Name: Sphingomonas sp. JCM 18016
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162169

Type strain:

Species: Sphingomonas sp.

Culture col. no.: JCM 18016, KCTC 23762

Strain history: D.-C. Yang and Y.-J. Kim DCY58.

NCBI tax ID(s): 28214 (species)

Other strains from Sphingomonas sp.

S. sp. JCM 19859, KCTC 42061 (type strain)
S. sp. DSM 3298, ATCC 21764, IFO 13215, ...
S. sp. HH69, DSM 7135, CCUG 31190
S. sp. DAK3, DSM 7356
S. sp. BF2, DSM 9260
S. sp. P5, DSM 11620
S. sp. RW5, DSM 12401
S. sp. 10-1, DSM 12247
S. sp. M1L7, DSM 16543
S. sp. B1ZH1, DSM 16544
S. sp. SC-N048, DSM 21915
S. sp. SC-N060, DSM 21917
S. sp. ES1-132-2, DSM 30514
S. sp. BF14, DSM 9257, ACM 4962
S. sp. ST033204(HKI),
S. sp. ST033392(HKI),
S. sp. ST022289(HKI), F116, BI 11505, ...
S. sp. SF004733(FSU),
S. sp. SF004735(FSU),
S. sp. SF004741(FSU),
S. sp. SF004742(FSU),
S. sp. SF004743(FSU),
S. sp. 5.2, DSM 24959
S. sp. EL-56, DSM 11474
S. sp. LnR5-44, DSM 21012
S. sp. DSM 22213, CCTCC AA 209011, JSM ...
S. sp. Root710, DSM 102538
S. sp. Root720, DSM 102539
S. sp. Root1294, DSM 102535
S. sp. Root241, DSM 102536
S. sp. Root50, DSM 102537
S. sp. Leaf28, DSM 102724
S. sp. Leaf17, DSM 102725
S. sp. Leaf343, DSM 102726
S. sp. Leaf30, DSM 102727
S. sp. Leaf21, DSM 102728
S. sp. Leaf4, DSM 102729
S. sp. Leaf16, DSM 102730
S. sp. Leaf32, DSM 102731
S. sp. Leaf357, DSM 102732
S. sp. Leaf33, DSM 102733
S. sp. Leaf34, DSM 102734
S. sp. Leaf10, DSM 102735
S. sp. Leaf20, DSM 102736
S. sp. Leaf9, DSM 102737
S. sp. Leaf37, DSM 102738
S. sp. Leaf11, DSM 102739
S. sp. Leaf339, DSM 102740
S. sp. Leaf38, DSM 102741
S. sp. Leaf62, DSM 102742
S. sp. Leaf231, DSM 102743
S. sp. Leaf242, DSM 102744
S. sp. Leaf67, DSM 102745
S. sp. Leaf25, DSM 102746
S. sp. Leaf198, DSM 102747
S. sp. Leaf23, DSM 102748
S. sp. Leaf5, DSM 102749
S. sp. Leaf24, DSM 102750
S. sp. Leaf205, DSM 102751
S. sp. Leaf407, DSM 102752
S. sp. Leaf42, DSM 102753
S. sp. Leaf208, DSM 102754
S. sp. Leaf230, DSM 102755
S. sp. Leaf22, DSM 102756
S. sp. Leaf412, DSM 102757
S. sp. Leaf29, DSM 102758
S. sp. Leaf226, DSM 102759
S. sp. Leaf257, DSM 102760
S. sp. D2_1, DSM 103740
S. sp. D18-1, DSM 103749
S. sp. CIP 107349
S. sp. CCUG 18318, LMG 9555
S. sp. CCUG 23675
S. sp. CCUG 24024
S. sp. CCUG 24103
S. sp. CCUG 27330
S. sp. CCUG 30190
S. sp. CCUG 30619
S. sp. CCUG 30978
S. sp. CCUG 31191
S. sp. CCUG 31199, RM 4
S. sp. CCUG 31200
S. sp. CCUG 31206
S. sp. CCUG 31438
S. sp. CCUG 31493
S. sp. CCUG 31521
S. sp. CCUG 31772
S. sp. CCUG 31773
S. sp. CCUG 32008
S. sp. CCUG 32543
S. sp. CCUG 33269
S. sp. CCUG 33747
S. sp. CCUG 34124
S. sp. CCUG 35843
S. sp. CCUG 36830
S. sp. CCUG 36955, DSMZ ID 97-002
S. sp. CCUG 36958
S. sp. CCUG 36960
S. sp. CCUG 38135
S. sp. CCUG 38233
S. sp. CCUG 38824
S. sp. CCUG 39394
S. sp. CCUG 41850
S. sp. CCUG 41856 C
S. sp. CCUG 41903 C
S. sp. CCUG 42010 B
S. sp. CCUG 42678 C
S. sp. CCUG 43355
S. sp. CCUG 43396
S. sp. CCUG 43484
S. sp. CCUG 44446
S. sp. CCUG 44447
S. sp. CCUG 53622
S. sp. CCUG 56523 A
S. sp. CCUG 58318
S. sp. CCUG 59592
S. sp. CCUG 59723
S. sp. CCUG 60483
S. sp. CCUG 61596
S. sp. JCM 10459
S. sp. JCM 14771, KCTC 12897
S. sp. JCM 14772, KCTC 12898
S. sp. JCM 15505
S. sp. JCM 17075
S. sp. JCM 17462
S. sp. JCM 17541, KCTC 23327
S. sp. JCM 21328, IAM 14822
S. sp. JCM 21330, IAM 14824
S. sp. JCM 21331, IAM 14825
S. sp. JCM 21332, IAM 14826
S. sp. T19, DSM 103178

Section

Sphingomonas sp. JCM 18016 is a mesophilic bacterium that was isolated from Ginseng field in Pocheon Province.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Full Scientific Name (LPSN)	Sphingomonas Yabuuchi et al. 1990

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Ginseng field in Pocheon Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JN852951 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	19
Soil Samples	251
Animal Samples	35
Plant Samples	131
Total Samples	436

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	'Sphingomonas ginsengisoli' Hoang et al. 2012 strain DCY58 16S ribosomal RNA gene, partial sequence	JN852951	1381	ENA	1706000 tax ID

[Ref.: #67770]

GC-content

65.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18016, KCTC 23762

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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