Name: Gluconobacter oxydans B 4099
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 47

Type strain:

Species: Gluconobacter oxydans

Strain Designation: B 4099

Culture col. no.: DSM 2003, CN 1221

Strain history: <- LBG, B 4099 (Acetobacter suboxydans) <- Wellcome Res. Lab., CN 1221

NCBI tax ID(s): 1435296 (strain), 442 (species)

SI-ID 2902

LMG 1394, DSM 2003, CECT 4009, VTT E-89363

Special Collections

DSMZ

Other strains from Gluconobacter oxydans

Section

Gluconobacter oxydans B 4099 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter oxydans**
	Full Scientific Name (LPSN)	Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

	Synonym	"Acetobacter* suboxydans"*
	Synonym	"Gluconobacter* industrius"*
	Synonym	"Acetobacter* melanogenus"*
	Synonym	"Bacterium* industrium"*
	Synonym	Gluconobacter oxydans subsp. suboxydans
	Synonym	"Acetomonas* suboxydans"*
	Synonym	"Bacterium* oxydans"*
	Synonym	"Gluconobacter* suboxydans"*
	Synonym	Gluconobacter uchimurae
	Synonym	Gluconobacter oxydans subsp. industrius
	Synonym	Gluconobacter oxydans subsp. melanogenes

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.833

Information on culture and growth conditions Culture and growth conditions

[Ref.: #951]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #951]

Culture medium growth

[Ref.: #951]

Culture medium link

Medium recipe at MediaDive

[Ref.: #951]

Culture medium composition

expand / minimize

[Ref.: #951]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #951]

Culture medium growth

[Ref.: #951]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #951]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.486
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #951]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter oxydans DSM 2003	GCA_000507285	contig	GenBank ENA	1435296 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans DSM 2003	1435296.3	wgs	PATRIC	1435296 tax ID	*
[Ref.: #66792]	Gluconobacter oxydans DSM 2003	2579779103	draft	JGI IMG/M	1435296 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter oxydans DSM 2003 PATRIC: 1435296.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter oxydans DSM 2003 PATRIC: 1435296.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.833	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.289	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.486	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.385	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.442	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	62.333	no

Availability in culture collections External links

[Ref.: #951]

Culture collection no.

DSM 2003, CN 1221

[Ref.: #69732]

SI-ID 2902

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Overexpression of mGDH in Gluconobacter oxydans to improve D-xylonic acid production from corn stover hydrolysate.	Mao X, Zhang B, Zhao C, Lin J, Wei D	Microb Cell Fact	10.1186/s12934-022-01763-y	2022	*
Enzymology	Identification of the enzymes responsible for 3-hydroxypropionic acid formation and their use in improving 3-hydroxypropionic acid production in Gluconobacter oxydans DSM 2003.	Zhu J, Xie J, Wei L, Lin J, Zhao L, Wei D	Bioresour Technol	10.1016/j.biortech.2018.06.001	2018	*
Enzymology	Enhancement of cell growth and glycolic acid production by overexpression of membrane-bound alcohol dehydrogenase in Gluconobacter oxydans DSM 2003.	Zhang H, Shi L, Mao X, Lin J, Wei D	J Biotechnol	10.1016/j.jbiotec.2016.09.003	2016	*
Metabolism	Fermentative production of high titer gluconic and xylonic acids from corn stover feedstock by Gluconobacter oxydans and techno-economic analysis.	Zhang H, Liu G, Zhang J, Bao J	Bioresour Technol	10.1016/j.biortech.2016.07.068	2016	*
Metabolism	Overexpression of membrane-bound gluconate-2-dehydrogenase to enhance the production of 2-keto-D-gluconic acid by Gluconobacter oxydans.	Li K, Mao X, Liu L, Lin J, Sun M, Wei D, Yang S	Microb Cell Fact	10.1186/s12934-016-0521-8	2016	*
Enzymology	Effective improvement of the activity of membrane-bound alcohol dehydrogenase by overexpression of adhS in Gluconobacter oxydans.	Zhang H, Shi L, Lin J, Sun M, Wei D	Biotechnol Lett	10.1007/s10529-016-2084-5	2016	*
Genetics	Draft Genome Sequence of the Gluconobacter oxydans Strain DSM 2003, an Important Biocatalyst for Industrial Use.	Sheng B, Ni J, Gao C, Ma C, Xu P	Genome Announc	10.1128/genomeA.00417-14	2014	*
Pathogenicity	Improving Gluconobacter oxydans performance in the in situ removal of the inhibitor for asymmetric resolution of racemic 1-phenyl-1,2-ethanediol.	Li DH, Lin JP, Wei DZ	Bioresour Technol	10.1016/j.biortech.2014.02.104	2014	*
Metabolism	Identification of a novel promoter gHp0169 for gene expression in Gluconobacter oxydans.	Shi L, Li K, Zhang H, Liu X, Lin J, Wei D	J Biotechnol	10.1016/j.jbiotec.2014.01.035	2014	*
Enzymology	Production of (3S)-acetoin from diacetyl by using stereoselective NADPH-dependent carbonyl reductase and glucose dehydrogenase.	Gao C, Zhang L, Xie Y, Hu C, Zhang Y, Li L, Wang Y, Ma C, Xu P	Bioresour Technol	10.1016/j.biortech.2013.02.115	2013	*
Metabolism	Efficient conversion of 1,2-butanediol to (R)-2-hydroxybutyric acid using whole cells of Gluconobacter oxydans.	Gao C, Zhang W, Huang Y, Ma C, Xu P	Bioresour Technol	10.1016/j.biortech.2011.11.009	2011	*
Enzymology	Molecular cloning of gluconobacter oxydans DSM 2003 xylitol dehydrogenase gene.	Sadeghi HM, Ahmadi R, Aghaabdollahian S, Mofid MR, Ghaemi Y, Abedi D	Res Pharm Sci		2011	*
Biotechnology	Characterization of a novel dextran produced by Gluconobacter oxydans DSM 2003.	Wang S, Mao X, Wang H, Lin J, Li F, Wei D	Appl Microbiol Biotechnol	10.1007/s00253-011-3267-6	2011	*
Enzymology	Construction of a novel shuttle vector for use in Gluconobacter oxydans.	Zhang L, Lin J, Ma Y, Wei D, Sun M	Mol Biotechnol	10.1007/s12033-010-9293-2	2010	*
Enzymology	Characterization of enzymes in the oxidation of 1,2-propanediol to D: -(-)-lactic acid by Gluconobacter oxydans DSM 2003.	Wei L, Yang X, Gao K, Lin J, Yang S, Hua Q, Wei D	Mol Biotechnol	10.1007/s12033-010-9263-8	2010	*
Metabolism	High cell density fermentation of Gluconobacter oxydans DSM 2003 for glycolic acid production.	Wei G, Yang X, Gan T, Zhou W, Lin J, Wei D	J Ind Microbiol Biotechnol	10.1007/s10295-009-0584-1	2009	*
Enzymology	Characterization of a novel NADPH-dependent oxidoreductase from Gluconobacter oxydans.	Chen M, Lin J, Ma Y, Wei D	Mol Biotechnol	10.1007/s12033-010-9283-4	2010	*
	Efficient bioconversion of 2,3-butanediol into acetoin using Gluconobacter oxydans DSM 2003.	Wang X, Lv M, Zhang L, Li K, Gao C, Ma C, Xu P	Biotechnol Biofuels	10.1186/1754-6834-6-155	2013	*

References

#951	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2003

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69732

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2902.1 )

* These data were automatically processed and therefore are not curated

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Gluconobacter oxydans DSM 2003

Gluconobacter oxydans DSM 2003

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