Gluconobacter oxydans (NBRC 3294, LMG 1386, IFO 3294)

Name: Gluconobacter oxydans (NBRC 3294, LMG 1386, IFO 3294)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162845

Type strain

Culture col. no. NBRC 3294 LMG 1386 IFO 3294 IAM 1822 BCRC 10384 1 more

NCBI tax ID(s) 442

Special Collections JCM

History IAM 1822 <-- T. Asai G-12 ("Gluconobacter melanogenus") <-- IFO 3294 <-- K. Kondo 11.

Links

Gluconobacter oxydans JCM 20283 is a mesophilic prokaryote that was isolated from Dried persimmon.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 2937

LMG 1386,IAM 1822,IFO 3294,NBRC 3294,BCRC 10384,CCRC 10384,KCTC 12320,JCM 20283

@ref 20215

Last LPSN update 2025-12-16 10:09:05

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Gluconobacter

Species Gluconobacter oxydans

Full scientific name Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

Synonyms (11)

Gluconobacter oxydans subsp. suboxydans
"Gluconobacter industrius"
Gluconobacter oxydans subsp. melanogenes
"Acetomonas suboxydans"
"Bacterium oxydans"
"Gluconobacter suboxydans"
Gluconobacter uchimurae
Gluconobacter oxydans subsp. industrius
"Acetobacter suboxydans"
"Acetobacter melanogenus"
"Bacterium industrium"

BacDive ID	Other strains from **Gluconobacter oxydans** (23)	Type strain
48	G. oxydans I, 1, DSM 3503, ATCC 19357, DSM 4494, IAM ... (type strain)
46	G. oxydans DSM 2343, ATCC 621H, NCIB 8036, CIP 104215, ...
47	G. oxydans B 4099, DSM 2003, CN 1221
49	G. oxydans DSM 7145, ATCC 19357, NCIB 9013
50	G. oxydans DSM 46615, ATCC 12303, CCM 1804, IFO 3262, ...
51	G. oxydans No 27, Porges 27, DSM 46616, ATCC 9844, CCM ...
52	G. oxydans DSM 50049, ATCC 621, CIP 104737, NCIB 7069, ...
23496	G. oxydans DSM 4494, ATCC 19357, NCIB 9013
139194	G. oxydans CIP 104736, ATCC 9324, IFO 3171, NCTC 4739, ...
143264	G. oxydans CCUG 18134, ATCC 33447, LMG 1581
143265	G. oxydans CCUG 18136, ATCC 33446, LMG 1674
152146	G. oxydans CCUG 45891
155021	G. oxydans CCUG 56122
155022	G. oxydans CCUG 56123
162844	G. oxydans JCM 20282, IAM 1821, IFO 3293, LMG 1385, ...
162851	G. oxydans JCM 20294, IAM 1839
162852	G. oxydans JCM 20295, IAM 1841
162853	G. oxydans JCM 20296, IAM 1842, LMG 1425
162920	G. oxydans JCM 20430, IAM 12138, IFO 3010, NBRC 3010
163101	G. oxydans JCM 21178, ATCC 11894, CCM 1769, IAM 14365, ...
163102	G. oxydans JCM 21179, ATCC 23772, IAM 14366, LMG 1399, ...
163103	G. oxydans JCM 21180, ATCC 23755, CCM 1795, IAM 14367, ...
163111	G. oxydans JCM 21218, ATCC 15164, IAM 14435, IFO 3243, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.3
125438	negative	96.75

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98

Spore formation

@ref	Spore formation	Confidence
125439		97.4
125438		90.506

Isolation, sampling and environmental information

Isolation

67770

Sample typeDried persimmon

Taxonmaps

69479

Global distribution of 16S sequence AB178424 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM158062v1 assembly for Gluconobacter oxydans LMG 1386	contig	GCA_001580625	442.5	2724679585	442	73.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 3294	AB178424	1409		442
124043	Gluconobacter oxydans DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3294.	AB163860	688		442

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gluconobacter oxydans LMG 1386
NCBI: GCA_001580625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.40	no
125439	motility	BacteriaNetⓘ	yes	74.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gluconobacter oxydans strain LMG 1386
PATRIC: 442.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.75	no
125438	anaerobic	anaerobicⓘ	no	83.99	no
125438	spore-forming	spore-formingⓘ	no	90.51	no
125438	aerobic	aerobicⓘ	yes	81.15	no
125438	thermophilic	thermophileⓘ	no	97.27	yes
125438	flagellated	motile2+ⓘ	yes	60.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of a novel D-sorbitol dehydrogenase from Faunimonas pinastri A52C2.	Yu S, Li Y, Shi G, Xu S, Zhang L, Ding Z.	Appl Microbiol Biotechnol	10.1007/s00253-024-13381-2	2025
Enzymology	High-Throughput Screening of a 2-Keto-L-Gulonic Acid-Producing Gluconobacter oxydans Strain Based on Related Dehydrogenases.	Chen Y, Liu L, Shan X, Du G, Zhou J, Chen J.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00385	2019
Metabolism	NADPH-dependent L-sorbose reductase is responsible for L-sorbose assimilation in Gluconobacter suboxydans IFO 3291.	Shinjoh M, Tazoe M, Hoshino T.	J Bacteriol	10.1128/jb.184.3.861-863.2002	2002
Metabolism	L-sorbose reductase and its transcriptional regulator involved in L-sorbose utilization of Gluconobacter frateurii.	Soemphol W, Toyama H, Moonmangmee D, Adachi O, Matsushita K.	J Bacteriol	10.1128/jb.01895-06	2007
Enzymology	Cloning and nucleotide sequencing of the membrane-bound L-sorbosone dehydrogenase gene of Acetobacter liquefaciens IFO 12258 and its expression in Gluconobacter oxydans.	Shinjoh M, Tomiyama N, Asakura A, Hoshino T.	Appl Environ Microbiol	10.1128/aem.61.2.413-420.1995	1995

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gluconobacter oxydans (NBRC 3294, LMG 1386, IFO 3294)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001580625

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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