Name: Gluconobacter oxydans JCM 20283
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162845

Type strain:

Species: Gluconobacter oxydans

Culture col. no.: JCM 20283, BCRC 10384, IAM 1822, IFO 3294, LMG 1386, NBRC 3294

Strain history: IAM 1822 <-- T. Asai G-12 ("Gluconobacter melanogenus") <-- IFO 3294 <-- K. Kondo 11.

NCBI tax ID(s): 442 (species)

SI-ID 2937

LMG 1386, IAM 1822, IFO 3294, NBRC 3294, BCRC 10384, CCRC 10384, KCTC 12320, JCM 20283

Other strains from Gluconobacter oxydans

G. oxydans I, 1, DSM 3503, ATCC 19357, DSM ... (type strain)
G. oxydans DSM 2343, ATCC 621H, NCIB 8036, ...
G. oxydans B 4099, DSM 2003, CN 1221
G. oxydans DSM 7145, ATCC 19357, NCIB 9013
G. oxydans DSM 46615, ATCC 12303, CCM 1804, ...
G. oxydans No 27, Porges 27, DSM 46616, ATCC ...
G. oxydans DSM 50049, ATCC 621, CIP 104737, ...
G. oxydans DSM 4494, ATCC 19357, NCIB 9013
G. oxydans CIP 104736, ATCC 9324, IFO 3171, ...
G. oxydans CCUG 18134, ATCC 33447, LMG 1581
G. oxydans CCUG 18136, ATCC 33446, LMG 1674
G. oxydans CCUG 45891
G. oxydans CCUG 56122
G. oxydans CCUG 56123
G. oxydans JCM 20282, IAM 1821, IFO 3293, ...
G. oxydans JCM 20294, IAM 1839
G. oxydans JCM 20295, IAM 1841
G. oxydans JCM 20296, IAM 1842, LMG 1425
G. oxydans JCM 20430, IAM 12138, IFO 3010, ...
G. oxydans JCM 21178, ATCC 11894, CCM 1769, ...
G. oxydans JCM 21179, ATCC 23772, IAM 14366, ...
G. oxydans JCM 21180, ATCC 23755, CCM 1795, ...
G. oxydans JCM 21218, ATCC 15164, IAM 14435, ...

Section

Gluconobacter oxydans JCM 20283 is a mesophilic, Gram-negative bacterium that was isolated from Dried persimmon.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter oxydans**
	Full Scientific Name (LPSN)	Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

	Synonym	Gluconobacter oxydans subsp. suboxydans
	Synonym	"Acetomonas* suboxydans"*
	Synonym	"Gluconobacter* industrius"*
	Synonym	"Bacterium* oxydans"*
	Synonym	"Gluconobacter* suboxydans"*
	Synonym	Gluconobacter uchimurae
	Synonym	"Bacterium* industrium"*
	Synonym	Gluconobacter oxydans subsp. industrius
	Synonym	Gluconobacter oxydans subsp. melanogenes
	Synonym	"Acetobacter* suboxydans"*
	Synonym	"Acetobacter* melanogenus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %95.949

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Dried persimmon
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB178424 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 3294	AB178424	1409	ENA	442 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter oxydans LMG 1386	GCA_001580625	contig	GenBank	442 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans strain LMG 1386	442.5	wgs	PATRIC	442 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans LMG 1386	2724679585	draft	JGI IMG/M	442 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter oxydans strain LMG 1386 PATRIC: 442.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter oxydans strain LMG 1386 PATRIC: 442.5
[Ref.: #69480]	gram-positive	no	96.312	no
[Ref.: #69480]	anaerobic	no	99.02	no
[Ref.: #69480]	halophile	no	84.584	no
[Ref.: #69480]	spore-forming	no	96.243	no
[Ref.: #69480]	glucose-util	yes	89.571	no
[Ref.: #69480]	aerobic	yes	78.85	no
[Ref.: #69480]	flagellated	no	81.986	no
[Ref.: #69480]	thermophile	no	96.418	yes
[Ref.: #69480]	motile	yes	69.672	no
[Ref.: #69480]	glucose-ferment	no	86.368	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20283, BCRC 10384, IAM 1822, IFO 3294, LMG 1386, NBRC 3294

[Ref.: #113649]

SI-ID 2937

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113649

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2937.1 )

* These data were automatically processed and therefore are not curated

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Gluconobacter oxydans strain LMG 1386

Gluconobacter oxydans strain LMG 1386

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