Gluconobacter oxydans (CIP 104736, ATCC 9324, IFO 3171)

Name: Gluconobacter oxydans (CIP 104736, ATCC 9324, IFO 3171)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139194

Type strain

Culture col. no. CIP 104736 ATCC 9324 IFO 3171 NCTC 4739 NCIMB 4739 8 more

NCBI tax ID(s) 442

Special Collections JCM CIP

Links

Gluconobacter oxydans CIP 104736 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Acetobacteraceae.

Gram-negative rod-shaped obligate aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 2867

LMG 1377,ATCC 9324,CCM 2370,IAM 1815,IFO 3171,LMG 1397,LMG 1574,NCIB 4739,NCTC 4739,CIP 104736,NCIMB 4739,LMD 50.9,KCTC 2108,NBRC 3171,NCCB 50009,BCRC 10383,CCRC 10383,NRRL B-471,JCM 20277

@ref 20215

Last LPSN update 2025-12-16 10:03:16

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Gluconobacter

Species Gluconobacter oxydans

Full scientific name Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

Synonyms (11)

Gluconobacter oxydans subsp. suboxydans
"Gluconobacter industrius"
Gluconobacter oxydans subsp. melanogenes
"Acetomonas suboxydans"
"Bacterium oxydans"
"Gluconobacter suboxydans"
Gluconobacter uchimurae
Gluconobacter oxydans subsp. industrius
"Acetobacter suboxydans"
"Acetobacter melanogenus"
"Bacterium industrium"

BacDive ID	Other strains from **Gluconobacter oxydans** (23)	Type strain
48	G. oxydans I, 1, DSM 3503, ATCC 19357, DSM 4494, IAM ... (type strain)
46	G. oxydans DSM 2343, ATCC 621H, NCIB 8036, CIP 104215, ...
47	G. oxydans B 4099, DSM 2003, CN 1221
49	G. oxydans DSM 7145, ATCC 19357, NCIB 9013
50	G. oxydans DSM 46615, ATCC 12303, CCM 1804, IFO 3262, ...
51	G. oxydans No 27, Porges 27, DSM 46616, ATCC 9844, CCM ...
52	G. oxydans DSM 50049, ATCC 621, CIP 104737, NCIB 7069, ...
23496	G. oxydans DSM 4494, ATCC 19357, NCIB 9013
143264	G. oxydans CCUG 18134, ATCC 33447, LMG 1581
143265	G. oxydans CCUG 18136, ATCC 33446, LMG 1674
152146	G. oxydans CCUG 45891
155021	G. oxydans CCUG 56122
155022	G. oxydans CCUG 56123
162844	G. oxydans JCM 20282, IAM 1821, IFO 3293, LMG 1385, ...
162845	G. oxydans JCM 20283, BCRC 10384, IAM 1822, IFO 3294, ...
162851	G. oxydans JCM 20294, IAM 1839
162852	G. oxydans JCM 20295, IAM 1841
162853	G. oxydans JCM 20296, IAM 1842, LMG 1425
162920	G. oxydans JCM 20430, IAM 12138, IFO 3010, NBRC 3010
163101	G. oxydans JCM 21178, ATCC 11894, CCM 1769, IAM 14365, ...
163102	G. oxydans JCM 21179, ATCC 23772, IAM 14366, LMG 1399, ...
163103	G. oxydans JCM 21180, ATCC 23755, CCM 1795, IAM 14367, ...
163111	G. oxydans JCM 21218, ATCC 15164, IAM 14435, IFO 3243, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
41284	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
41284	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
41284	CIP Medium 1

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
41284	positive	growth	30	mesophilic
41284	negative	growth	5
41284	negative	growth	10
41284	negative	growth	37
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

41284

Oxygen toleranceobligate aerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
41284	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
41284	17632 ChEBI	nitrate	-	reduction
41284	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
41284	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
41284	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
41284	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
41284	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
41284	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
41284	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
41284	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
41284	ornithine decarboxylase	-	4.1.1.17
41284	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
41284	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
41284	-	-	+	+	-	+	+	+	+	+	+	+	-	-	-	-	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
41284	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AB178387 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	376
Soil Samples	546
Animal Samples	2369
Plant Samples	531
Total Samples	3822

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
41284	1	Risk group (French classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 3171	AB178387	1409		442
124043	Gluconobacter oxydans DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3171.	AB163823	678		442

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
On the way toward regulatable expression systems in acetic acid bacteria: target gene expression and use cases.	Fricke PM, Klemm A, Bott M, Polen T.	Appl Microbiol Biotechnol	10.1007/s00253-021-11269-z	2021
Distribution and genome structures of temperate phages in acetic acid bacteria.	Omata K, Hibi N, Nakano S, Komoto S, Sato K, Nunokawa K, Amano S, Ueda K, Takano H.	Sci Rep	10.1038/s41598-021-00998-w	2021
Purification and characterization of inducible cephalexin synthesizing enzyme in Gluconobacter oxydans.	Shiau CY, Pai SC, Lin WP, Ji DD, Liu YT	Biosci Biotechnol Biochem	10.1271/bbb.69.463	2005
Construction of a vector plasmid for use in Gluconobacter oxydans.	Tonouchi N, Sugiyama M, Yokozeki K	Biosci Biotechnol Biochem	10.1271/bbb.67.211	2003
Sequence analysis of the Gluconobacter oxydans RecA protein and construction of a recA-deficient mutant.	Liu YT, Chen CG, Chao DC, Lee F, Liao CL, Sytwu HK, Chou CF, Ji DD	Can J Microbiol		1999

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41284	Collection of Institut Pasteur ; Curators of the CIP; CIP 104736
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gluconobacter oxydans (CIP 104736, ATCC 9324, IFO 3171)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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