23S rRNA ITS region. strain:NBRC 3264	AB111898	807	ENA	38308 tax ID	*
[Ref.: #20218]	Gluconobacter frateurii DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3264	AB163839	678	ENA	38308 tax ID	*
[Ref.: #20218]	Gluconobacter frateurii gene for 16S rRNA, partial sequence, strain:NBRC 3264	AB178403	1409	ENA	38308 tax ID	*
[Ref.: #3020]	G.frateurii 16S rRNA gene	X82290	1476	ENA	38308 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter frateurii NBRC 3264	GCA_002723955	contig	GenBank	38308 tax ID	*
[Ref.: #66792]	Gluconobacter frateurii strain NBRC 3264	38308.3	wgs	PATRIC	38308 tax ID	*
[Ref.: #66792]	Streptococcus equi subsp. equi EQUI0206	GCA_001177925	contig	PATRIC	148942 tax ID	*

Availability in culture collections External links

[Ref.: #3020]

Culture collection no.

DSM 7146, ATCC 49207, IFO 3264, NBRC 3264

[Ref.: #20218]

Associated Passport(s) in StrainInfo

160574, 11698, 11699, 371039

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Isolation and characterization of thermotolerant Gluconobacter strains catalyzing oxidative fermentation at higher temperatures.	Moonmangmee D, Adachi O, Ano Y, Shinagawa E, Toyama H, Theeragool G, Lotong N, Matsushita K	Biosci Biotechnol Biochem	10.1271/bbb.64.2306	2000	*
Phylogeny	Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984.	Katsura K, Yamada Y, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1635	2002	*
Phylogeny	Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions.	Yukphan P, Potacharoen W, Nakagawa Y, Tanticharoen M, Yamada Y	J Gen Appl Microbiol	10.2323/jgam.50.9	2004	*
Metabolism	D-hexosaminate production by oxidative fermentation.	Moonmangmee D, Adachi O, Toyama H, Matsushita K	Appl Microbiol Biotechnol	10.1007/s00253-004-1707-2	2004	*
Phylogeny	Heterogeneity of strains assigned to Gluconobacter frateurii Mason and Claus 1989 based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions.	Malimas T, Yukphan P, Takahashi M, Potacharoen W, Tanasupawat S, Nakagawa Y, Tanticharoen M, Yamada Y	Biosci Biotechnol Biochem	10.1271/bbb.70.684	2006	*
Enzymology	D-Allulose (D-Psicose) Biotransformation From Allitol by a Newly Found NAD(P)-Dependent Alcohol Dehydrogenase From Gluconobacter frateurii NBRC 3264 and the Enzyme Characterization.	Wen X, Lin H, Ning Y, Liu G, Ren Y, Li C, Zhang C, Lin J, Song X, Lin J	Front Microbiol	10.3389/fmicb.2022.870168	2022	*

References

#3020

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7146

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23244

Lori M. Mason, G. William Claus: Phenotypic Characteristics Correlated with Deoxyribonucleic Acid Sequence Similarities for Three Species of Gluconobacter: G. oxydans (Henneberg 1897) De Ley 1961, G. frateurii sp. nov., and G. asaii sp. nov.. IJSEM 39: 174 - 184 1989 ( DOI 10.1099/00207713-39-2-174 )

#41283 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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