Strain identifier
BacDive ID: 162169
Type strain: 
Species: Sphingomonas sp.
Strain history: D.-C. Yang and Y.-J. Kim DCY58.
NCBI tax ID(s): 28214 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162169
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas sp. JCM 18016 is a mesophilic bacterium that was isolated from Ginseng field in Pocheon Province.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
strain history
- @ref: 67770
- history: D.-C. Yang and Y.-J. Kim DCY58.
doi: 10.13145/bacdive162169.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Ginseng field in Pocheon Province
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_41276.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_8432;97_10152;98_12464;99_41276&stattab=map
- Last taxonomy: Sphingomonas
- 16S sequence: JN852951
- Sequence Identity:
- Total samples: 436
- soil counts: 251
- aquatic counts: 19
- animal counts: 35
- plant counts: 131
Sequence information
16S sequences
- @ref: 67770
- description: 'Sphingomonas ginsengisoli' Hoang et al. 2012 strain DCY58 16S ribosomal RNA gene, partial sequence
- accession: JN852951
- length: 1381
- database: ena
- NCBI tax ID: 1706000
GC content
- @ref: 67770
- GC-content: 65.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 18016, KCTC 23762
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |