Sphingomonas sp. (DSM 102736, Leaf20)

Name: Sphingomonas sp. (DSM 102736, Leaf20)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131953

Type strain

Strain Designation Leaf20

Culture col. no. DSM 102736 Leaf20

NCBI tax ID(s) 28214

Special Collections DSMZ Arabidopsis

History DSMZ <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf20 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

Links

Leaf20 is a bacterium that was isolated from leaf of wild-type Arabidopsis thaliana.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 396964

DSM 102736

@ref 20215

Last LPSN update 2026-05-29 08:37:44

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Full scientific name Sphingomonas Yabuuchi et al. 1990

Synonyms (18)

Alterirhizorhabdus
Paraquisediminimonas
Novistakelama
Parastakelama
Alteristakelama
Pseudostakelama
Alterisphingomonas
Solisphingomonas
Parayabuuchia
Humisphingomonas
Pseudosphingomonas
Neorhizorhabdus
Parasphingomonas
Flavisphingomonas
Edaphosphingomonas
Pararhizorhabdus
Alteriyabuuchia
Alterisphingopyxis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	91.711
125438	negative	93.302

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23745	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23745	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.742

Spore formation

@ref	Spore formation	Confidence
125438		92.669
125439		97.128

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23745	leaf of wild-type Arabidopsis thaliana	Arabidopsis thaliana	Brugg (47.4816806N 8.217547222E)	Switzerland	CHE	Europe	47.4817	8.2176 47.4817/8.2176

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf20 assembly for Sphingomonas sp. Leaf20	contig	GCA_001421535	1735685.3	2643221751	1735685	75.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leaf20 assembly for Sphingomonas sp. Leaf20
BV-BRC: 1735685.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	91.71	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.74	no
125439	motility	BacteriaNetⓘ	yes	61.28	no
125439	spore_formation	BacteriaNetⓘ	no	97.13	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingomonas sp. Leaf20
PATRIC: 1735685.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.30	no
125438	anaerobic	anaerobicⓘ	no	96.22	no
125438	spore-forming	spore-formingⓘ	no	92.67	no
125438	aerobic	aerobicⓘ	yes	89.80	no
125438	thermophilic	thermophileⓘ	no	98.12	yes
125438	flagellated	motile2+ⓘ	yes	66.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Metagenomic insight into the microbial degradation of organic compounds in fermented plant leaves.	Tao J, Chen Q, Chen S, Lu P, Chen Y, Jin J, Li J, Xu Y, He W, Long T, Deng X, Yin H, Li Z, Fan J, Cao P	Environ Res	10.1016/j.envres.2022.113902	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23745	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102736
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingomonas sp. (DSM 102736, Leaf20)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001421535

Genome-based predictions

Predictions

Literature

Literature

References

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