Name: Gluconobacter oxydans JCM 20282
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162844

Type strain:

Species: Gluconobacter oxydans

Culture col. no.: JCM 20282, IAM 1821, IFO 3293, LMG 1385, NBRC 3293

Strain history: IAM 1821 <-- T. Asai G-11 ("Gluconobacter melanogenus") <-- IFO 3293 <-- K. Kondo 25.

NCBI tax ID(s): 1315969 (strain), 442 (species)

SI-ID 2900

LMG 1385, IAM 1821, IFO 3293, KCTC 2875, NBRC 3293, KCTC 12319, JCM 20282

Special Collections

Other strains from Gluconobacter oxydans

Section

Gluconobacter oxydans JCM 20282 is a Gram-negative bacterium that was isolated from Dried persimmon.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter oxydans**
	Full Scientific Name (LPSN)	Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

	Synonym	Gluconobacter oxydans subsp. suboxydans
	Synonym	"Acetomonas* suboxydans"*
	Synonym	"Gluconobacter* industrius"*
	Synonym	"Bacterium* oxydans"*
	Synonym	"Gluconobacter* suboxydans"*
	Synonym	Gluconobacter uchimurae
	Synonym	"Bacterium* industrium"*
	Synonym	Gluconobacter oxydans subsp. industrius
	Synonym	Gluconobacter oxydans subsp. melanogenes
	Synonym	"Acetobacter* suboxydans"*
	Synonym	"Acetobacter* melanogenus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.333

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.169
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Dried persimmon
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB178423 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 3293	AB178423	1409	GenBank ENA	442 tax ID
[Ref.: #124043]	Gluconobacter oxydans DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3293.	AB163859	676	GenBank ENA	442 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter oxydans NBRC 3293	1315969.3	wgs	PATRIC	1315969 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans NBRC 3293	2895238798	draft	JGI IMG/M	442 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans NBRC 3293	GCA_011766445	contig	GenBank ENA	1315969 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter oxydans NBRC 3293 PATRIC: 1315969.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter oxydans NBRC 3293 PATRIC: 1315969.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.496	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.169	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.634	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.765	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	63.272	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20282, IAM 1821, IFO 3293, LMG 1385, NBRC 3293

[Ref.: #113648]

SI-ID 2900

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of 3 phylogenetically distinct membrane-bound d-gluconate dehydrogenases of Gluconobacter spp. and their biotechnological application for efficient 2-keto-d-gluconate production.	Kataoka N, Saichana N, Matsutani M, Toyama H, Matsushita K, Yakushi T	Biosci Biotechnol Biochem	10.1093/bbb/zbac024	2022	*
Metabolism	The Auxiliary NADH Dehydrogenase Plays a Crucial Role in Redox Homeostasis of Nicotinamide Cofactors in the Absence of the Periplasmic Oxidation System in Gluconobacter oxydans NBRC3293.	Sriherfyna FH, Matsutani M, Hirano K, Koike H, Kataoka N, Yamashita T, Nakamaru-Ogiso E, Matsushita K, Yakushi T	Appl Environ Microbiol	10.1128/AEM.02155-20	2021	*
Metabolism	Efficient Production of 2,5-Diketo-d-Gluconate via Heterologous Expression of 2-Ketogluconate Dehydrogenase in Gluconobacter japonicus.	Kataoka N, Matsutani M, Yakushi T, Matsushita K	Appl Environ Microbiol	10.1128/AEM.04176-14	2015	*
Metabolism	Glycerol conversion to D-xylulose by a two-stage microbial reaction using Candida parapsilosis and Gluconobacter oxydans.	Habe H, Fukuoka T, Kitamoto D, Sakaki K	J Oleo Sci	10.5650/jos.58.595	2009	*
Metabolism	The pyrroloquinoline quinone synthesis genes of Gluconobacter oxydans.	Felder M, Gupta A, Verma V, Kumar A, Qazi GN, Cullum J	FEMS Microbiol Lett	10.1111/j.1574-6968.2000.tb09429.x	2000	*
Enzymology	Cloning and nucleotide sequencing of the membrane-bound L-sorbosone dehydrogenase gene of Acetobacter liquefaciens IFO 12258 and its expression in Gluconobacter oxydans.	Shinjoh M, Tomiyama N, Asakura A, Hoshino T	Appl Environ Microbiol	10.1128/aem.61.2.413-420.1995	1995	*
Metabolism	Characterisation of plasmids from diketogluconic acid producing strains of Gluconobacter oxydans.	Verma V, Felder M, Cullum J, Qazi GN	J Biotechnol	10.1016/0168-1656(94)90026-4	1994	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113648

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2900.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Gluconobacter oxydans NBRC 3293

Gluconobacter oxydans NBRC 3293

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